Fate of low molecular weight organic substances in an arable soil: From microbial uptake to utilisation and stabilisation

Microbial uptake and utilisation are the main transformation pathways of low molecular weight organic substances (LMWOS) in soil, but details on transformations are strongly limited. As various LMWOS classes enter biochemical cycles at different steps, we hypothesize that the percentage of their carbon (C) incorporation into microbial biomass and consequently stabilisation in soil are different.Representatives of the three main groups of LMWOS: amino acids (alanine, glutamate), sugars (glucose, ribose) and carboxylic acids (acetate, palmitate) – were applied at naturally-occurring concentrations into a loamy arable Luvisol in a field experiment. Incorporation of ¹³C from these LMWOS into extractable microbial biomass (EMB) and into phospholipid fatty acids (PLFAs) was investigated 3 d and 10 d after application. The microbial utilisation of LMWOS for cell membrane construction was estimated by replacement of PLFA-C with ¹³C.35–80% of initially applied LMWOS-¹³C was still present in the composition of soil organic matter after 10 days of experiment, with 10–24% of ¹³C incorporation into EMB at day three and 1–15% at day 10. Maximal incorporation of ¹³C into EMB was observed from sugars and the least from amino acids. Strong differences in microbial utilisation between LMWOS were observed mainly at day 10. Thus, despite similar initial rapid uptake by microorganisms, further metabolism within microbial cells accounts for the specific fate of C from various LMWOS in soils.¹³C from each LMWOS was incorporated into each PLFA. This reflects the ubiquitous utilisation of all LMWOS by all functional microbial groups. The preferential incorporation of palmitate into PLFAs reflects its role as a direct precursor for fatty acids. Higher ¹³C incorporation from alanine and glucose into specific PLFAs compared to glutamate, ribose and acetate reflects the preferential use of glycolysis-derived substances in the fatty acids synthesis.Gram-negative bacteria (16:1ω7c and 18:1ω7c) were the most abundant and active in LMWOS utilisation. Their high activity corresponds to a high demand for anabolic products, e.g. to dominance of pentose-phosphate pathway, i.e. incorporation of ribose-C into PLFAs. The ¹³C incorporation from sugars and amino acids into filamentous microorganisms was lower than into all prokaryotic groups. However, for carboxylic acids, the incorporation was in the same range (0.1–0.2% of the applied carboxylic acid ¹³C) as that of gram-positive bacteria. This may reflect the dominance of fungi and other filamentous microorganisms for utilisation of acidic and complex organics.Thus, we showed that despite similar initial uptake, C from individual LMWOS follows deviating metabolic pathways which accounts for the individual fate of LMWOS-C over 10 days. Consequently, stabilisation of C in soil is mainly connected with its incorporation into microbial compounds of various stability and not with its initial microbial uptake.     

Sorption, microbial uptake and decomposition of acetate in soil: Transformations revealed by position-specific C labeling

Many previous studies on transformation of low molecular weight organic substances (LMWOS) in soil were based on applying ¹⁴C and/or ¹³C labeled substances. Nearly all these studies used uniformly labeled substances, i.e. all C atoms in the molecule were labeled. The underlying premise is that LMWOS transformation involves the whole molecule and it is not possible to distinguish between 1) the flux of the molecule as a whole between pools (i.e. microbial biomass, CO₂, DOM, SOM, etc.) and 2) the splitting of the substance into metabolites and tracing those metabolites within the pools.Based on position-specific¹⁴C labeling, we introduce a new approach for investigating LMWOS transformation in soil: using Na-acetate labeled with ¹⁴C either in the 1st position (carboxyl group, -COOH) or in the 2nd position (methyl group, -CH₃), we evaluated sorption by the soil matrix, decomposition to CO₂, and microbial uptake as related to both C atoms in the acetate. We showed that sorption of acetate occurred as a whole molecule. After microbial uptake, however, the acetate is split, and C from the -COOH group is converted to CO₂ more completely and faster than C from the -CH₃ group. Correspondingly, C from the -CH₃ group of acetate is mainly incorporated into microbial cells, compared to C from the -COOH group. Thus, the rates of C utilization by microorganisms of C from both positions in the acetate were independently calculated. At concentrations of 10 μmol l⁻¹, microbial uptake from soil solution was very fast (half-life time about 3 min) for both C atoms. At concentrations <100 μmol l⁻¹ the oxidation to CO₂ was similar for C atoms of both groups (about 55% of added substance). However, at acetate concentrations >100 μmol l⁻¹, the decomposition to CO₂ for C from -CH₃ decreased more strongly than for C from -COOH.We conclude that the application of position-specifically labeled substances opens new ways to investigate not only the general fluxes, but also transformations of individual C atoms from molecules. This, in turn, allows conclusions to be drawn about the steps of individual transformation processes on the submolecular level and the rates of these processes.     

Response of white mustard (Sinapis alba) and the soil microbial biomass to P and Zn addition in a greenhouse pot experiment

A 45‐d pot experiment was carried out to investigate the response of white mustard and the soil microbial biomass after Zn and P addition to a P deficient silt loam. The underlying hypothesis was that P application reduces the Zn availability to crops and microbial biomass. White mustard was supplied with different levels of P (0, 50, and 100 µg g^?1 soil) and Zn (0, 10, and 20 µg g^?1 soil). Amendments of P generally reduced extractable Zn, shoot Zn and soil microbial biomass Zn. Amendments of P generally decreased the microbial biomass C/P ratio. At 20 µg Zn g^?1 soil, a negative effect on the microbial biomass C/P ratio was observed, suggesting that high contents of extractable Zn have a negative impact on the microbial P uptake. However, the minimum Zn requirements of soil microorganisms and the consequences of microbial Zn deficiency for soil microbiological processes are completely unknown.     

Impact of effective microorganisms and other biofertilizers on soil microbial characteristics,organic‐matter decomposition,and plant growth

Incubation and pot experiments were conducted to investigate the impact of commercially distributed biofertilizers (effective microorganisms [EM], BIOSTIMULATOR, BACTOFIL‐A, and BACTOFIL‐B) on soil microbial‐biomass content and activity, net N mineralization in soil, and growth of Lolium perenne. According to the manufacturers, the products tested are based on microbial inoculants or organic growth stimulants, and are supposed to influence soil microbial properties and improve soil conditions, organic‐matter decomposition, and plant growth. In the incubation experiment (40 d, 20.6°C, 50% maximum water‐holding capacity), EM was repeatedly applied to soil together with different organic amendments (nonamended, chopped straw, and lupine seed meal). Under the experimental conditions of this study, no or only marginal effects of EM on organic C, total N, and mineral N in soil could be observed. In soil treatments without any organic amendment, EM suspension slightly enhanced microbial activity measured as soil CO₂ evolution. In soil with easily degradable plant residues (lupine seed meal), EM suspension had a suppressive effect on microbial biomass. However, comparisons with sterilized EM and molasses as the main additive in EM suspension showed that any effect of EM could be explained as a pure substrate effect without the influence of added living organisms. In the pot experiment with Lolium perenne (air‐conditioned greenhouse cabin, 87 d, 16.8°C, 130 klxh d^–1 light quantity), the products EM, BIOSTIMULATOR, BACTOFIL‐A, and BACTOFIL‐B were tested in soil with growing plants. The products were repeatedly applied for a period of 42 d. Within this study, no effects of the different biofertilizers on mineral N in soil were detectable. There were clear suppressive effects of all tested biofertilizers on microbial‐biomass content and activity. Comparisons with sterilized suspensions showed that the effects were not due to living microorganisms in the suspensions, but could be traced back to substrate‐induced processes.     

Improved RP‐HPLC and anion‐exchange chromatography methods for the determination of amino acids and carbohydrates in soil solutions

In spite of their low concentrations in soil solutions, low–molecular weight organic substances (LMWOS) such as amino acids, sugars, and uronic acids play a major role in the cycles of C and N in soil. With respect to their low concentrations and to possible matrix interferences, their analysis in soil leachates is a challenging task. We established two HPLC (high‐performance liquid chromatography) methods for the parallel determination of amino acids and carbohydrates in soil leachates. The pre‐column derivatization of amino acids with an o‐phthaldialdehyde (OPA) mercaptoethanol solution yields quantitation limits between 0.03 and 0.44 µmol L^–1 and S_D values of <8.3% (n = 9). High‐performance anion‐exchange chromatography (HPAEC) on a Dionex CarboPac PA 20 column with a NaOH acetate gradient combined with pulsed amperometric detection (PAD) was used for the determination of carbohydrates. The calibration curves obtained for 11 carbohydrates showed excellent linearity over the concentration range from 0.02 to 50.0 mg L^–1. Recovery studies revealed good results for all analytes (89%–108%). Interferences from Hg(II) salts and chloroform used for stabilization of the leachates did not occur with both chromatographic methods. The optimized method was successfully used for quantitative determinations of amino acids and carbohydrates in soil leachates.     

Evidence for proteolysis of a recombinant prion protein in a lamb brain‐amended loamy soil

Soils contaminated by prions, the infectious agents responsible for transmissible spongiform encephalopathy diseases, remain infectious to grazing animals for many years. In this study, the ability of enzymes produced by soil microbes to degrade a recombinant prion protein (recPrP) was investigated in a loamy soil. A ¹⁵N‐labelled recPrP was added to soil in which microbial biomass and soil proteolytic activity had been increased by either simultaneous or prior amendment with lamb brain, and distribution of ¹⁵N among soil solid particles, soluble molecules and bacterial biomass was determined. After 1 day the proportions of recovered recPrP‐N associated with microbial biomass and soluble molecules were 6–9 and 15–19%, respectively, which is consistent with the hypothesis of degradation. A greater incorporation of ¹⁵N‐derived β‐sheeted recPrP into the microbial biomass pool occurred when the soil proteolytic activity was pre‐stimulated by a lamb brain amendment, suggesting that the recPrP degradation in soil is mediated by the activity level of proteolytic enzymes produced by the microbial biomass. The majority (35–87%) of the recovered recPrP‐N was associated with the soil particles. An observed partial degradation of recPrP deposited on a mica surface by soil soluble enzymes indicated a sorption‐related resistance to proteolysis. In conclusion, integration of the stimulation and turnover of the soil microbial component, after an input of a large amount of animal organic matter with the sorption properties of prion protein, is required to model and predict prion survivability, transformation and transmissibility in soil.     

Effects of glucose,cellulose, and humic acids on soil microbial eco‐physiology

Microbial eco‐physiology in soils is regulated by substrate quality of the organic matter. This regulation was studied for a forest and an agricultural soil by the combination of activity and biomass techniques. Soil respiration was stimulated by the substrate quality in the order, humic acid < cellulose < glucose over 20 days. Concurrently, substrate addition increased the respiratory quotient (RQ), defined as the ratio of mol CO₂ evolution per mol O₂ uptake. Anabolic processes were mainly induced by glucose addition. Soil preconditioned with glucose showed a decrease in the RQ value during glucose‐induced microbial growth in comparison to non‐amended control. The decrease in the RQ value induced by preconditioning with cellulose and humic acid was lower. Glucose, cellulose, and humic acid addition modified the microbial biomass as estimated by fumigation‐extraction (FE), substrate‐induced respiration (SIR), and ATP content. Since each biomass estimate refers to specific microbial components, shifts in microbial eco‐physiology and community structure induced by substrate quality were reflected by SIR : FE and SIR : ATP ratios. The active and glucose‐responsive biomass in the forest soil which was earlier suggested as being dominated by K‐strategists was increased in the order, humic acid < cellulose < glucose.     

Impact of plant species and atmospheric CO2 concentration on rhizodeposition and soil microbial activity and community composition

Both plant species and CO₂ concentration can potentially affect rhizodeposition and consequently soil microbial activity and community composition. However, the effect differs based on plant developmental stage. We focused on the effect of three plant species (forbs, grasses, and N₂‐fixers) at an early stage of development on root C deposition and fate, soil organic matter (SOM) mineralization and soil microbial community composition at ambient (aCO₂) and elevated (eCO₂) CO₂ levels. Plants were grown from seed, under continuous ¹³C‐labelling atmospheres (400 and 800 µmol mol^?1 CO₂), in grassland soil for three weeks. At the end of the growth period, soil respiration, dissolved organic C (DOC) and phospholipid fatty acid (PLFA) profiles were quantified and isotopically partitioned into root‐ and soil‐derived components. Root‐derived DOC (0.53 ± 0.34 and 0.26 ± 0.29 µg mL soil solution^?1) and soil‐derived CO₂ (6.14 ± 0.55 and 5.04 ± 0.44 µg CO₂‐C h^?1) were on average two times and 22% higher at eCO₂ than at aCO₂, respectively. Plant species differed in exudate production at aCO₂ (0.11 ± 0.11, 0.10 ± 0.18, and 0.58 ± 0.58 µg mL soil solution^?1 for Plantago, Festuca, and Lotus, respectively) but not at eCO₂ (0.20 ± 0.28, 0.66 ± 0.32, and 0.75 ± 0.15 µg mL soil solution^?1 for Plantago, Festuca, and Lotus, respectively). However, no differences among plant species or CO₂ levels were apparent when DOC was expressed per gram of roots. Relative abundance of PLFAs did not differ between the two CO₂ levels. A higher abundance of actinobacteria and G‐positive bacteria occurred in unplanted (8.07 ± 0.48 and 24.36 ± 1.18 mol%) and Festuca‐affected (7.63 ± 0.31 and 23.62 ± 0.69 mol%) soil than in Plantago‐ (7.04 ± 0.36 and 23.41 ± 1.13 mol%) and Lotus‐affected (7.24 ± 0.17 and 23.13 ± 0.52 mol%) soil. In conclusion, the differences in root exudate production and soil respiration are mainly caused by differences in root biomass at an early stage of development. However, plant species evidently produce root exudates of varying quality affecting associated microbial community composition.     

The phenanthrene‐sorptive interface of an arable topsoil and its particle size fractions

Sorption of organic chemicals in soil is affected by the properties and availability of surfaces. These surfaces are composed of diverse mineral, organic and biological components, forming a soil's ‘biogeochemical interface’. Phenanthrene was used to probe the hydrophobic sorptive capacity of the interface of an arable soil. Batch sorption experiments were carried out with the bulk soil as well as the fine (0.2–6.3 µm) and coarse (6.3–63 µm) particle size fractions of two arable topsoil samples with different organic matter (OM) contents from a Eutric Cambisol. The specific surface area (SSA) of the bulk soil and particle size fractions was determined by BET‐N₂ and EGME sorption. OM composition was characterized by solid‐state ¹³C NMR spectroscopy. No clear relationship was found between phenanthrene sorption and SSA. We conclude that phenanthrene probes a specific fraction of the soil interface that is not well represented by the traditional methods of SSA detection such as BET‐N₂ and EGME sorption. The sorption behaviour of phenanthrene may therefore provide a useful additional tool to characterize the specific affinity of the soil biogeochemical interface for hydrophobic molecules. Sorption capacity for phenanthrene increased after particle‐size fractionation, indicating that the reduced availability of the interface caused by the aggregated structure is important for the sorptive capacity of a soil. This should be considered when projecting data obtained from extensively treated and fractionated samples to the actual interaction with biogeochemical interfaces as they are present in soil.     

Coffee mucilage impact on young coffee seedlings and soil microorganisms

A greenhouse pot experiment was carried out to assess the effects of fermented coffee mucilage applied as mulch together with maize leaves on the growth of young coffee plants of two different varieties and on soil microbial biomass indices. The coffee variety Catuai required 32% more water per g plant biomass than the variety Yellow Caturra, but had a 49% lower leaf area, 34% less shoot and 46% less root biomass. Maize and mucilage amendments did not affect leaf area, shoot and root yield, or the N concentration in shoot and root dry matter. The amendments always reduced the water use efficiency values, but this reduction was only significant in the maize+mucilage‐14 (= 14 g mucilage pot^?1) treatment. Soil pH significantly increased from 4.30 in the control to 4.63 in the maize+mucilage‐14 treatment. Microbial biomass C increased by 18.5 µg g^?1 soil, microbial biomass N by 3.1 µg g^?1 soil, and ergosterol by 0.21 µg g^?1 soil per g mucilage added pot^?1. The presence of mucilage significantly reduced the microbial biomass‐C/N ratio from a mean of 13.4 in the control and maize treatments to 9.3, without addition rate and coffee variety effects. The application of non‐composted mucilage is recommended in areas where drought leads to economic losses and in coffee plantations on low fertility soils like Oxisols, where Al toxicity is a major constraint.     

Short‐term effects of application of different rates of inorganic P and residue P on soil P pools and wheat growth

Phosphorus (P) can be added to soil as inorganic P or crop‐residue P, but little is known about how these two forms of P addition affect soil P pools and how their effect changes with the rate of P addition. A glasshouse experiment was conducted to assess the effect of inorganic P and P added as residues at different rates on (1) soil P pools at two time points: immediately after amendment and 42 d later, and (2) growth and P uptake by wheat at flowering (day 42). Three types of legume residues (faba bean young shoot, chickpea mature shoots with pods, and white lupin mature shoots without pods) were added to a loamy‐sand soil at a rate of 5 or 15 g residue kg^–1. Inorganic P was added at four different rates (3, 10, 30, and 100 mg P kg^–1) to give P‐addition rates corresponding to the total P added with the different residues at the two residue rates. Soil P pool concentrations (microbial P, resin‐P, NaHCO₃‐P, NaOH‐P, HCl‐P, and residual P) and wheat growth and P uptake (shoot and root) were measured after 6 weeks. Compared to inorganic P addition, P added with residues led to a 10%–80% greater increase in shoot biomass at the two highest P‐addition rates. Wheat P uptake was positively correlated with resin‐P and microbial‐P concentrations in residue‐P‐amended soil, but with resin‐P and NaOH‐P_i concentrations in soil amended with inorganic P. The concentration of HCl‐P decreased by up to 30% from day 0 to day 42 in the residue treatments and that of residual P decreased by about 20% in all treatments during this period suggesting that these nonlabile P pools are quite dynamic and could serve as P source for plants.     

Long‐term changes of aggregate‐associated and labile soil organic carbon and nitrogen after conversion from forest to grassland and cropland in northern Turkey

Soil management systems can have great effect on soil chemical, physical and biological properties. Conversion of forest to grassland and cropland can alter C and N dynamics. The objective of this study was to evaluate the changes in aggregate‐associated and labile soil organic C and N fractions after conversion of a natural forest to grassland and cropland in northern Turkey. This experiment was conducted on plots subject to three different adjacent land uses (forest, grassland and cropland). Soil samples were taken from 0–5, 5–15 and 15–30 cm depths from each land use. Some soil physical (soil texture, bulk density), chemical (soil pH, soil organic matter, lime content, total organic C and N, inorganic N, free and protected organic C) and biological (microbial biomass C and N, mineralizable C and N) properties were measured. The highest and lowest bulk densities were observed in grassland (1.41 g cm⁻³) and cropland (1.14 g cm⁻³), respectively. Microbial biomass C and total organic C in forest were almost twice greater than grassland and four‐times greater than cropland. Cultivation of forest reduced total organic N, mineralizable N and microbial biomass N by half. The great portion of organic C was stored in macroaggregates (>250 µm) in all the three land uses. Free organic C comprised smaller portion of soil organic C in all the three land uses. Thus, this study indicated that long‐term conversion of forest to grassland and cropland significantly decreased microbial biomass C, mineralizable C and physically protected organic C and the decreases were the greatest in cropland. Copyright © 2011 John Wiley & Sons, Ltd.     

Decoupling of microbial glucose uptake and mineralization in soil

The rate of organic matter turnover in soil is a critical component of the terrestrial carbon cycle and is frequently estimated from measurements of respiration. For estimates to be reliable requires that isotopically labelled substrate uptake into the soil microbial biomass and its subsequent mineralization occurs almost simultaneously (i.e. no time delay). Here we investigated this paradigm using glucose added to an agricultural soil. Immediately after collection from the field, various concentrations of ¹⁴C-labeled glucose (1 μM to 10 mM) were added to soil and the depletion from the soil solution measured at 1–60 min after substrate addition. ¹⁴CO₂ production from the mineralization of glucose was simultaneously measured. The microbial uptake of glucose from soil solution was concentration-dependent and kinetic analysis suggests the operation of at least two distinct glucose transport systems of differing affinity. At glucose concentrations reflecting those naturally present in the soil solution (54±10 μM), the half-time (t_1/2) of exogenous glucose was extremely rapid at ca. 30 s. At higher glucose concentrations (100 μM to 10 mM), the t_1/2 values for the high-affinity carrier were altered little, but increasing proportions of glucose were taken up by the low affinity transport system. Glucose mineralization by the soil microbial community showed a significant delay after its uptake into the microbial biomass suggesting a decoupling of glucose uptake and subsequent respiration, possibly by dilution of glucose in labile metabolite pools. By fitting a double first order kinetic equation to the mineralization results we estimated the t_1/2 for the first rapid phase of respiration at natural soil solution glucose concentrations to be 6–8 min, but at least 87% of the added glucose was retained in the microbial biomass prior to mineralization. Our results suggest that in this soil the soil solution glucose pool turns over 100–1000 times each day, an order of magnitude faster than when determined from measurements of mineralization. These results imply that traditional isotopic based measurements of substrate turnover measured using CO₂ may vastly underestimate their rate of cycling in soil.     

Carbohydrate and amino acid composition of dissolved organic matter leached from soil

Low molecular weight organic substances (LMWOS) in soil and soil solution include mainly amino acids, carboxylic acids, and carbohydrates. Due to their high bioavailability they play a crucial role in the cycles of C and nutrients in soils. The variety of soil processes that involve LMWOS requires identifying their composition to elucidate reactions and transformations. In most studies, LMWOS are extracted under artificial conditions, e.g. batch experiments, which may overestimate the actual concentrations. This study measures the composition of carbohydrates and amino acids in solution of a Haplic Luvisol leached in a column experiment. A combined system for simultaneous leaching and blowout of CO₂ was used to estimate LMWOS decomposition. ¹⁴C-labeled glucose was added as a highly sensitive tracer to control the efficiency of the LMWOS extraction by leaching and to estimate LMWOS decomposition during leaching. High performance liquid chromatography (HPLC), optimized for soil extracts, was used to analyze LMWOS composition. For HPLC optimization, different preparations of leached solutions (filtration vs. centrifugation, and drying vs. no-drying) were compared. For sugar determination, drying had no influence on the solution concentrations. In contrast, amino acid concentrations significantly decreased by drying LMWOS eluted substances. Combining the HPLC identification of eluted substances with ¹⁴C tracer application revealed that about 5% of the glucose could be leached unchanged within 786 min (13.1 h), whereas about 84% remained in the soil, 9% were decomposed to CO₂, and 2% were transformed to other LMWOS and recovered in the soil solution. The total amino acid concentration (TAC) in soil solution was about 8.2 μmol l⁻¹, dominated by alanine (14.4% of TAC), glycine (13.4%), glutamic acid (9.9%), serine (9.4%), and leucine (9.3%). The total carbohydrate concentration was about 2.4 μM, dominated by glucose (29.9%), glucuronic acid (26.8%), and galacturonic acid (17.3%). Ratios of hexoses to pentoses, amino sugars glucosamine to galactosamine, and neutral sugars to uronic acids were determined. All three parameters pointed to the dominant influence of plants as the source of LMWOS in the leached soil solution. Within the small contribution of microorganisms, bacteria dominated over fungi. These used biomarker ratios as well as LMWOS concentrations differed widely from the ones obtained with conventional batch extraction. More research is necessary to evaluate the application of these biomarkers to soil solutions.     

LONG‐TERM LAND USE INFLUENCES SOIL MICROBIAL BIOMASS P AND S,PHOSPHATASE AND ARYLSULFATASE ACTIVITIES,AND S MINERALIZATION IN A BRAZILIAN OXISOL

Land use choices differentially affect soil physical and biological properties. Tillage choices in particular affect soil erosion, the retention of soil organic matter, and the biological activity that organic matter supports. The present study evaluated the consequences of different cropping and tillage systems (undisturbed forest, coffee plantation, conventional, and no‐tillage row cropping) for soil microbial indicators and sulfur mineralization after 24 years of cropping on an Oxisol (Typic Haplorthox) in an experimental area at Londrina, Brazil. Soil samples were taken at 0–5, 5–10, and 10–20 cm depths and evaluated for microbial biomass P and S, S mineralization, and phosphatase and arylsulfatase activities. Land use affected microbial biomass P and S, and enzyme activity at all depths studied. The cultivated sites had lower values of microbial activity than the undisturbed forested site. Although the coffee site was not tilled and had high organic carbon content, there was low microbial activity, probably due to higher soil acidity and Al content. The estimates of pool stock for microbial P and annual P flux through the soil microbial biomass suggest that these pools are large enough to significantly affect plant nutrient availability. The greater microbial biomass and activity under forested and no‐tillage sites may be attributed, at least partially, to higher organic matter content. The soil microbial variables examined proved to be strong indicators of soil sustainability. Copyright © 2013 John Wiley & Sons, Ltd.     

The role of “effective microorganisms” in the composting of banana (Musa ssp.) residues

“Effective microorganisms” (EM) are a poorly defined mixture of supposedly beneficial microorganisms that are claimed to enhance microbial turnover in compost and soil. In Costa Rica, EM are used to produce organic compost (bokashi) from banana residues (Musa ssp.). Given the scarcity of scientific data about the effects of EM on the mineralization of plant residues, this study aimed at investigating the effects of EM addition on the decomposition of banana residues during Bokashi production. To this end, the following non‐EM treatments were compared to EM Bokashi: Bokashi produced with water (W), with molasses (M) as an EM additive, and with sterilized EM (EMst). Subsequently, the effects of the resulting Bokashi treatments on the growth of young banana plants were evaluated. Compared with non‐EM controls, the effect of EM on the mineralization of banana material was negligible. Dry‐matter losses of the composts with different EM treatments were similar, with about 78% over 5 weeks. Ergosterol concentration was highest in EM Bokashi (77 µg (g dry soil)^–1) and lowest in EMst Bokashi (29 µg (g dry soil)^–1). Microbial biomass carbon (C_mic) and microbial biomass nitrogen (N_mic) were both lowest in EM (C_mic = 3121 µg g^–1; N_mic = 449 µg g^–1), while C_mic was highest in Bokashi produced with molasses (3892 µg g^–1) and N_mic was highest in EMst (615 µg g^–1). Treatment effects on adenylate concentrations and adenylate energy charge were negligible. Application of all Bokashi variants to young banana plants significantly increased shoot growth under greenhouse conditions compared to plants grown in a control soil without amendments. However, these effects were similar for all Bokashi treatments, even if EM Bokashi increased the K concentrations in banana leaves significantly compared to Bokashi produced with EMst and the control. Bokashi produced with only molasses and EM Bokashi decreased the number of root nematodes under greenhouse conditions compared to the control. Overall, the results confirmed the expected influence of composting on the degradation of organic material and the effect of compost application on plant growth. Hower, under the conditions of this study, EM showed no special effects in this, except for increasing the K concentrations in the leaves of young banana plants.     

Short-term uptake of <Superscript>15</Superscript>NH<Subscript>4</Subscript><Superscript>+</Superscript> into soil microbes and seedlings of pine,spruce and birch in potted soils

Short-term competition between soil microbes and seedlings of Scots pine (Pinus sylvestris L.), Norway spruce (Picea abies (L.) Karst.) and silver birch (Betula pendula Roth) for N was assessed in a pot study using (¹⁵NH₄)₂SO₄ as a tracer. Seedlings were grown in organic and mineral soil, collected from a podsol soil; 3.18 mg (¹⁵NH₄)₂SO₄ per pot were injected into the soil, corresponding to 4 µg ¹⁵N g^-1 d.m. (dry matter) mineral soil and 17 µg ¹⁵N g^-1 d.m. organic soil. The amounts of N and ¹⁵N in the seedlings and in microbial biomass derived from fumigation-extraction were measured 48 h after addition of ¹⁵N. In the mineral soil, 19–30% of the added ¹⁵N was found in the plants and 14–20% in the microbial biomass. There were no statistically significant differences between the tree species. In the organic soil, 74% of the added ¹⁵N was recovered in the microbial biomass in birch soil, compared to 26% and 17% in pine and spruce soils, respectively. Correspondingly, about 70% of the ¹⁵N was recovered in pine and spruce seedlings, and only 23% in birch seedlings. In conclusion, plants generally competed more successfully for added ¹⁵NH₄ ⁺ than soil microbes did. An exception was birch growing in organic soil, where the greater amount of available C from birch root exudates perhaps enabled micro-organisms to utilise more N.     

Microbial C,N, and P relationships in moisture‐stressed soils of Potohar,Pakistan

In 11 rain‐fed arable soils of the Potohar plateau, Pakistan, the amounts of microbial‐biomass C (C_mic), biomass N (N_mic), and biomass P (P_mic) were analyzed in relation to the element‐specific total storage compartment, i.e., soil C_org, N_t, and P_t. The effects of climatic conditions and soil physico‐chemical properties on these relationships were highlighted with special respect to crop yield levels. Average contents of soil C_org, N_t, and P_t were 3.9, 0.32, and 0.61 mg (g soil)^–1, respectively. Less than 1% of P_t was extractable with 0.5 M NaHCO₃. Mean contents of C_mic, N_mic, and P_mic were 118.4, 12.0, and 3.9 µg (g soil)^–1. Values of C_mic, N_mic, P_mic, soil C_org, and N_t were all highly significantly interrelated. The mean crop yield level was closely connected with all soil organic matter– and microbial biomass–related properties, but showed also some influence by the amount of precipitation from September to June. Also the fraction of NaHCO₃‐extractable P was closely related to soil organic matter, soil microbial biomass, and crop yield level. This reveals the overwhelming importance of biological processes for P turnover in alkaline soils.     

Rhizodeposition of maize: Short‐term carbon budget and composition

The aim of this study was to assess differences in rhizodeposition quantity and composition from maize cropped on soil or on 1:1 (w/w) soil–sand mixture and distribution of recently assimilated C between roots, shoots, soil, soil solution, and CO₂ from root respiration. Maize was labeled in ¹⁴CO₂ atmosphere followed by subsequent simultaneous leaching and air flushing from soil. ¹⁴C was traced after 7.5 h in roots and shoots, soil, soil solution, and soil‐borne CO₂. Rhizodeposits in the leachate of the first 2 h after labeling were identified by high‐pressure liquid chromatography (HPLC) and pyrolysis–field ionization mass spectrometry (Py‐FIMS). Leachate from soil–sand contained more ¹⁴C than from soil (0.6% vs. 0.4%) and more HPLC‐detectable carboxylates (4.36 vs. 2.69 μM), especially acetate and lactate. This is either because of root response to lower nutrient concentrations in the soil–sand mixture or decreasing structural integrity of the root cells during the leaching process, or because carboxylates were more strongly sorbed to the soil compared to carbohydrates and amino acids. In contrast, Py‐FIMS total ion intensity was more than 2 times higher in leachate from soil than from soil–sand, mainly due to signals from lignin monomers. HPLC‐measured concentrations of total amino acids (1.33 μM [soil] vs. 1.03 μM [soil–sand]) and total carbohydrates (0.73 vs. 0.34 μM) and ¹⁴CO₂ from soil agreed with this pattern. Higher leachate concentrations from soil than from soil–sand for HPLC‐measured carbohydrates and amino acids and for the sum of substances detected by Py‐FIMS overcompensated the higher sorption in soil than in sand‐soil. A parallel treatment with blow‐out of the soil air but without leaching indicated that nearly all of the rhizodeposits in the treatment with leaching face decomposition to CO₂. Simultaneous application of three methods—¹⁴C‐labeling and tracing, HPLC, and Py‐FIMS—enabled us to present the budget of rhizodeposition (¹⁴C) and to analyze individual carbohydrates, carboxylates, and amino acids (HPLC) and to scan all dissolved organic substances in soil solution (Py‐FIMS) as dependent on nutrient status.     

Methods for evaluating human impact on soil microorganisms based on their activity,biomass, and diversity in agricultural soils

The present review is focused on microbiological methods used in agricultural soils accustomed to human disturbance. Recent developments in soil biology are analyzed with the aim of highlighting gaps in knowledge, unsolved research questions, and controversial results. Activity rates (basal respiration, N mineralization) and biomass are used as overall indices for assessing microbial functions in soil and can be supplemented by biomass ratios (C : N, C : P, and C : S) and eco‐physiological ratios (soil organic C : microbial‐biomass C, qCO₂, qN_min). The community structure can be characterized by functional groups of the soil microbial biomass such as fungi and bacteria, Gram‐negative and Gram‐positive bacteria, or by biotic diversity. Methodological aspects of soil microbial indices are assessed, such as sampling, pretreatment of samples, and conversion factors of data into biomass values. Microbial‐biomass C (µg (g soil)^–1) can be estimated by multiplying total PLFA (nmol (g soil)^–1) by the F_PLFA‐factor of 5.8 and DNA (µg (g soil)^–1) by the F_DNA‐factor of 6.0. In addition, the turnover of the soil microbial biomass is appreciated as a key process for maintaining nutrient cycles in soil. Examples are briefly presented that show the direction of human impact on soil microorganisms by the methods evaluated. These examples are taken from research on organic farming, reduced tillage, de‐intensification of land‐use management, degradation of peatland, slurry application, salinization, heavy‐metal contamination, lignite deposition, pesticide application, antibiotics, TNT, and genetically modified plants.