Concurrent assessment of fish and habitat in warmwater streams in Wyoming

Abstract  Fisheries research and management in North America have focused largely on sport fishes, but native non-game fishes have attracted increased attention due to their declines. The Warmwater Stream Assessment (WSA) was developed to evaluate simultaneously both fish and habitat in Wyoming streams by a process that includes three major components: (1) stream-reach selection and accumulation of existing information, (2) fish and habitat sampling and (3) summarisation and evaluation of fish and habitat information. Fish are sampled by electric fishing or seining and habitat is measured at reach and channel-unit (i.e. pool, run, riffle, side channel, or backwater) scales. Fish and habitat data are subsequently summarised using a data-matrix approach. Hierarchical decision trees are used to assess critical habitat requirements for each fish species expected or found in the reach. Combined measurements of available habitat and the ecology of individual species contribute to the evaluation of the observed fish assemblage. The WSA incorporates knowledge of the fish assemblage and habitat features to enable inferences of factors likely influencing both the fish assemblage and their habitat. The WSA was developed for warmwater streams in Wyoming, but its philosophy, process and conceptual basis may be applied to environmental assessments in other geographical areas.     

Influences of local habitat and stream spatial position on fish assemblages in a dammed watershed,the Qingyi Stream,China

Abstract – Identifying the underlying mechanisms that explain the spatial variation in stream fish assemblages is crucial for the protection of species diversity. The influences of local habitat and stream spatial position on fish assemblages were examined from first‐order through third‐order streams within a dammed watershed, the Qingyi Stream, China. Based on linear regression models, the most important environmental variables influencing fish species richness were water temperature and wetted width, but stream spatial position variables were less important. Using canonical correspondence analysis, five environmental variables were identified to significantly influence fish assemblages, including three habitats (elevation, substrate and water depth) and two spatial variables (C‐link and Link). Our results suggest that, in a heavily dammed watershed, by blocking the migration routes of fishes, dams weaken the influence of stream spatial position on fish species richness. However, fish species compositions are significantly influenced by both local habitat environment and stream spatial position, which is perhaps owing to the distribution of fish species according to ecological requirements not related to spatial processes.     

Long-term patterns of microhabitat use by fish in a southern Appalachian stream from 1983 to 1992: effects of hydrologic period, season and fish length

Abstract— We quantified microhabitat use by members of a southern Appalachian stream fish assemblage over a ten-year period that included both floods and droughts. Our study site (37 m in length) encompassed riffle, run and pool habitats. Previous research indicated that species belonged to either benthic or water-column microhabitat guilds. Most species exhibited non-random microhabitat use in all seasons, and benthic and water column species generally were over-represented in the deeper portions of the site. In addition, water column species generally were over-represented in microhabitats with lower average velocities. The majority of seasonal shifts in microhabitat use were passive (i. e. correlated with changes in microhabitat availability), whereas, most shifts associated with hydrological periods appeared to be active responses to changing environmental conditions. Most species exhibited length-related shifts in microhabitat use, which were strongly affected by hydrologic period for four of ten species. Microhabitat use patterns of assemblage members appeared to be a consequence of species-specific responses to changing environmental conditions. The highly flexible patterns of microhabitat use exhibited by these species necessitate that decisions regarding their management be based on data covering a range of environmental conditions.     

Effects of small hydropower plants on fish assemblages in medium‐sized streams in central and northern Portugal

• 1. Over the last decade the development of small hydropower projects has been one of the most active areas of the energy sector. One of the main environmental challenges faced by such projects is related to fish passage.
• 2. The impact of 18 small hydropower plants (SHPs) with distinct levels of fish‐pass effectiveness was investigated in the summers of 1998 and 1999 by comparing fish assemblage composition and structure at 36 sites, above and below SHPs.
• 3. With regard to effectiveness, it was estimated that eight (44.4%) of the surveyed passage facilities were suitable for target species, whereas the remaining 10 (55.6%) were considered unsuitable. In neither case did the composition of fish assemblages upstream and downstream from SHPs differ significantly, while assemblage similarity was relatively high.
• 4. Multivariate techniques identified cover, depth and coarse substrate as the main parameters structuring fish assemblages. It is suggested that these variables have created a rich, patchy, heterogeneous habitat, thereby providing satisfactory resources and favourable conditions required by fish and contributing to the maintenance of assemblages.
• 5. Although populations of some species that occurred both upstream and downstream from SHPs have developed differences in their size structures, SHP‐induced fragmentation of fish populations may not necessarily result in genetic divergence among semi‐isolated populations.

Copyright © 2006 John Wiley & Sons, Ltd.     

The effects of wood on stream habitat and native fish assemblages in New Zealand

Historic deforestation has deprived many river systems of their natural wood loadings. To study the effects of the loss of wood from waterways, a field trial was conducted in three small forested streams in New Zealand. The objectives were to (i) examine differences in fish assemblages among wooded pools (where wood provided cover), open pools and riffles and (ii) measure the effects of wood removal on channel morphology and fish assemblages. In the first part of the study, no significant differences were found in total fish density among the three habitats. However, total fish biomass was significantly higher in wooded pools (64% of total fish biomass) compared with open pools and riffles. Mean density and biomass of banded kokopu (Galaxias fasciatus) and mean biomass of longfin eel (Anguilla dieffenbachii) were highest in wooded pools, whereas the density and biomass of bluegill bully (Gobiomorphus hubbsi) and torrentfish (Cheimarrichthys fosteri) were highest in riffles. In the second part of the study, wood was removed from a 200‐m section (treatment) in each stream, significantly reducing pool area and increasing the proportion of channel area and length in riffles. At the habitat scale, banded kokopu and large longfin eel were the two species mostly affected by wood removal. At the reach scale, banded kokopu biomass was significantly lower in the treatment sections. Although wooded pools were a small portion of total habitat, they provided important habitat for two of New Zealand's larger native fish taxa.     

High temporal species turnover enhances the complexity of fish assemblages in Amazonian Terra firme streams

Abstract –  The objective of this study was to quantify fish species diversity in Terra firme streams of the Río Amazonas drainage. Fish diversity was quantified as the number of species collected or species richness in two sites of Yahuarcaca stream, a typical, first order tributary of the central Río Amazonas near Leticia (Colombia). The extremely high species richness recorded, 131 and 133 for the two study sites for a total of 171 species, was primarily due to species of low abundance (rare species) mostly with adults <5 cm in total length. The nonasymptotic tendencies of accumulated species richness over time for the 1999 samples at the two study sites and for the combined samples of 1999, 2001 and 2005 at site 2 suggested that the real number of fish species may be still greater. These findings emphasise the importance of long-term sampling designs to quantify species richness in these systems. Terra firme streams actually sustain greater fish richness than previously reported for similar sized streams that in turn, represent a substantial per cent of the total species richness reported for vast areas of the main stem of Río Amazonas including tributaries and lakes. Terra firme streams should be considered critical hotspots for conservation and management efforts which are urgently needed given the rapid development of ornamental fisheries on small streams throughout Río Amazonas drainage.     

Big impacts from small abstractions: The effects of surface water abstraction on freshwater fish assemblages

1. Abstractions and diversions are prevalent in river networks worldwide; however, specific mechanisms and measures reflecting changes in functional characteristics of aquatic assemblages in response to flow abstraction have not been well established. In particular, the influence of small takes on fish assemblages is poorly understood.
2. Field surveys and stable‐isotope analyses were used to evaluate the impact of differing levels of flow abstraction on fish assemblage structure, and native–non‐native patterns of coexistence, associated with small surface water abstractions in four streams in New Zealand. Study design accounted for longitudinal processes (spatial autocorrelation) to isolate the effects of abstractions on fish assemblages.
3. Reaches with reduced flows downstream of abstraction points had significantly lower fish abundances per metre of stream length, probably because of decreased habitat size, altered interspecific interactions and barriers to movement. The loss of larger fish in reaches with high abstraction resulted in shallower mass–abundance slopes and shorter stable isotope‐derived food‐chain lengths, likely to have been caused by fewer trophic links in the food web. The large fish absent from these reaches were flow‐sensitive introduced salmonids, resulting in higher relative abundances of small‐bodied native fish, probably as a result of predatory and competitive release.
4. Quantification of metrics designed to characterize ecosystem functioning as well as abundance and species composition indicated that small water abstractions can alter both the structure and composition of stream fish assemblages and modify the outcomes of native–non‐native species interactions. Thus, a better understanding of the effects of small abstractions could be used to improve the strategic management of fish in invaded riverscapes.

     

Relationships between fish assemblages and habitat characteristics in Iowa’s non‐wadeable rivers

Abstract Non‐wadeable river systems are some of the most diverse aquatic ecosystems, but little work has been conducted to quantify the relationships between fish assemblages and habitat characteristics in them. In 2007 and 2008, 21 reaches were sampled on 16 non‐wadeable rivers across Iowa, USA. Fish were sampled in each reach with three different gears, and habitat characteristics (channel morphology, current velocity, instream cover) were measured using standard procedures. Fish assemblages were structured based on drainage basin and reaches and could be categorised as belonging to one of three groups. Reaches in the Missouri River basin group were narrow and had a high proportion of fine substrate. Reaches in the Mississippi River A group were also narrow but had a high proportion of large rocky substrate. Reaches in the Mississippi River B group tended to be wider, deeper and have higher proportions of fine substrate than the other groups. Fish assemblages were closely related to habitat characteristics and reflected differences among the three groups. Results of this study suggest that stream geomorphology may have a substantial influence on fish assemblage structure in large rivers.     

Associations between stream hydrogeomorphology and co‐dependent mussel–fish assemblages: evidence from an Ohio,USA river system

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Effects of mangrove deforestation on fish assemblage at Pak Phanang Bay,southern Thailand

Daytime sampling using a seine net was conducted at Pak Phanang Bay (Nakhon Si Thammarat Province, Thailand) in February and July 2006, to determine differences in fish assemblage structures between a mangrove site and an adjacent site completely cleared of mangroves. The overall numbers of fish species and individuals were significantly higher at the mangrove site than the cleared site in both months. Although benthic crustacean feeders showed more species and individual numbers at the mangrove site in both months, the opposite was found for zooplankton feeders. A cluster analysis, based on the abundance of each species, demonstrated that the fish assemblage structures were distinctly different between the two sites. In addition, significant differences in length frequency distributions for each of the four most abundant species were found between the sites in February and/or July. Small individuals of Scatophagus argus, Ambassis nalua, and Tetraodon nigroviridis were more common at the mangrove site, and of Chelon subviridis at the cleared site. These results suggest that mangrove deforestation exerts marked effects on fish assemblages.     

Effects of within-patch habitat structure and variation on fish assemblage characteristics in the Bernecei stream, Hungary

Abstract –  Over a 3-year period we examined variability in physical habitat structure and species richness, abundance and assemblage composition of fishes in 13 habitat patches in the Bernecei stream, Hungary. Principal component analysis of habitat structure data from patches elucidated a riffle-run-pool habitat gradient across patches. Temporal habitat variability increased significantly from riffle to pool patches. Fish assemblage characteristics displayed relatively continuous change over the habitat gradient and were relatively stable within patches. Assemblage structure properties (e.g., species richness) displayed different responses to the habitat gradient and to within-patch habitat variability. In general, pool patches had more diverse assemblages and greater within-patch assemblage variability than riffle patches. However, within-patch dynamics were largely determined by the population dynamics of a habitat generalist (i.e., minnow). Broad scale environmental variability (i.e., a catastrophic 100-year flood) also appeared to affect within-patch fish assemblage characteristics. Our results demonstrate that fish assemblage structure is influenced by physical variability (i.e., both floods and spatio-temporal habitat variability) within the Bernecei stream.     

Relative importance of local and landscape variables on fish assemblages in streams of Brazilian savanna

Understanding variability in the composition of aquatic assemblages requires a multiscale perspective, since processes operating at different spatial scales (from regional to local) drive the community assembly. Here, the relative importance of environmental variables on fish species composition in streams of the Brazilian savanna (Cerrado) is assessed and quantified at local and landscape scales. The importance of both local and landscape environmental variables in structuring fish assemblages was supported. Local variables explained a substantially higher amount of variance of fish assemblages than landscape variables. However, the shared explanation indicate that landscape variables had a complementary effect. The streams sampled were mostly headwaters at similar altitudes and with similar watershed sizes, so the sensitivity of the fish assemblages, even to small landscape gradients, is highlighted. Maintaining these important instream habitat characteristics close to natural conditions seems to be essential for conserving stream fish species, and for this, the landscape context should be taken into account. Considering the near‐pristine condition of the streams studied, these findings can be used as a reference for further studies addressing the effects of human modifications on stream fish biodiversity of the Cerrado.     

Spatial organisation of fish assemblages in the Chishui River,the last free‐flowing tributary of the upper Yangtze River,China

The Chishui River is the last free‐flowing tributary of the upper Yangtze River, China, which has an important role in fish conservation. This study aimed to explore the spatial organisation of fish assemblages in this river. Field sampling was conducted biannually between 2015 and 2017 at 41 sites from its headwater and downstream. One hundred and twenty‐two fish species were captured, including 34 endemic, 15 threatened and six exotic species. Fish assemblages varied significantly along the longitudinal gradient. Based on cluster and ordination analyses, 41 sampling sites could be divided into five site‐groups, corresponding to the headwater, upstream, midstream, downstream and the Xishui‐branch, respectively. The splitting of fish assemblages was consistent with the geographical divisions. However, fish species changed gradually along the longitudinal gradient rather than abruptly, which was consistent with the River Continuum Concept (RCC). In the headwaters and upstream, fish assemblages were mainly dominated by cold‐water and rheophilic species, while in the lower stretches, fish assemblages were dominated by warm‐water and limnophilic species. According to null models, fish assemblages were significantly nonrandomly structured at the basin scale, but randomly structured at the regional scale. This study is an important step in understanding the assembly rules of fish assemblages in this free‐flowing river and provides useful information for future fish conservation and ecological restoration.     

Composition and spatial organization of fish assemblages in the lower Guadiana basin, southern Iberia

Abstract— A survey of fish assemblages (composition and spatial organization) was made in the lower Guadiana basin (southern Iberia) during the summer of 1994. A total of 6937 specimens belonging to 18 species were collected in 44 channel units and 30 sites (i. c. a series of channel units), comprising all the freshwater species previously recorded in the area except the exotic Esox lucius and the endemic endangered cyprinid Anaecypris hispanica. The endemic cyprinids Chondrostoma lemmingii and Barbus sclateri were rarely encountered, whereas the exotic Lepomis gibbosus was the predominant species found. The lower Guadiana fish community changed in space from assemblages characterized by the high relative abundances of Leuciscus pyrenaicus , smaller size-classes of Barbus spp. and Tropidophoxinellus alburnoides (all Iberian endemisms), to assemblages characterized by the high relative abundances of L. gibbosus, Micropterus salmoides, Cichlasoma facetum (all exotic species) and the larger size-classes of Barbus comiza and Barbus microcephalus . The former assemblages used smaller (i. e., narrow and shallow) sites and channel units, usually in tributaries and closer to headwaters, with smaller L. pyrenaicus being dominant in sites located in the tributaries discharging to the brackish Guadiana. This group was also related to channel units rich in emergent macropthytes. The latter assemblages were related to the largest sites and channel units, typically found in the main river or in tributary sites far from the source. Besides these two groups, some species were associated to noticeable environmental conditions; Blennius fluviatilis to channel units with current velocity and heterogeneous substrate, typically found in the main river, and Cobitis paludica to channel units with heterogeneous substrate.     

Fish assemblages in Atlantic Forest streams: the relative influence of local and catchment environments on taxonomic and functional species

Streams are under environmental pressures acting at different scales that influence the ecological organisation of their fish assemblages. However, the relative influence of the different scale‐related variables on assemblage composition and function is poorly understood. We evaluated the importance of local‐ and catchment‐scale environmental variables, as well as the spatial structure of the sampling sites, in shaping fish assemblages in Atlantic Forest streams. Local‐scale variables were those measured at the sampling sites, describing the local habitat conditions (e.g. depth, substrate type, altitude). Catchment‐scale variables were those integrating the upstream landscape of the sampling sites (e.g. catchment land use). Spatial distances were calculated from watercourse distance using principal coordinates of neighbour matrices. Altogether, 28 local and seven catchment variables were initially subjected to two processes of eliminating co‐linearity. Redundancy analysis was applied to the three matrices (spatial, local and catchment) to quantify the variance in the structure of the fish assemblages explained by each matrix. Local variables explained more variability in both taxonomic and functional assemblage structure, than catchment and spatial variables. Local variables also changed along the longitudinal gradient, which consequently influenced fish assemblage structure. This pattern was also influenced by anthropogenic alteration and non‐native species, which were more abundant in downstream sites. These results highlight the need to assess Atlantic Forest streams under different environmental scales, especially through the use of quantitative local‐scale metrics, and to consider the effects of longitudinal patterns in structuring fish assemblages when developing and implementing monitoring programmes, impact studies and conservation plans.     

东海高营养层次鱼类功能群及其主要种类

在2000年秋季和2001年春季东海120°~126.75°N、25.75°~31°E范围内的两次大面积调查基础上,以占渔获量90%的鱼类为研究对象,分析东海春、秋两季2个鱼类群落的功能群。结果表明,东海高营养层次鱼类群落包括7个功能群,即鱼食性鱼类、虾/鱼食性鱼类、虾食性鱼类、虾蟹食性鱼类、底栖动物食性鱼类、浮游动物食性鱼类和广食性鱼类。其中东海近海春季鱼类种群由浮游动物食性鱼类、底栖动物食性鱼类、鱼食性鱼类和虾食性鱼类4个功能群组成,秋季鱼类种群由虾/鱼食性鱼类、虾食性鱼类、广食性鱼类、虾蟹食性鱼类、鱼食性鱼类和浮游动物食性鱼类6个功能群组成;东海外海春季鱼类种群由鱼食性鱼类、底栖动物食性鱼类、浮游动物食性鱼类和虾食性鱼类4个功能群组成,秋季鱼类种群由浮游动物食性鱼类、虾/鱼食性鱼类、鱼食性鱼类、虾食性鱼类和底栖动物食性鱼类5个功能群组成。从生物量组成上分析,在各鱼类群落中发挥主要作用的功能群不同,春季东海鱼类群落以浮游动物食性鱼类功能群为主,而秋季以鱼食性鱼类功能群为主。其中带鱼、白姑鱼、六丝矛尾■虎鱼、多棘腔吻鳕、龙头鱼、小黄鱼、细条天竺鱼、发光鲷、、花斑蛇鲻、短鳍红娘鱼、竹荚鱼、条尾绯鲤、黄鳍马面、黄条等15种鱼为各功能群的主要种类。群落种类组成的差异,同种类体长分布的差异,以及饵料基础的时空变化是导致东海各鱼类群落功能群组成差异的主要原因。     

The status of host fish populations and fish species richness in European freshwater pearl mussel (Margaritifera margaritifera) streams

• 1. The status of host fish populations and fish species richness was investigated at 36 sites of 20 extant freshwater pearl mussel populations, including the drainages of the Elbe, Danube, Rhine, Weser, Aulne, Kemijoki and Tuuloma in Germany, the Czech Republic, France and Finland, by carrying out comparative electrofishings.
• 2. Brown trout (Salmo trutta f. fario) were found to be the available host fish for pearl mussels in all except one of the streams investigated with mean densities of 2861 ha^?1 (range 0–8710 ha^?1) and a mean biomass of 119 kg ha^?1 (range 0–478 kg ha^?1). Streams that had been frequently stocked with brown trout had higher trout biomass and densities of host fish than natural populations, but trout stocking had no positive effect in two of the streams investigated.
• 3. Fish species richness ranged from 2 to 16 species per stream and showed a negative correlation with host fish biomass and host fish densities. Undisturbed oligotrophic pearl mussel headwater streams usually only yielded a low number of fish species. Habitat degradation can reduce competitiveness of specialized trout and result in an increased abundance of ubiquitous or atypical species.
• 4. A link between the lack of juvenile pearl mussels and a lack of suitable host fish was only rarely observed. Functional pearl mussel populations with relatively high numbers of juveniles had significantly lower densities and biomass of host fish than pearl mussel populations without recent recruitment.
• 5. This study suggests that 0+ host fish are not necessarily required to sustain functional pearl mussel populations. Low densities of host fish can be compensated by the higher glochidia carrying capacity of older host fish with limited previous contact with pearl mussel glochidia, by the long reproductive period of mussels, and by low mortality rates of juvenile mussels during their post‐parasitic phase.

Copyright © 2005 John Wiley & Sons, Ltd.     

Effects of fish species richness and assemblage composition on stream ecosystem function

Abstract –  Biodiversity is declining across aquatic ecosystems because of biological invasions and species extinctions. Because fishes have pervasive effects on ecosystems through species-specific food web interactions, alterations to species and functional richness, and composition of natural assemblages could have negative effects on aquatic ecosystem function. In this study, I tested the effects of fish species and functional richness, and assemblage composition on primary production (PPR), benthic invertebrate density, and benthic particulate organic matter (BPOM) in a 42-day experiment in artificial stream mesocosms. I found that fish species richness and assemblage composition were important predictors of PPR in stream mesocosms. However, the effect of species richness on PPR increased with time, suggesting that richness-related effects might strengthen as the magnitude of community-level interactions increases in ecosystems. There was no effect of fish species or functional richness or assemblage composition on benthic invertebrate densities or BPOM. These data provide additional support that fishes can be important regulators of ecosystem function in aquatic systems, and suggest that positive effects of fishes on ecosystems can be strengthened by increased species richness and composition of the assemblage. This study broadens the applicability of the biodiversity ecosystem-function literature to a new suite of taxa, supporting the overall hypothesis that ecosystem functions and services are likely to decline in response to species extinctions.