Spatial and temporal patterns in fish communities along the Illinois River

Abstract –  Fish abundance data from a fish population study (1957–2000) on the Illinois River, IL, USA were used to assess community structure. There was considerable variability among reaches and years, but three distinct fish communities were identified encompassing both temporal and spatial aspects. Temporal community shifts in the upper half of the river created two distinct fish communities, one prior to 1983 and the other after 1983. This is believed to be in response to improved water quality, albeit the responses were delayed for several years after policy implementation. The third group (Lower River) was spatially separated from the two upper river groups. These differences may reflect a combination of water quality (e.g., pollution) and habitat issues (e.g., geomorphology), common to many regulated rivers. Fish community responses in larger rivers may have considerable temporal lags after implementation of management or restoration activities that warrant strong consideration during any planning process.     

Spatial patterns of lacustrine fish assemblages in a catchment of the Mississippi Alluvial Valley

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Priority habitats for the conservation of large river fish in the Ganges river basin

• 1. Three classes of habitat used by groups of fish species classified as conservation and management priorities were developed for the Gerua River (also known as the Girwa River, Karnali River) in the Ganges river basin. This river is large (mean annual discharge ca 1500 m³ s^?1, up to 900 m wide), surrounded by protected lands of India and Nepal, and upstream of major diversions and river alterations.
• 2. Fish and habitat sampling was conducted at 45 sites from 2000 to 2003. Data were analysed for 2172 fish of 14 species. Species and life stages found occupying a statistically distinct subset of the river habitats were grouped to identify classes of river habitat for conservation.
• 3. Most species and life‐stage groups specialized on specific habitat conditions revealed by multivariate analyses of variance and a principal component analysis. The most numerous and diverse group (six species, 15 life stages) was associated with deep depositional habitats with sandy substrate. Two species covering three life stages were primarily oriented to erosional habitat marked by fast current velocity with pebble and cobble substrate. A third group of three species of adults and juveniles were intermediate in habitat use.
• 4. River conservation for fish faunas should maintain both erosional and depositional channel habitats with depths, substrates, and current velocity inclusive of the ranges reported. The erosional and depositional nature of the key habitats requires that rivers be maintained with flows capable of channel‐forming functions.

Copyright © 2006 John Wiley & Sons, Ltd.     

Role of large‐ and fine‐scale variables in predicting catch rates of larval Pacific lamprey in the Willamette Basin,Oregon

Pacific lamprey Entosphenus tridentatus is an anadromous fish native to the Pacific Northwest of the USA. That has declined substantially over the last 40 years. Effective conservation of this species will require an understanding of the habitat requirements for each life history stage. Because its life cycle contains extended freshwater rearing (3–8 years), the larval stage may be a critical factor limiting abundance of Pacific lamprey. The objective of our study was to estimate the influence of barriers and habitat characteristics on the catch‐per‐unit‐effort (CPUE) of larval Pacific lamprey in the Willamette River Basin, Oregon, USA. We sampled lampreys at multiple locations in wadeable streams throughout the basin in 2011–13 and used an information theoretic approach to examine the relative influence of fine‐ and large‐scale predictors of CPUE. Pacific lamprey was observed across the basin, but its relative abundance appeared to be limited by the presence of natural and artificial barriers in some sub‐basins. Lower velocity habitats such as off‐channel areas and pools contained higher densities of larval lamprey; mean Pacific lamprey CPUE in off‐channel habitats was 4 and 32 times greater than in pools and riffles respectively. Restoration and conservation strategies that improve fish passage, enhance natural hydrologic and depositional processes and increase habitat heterogeneity will likely benefit larval Pacific lamprey.     

Habitat use of age 0 Alabama shad in the Pascagoula River drainage, USA

Mickle PF, Schaefer JF, Adams SB, Kreiser BR. Habitat use of age 0 Alabama shad in the Pascagoula River drainage, USA. Ecology of Freshwater Fish 2010: 19: 107–115. © 2009 John Wiley & Sons A/S
Abstract – Alabama shad ( Alosa alabamae ) is an anadromous species that spawns in Gulf of Mexico drainages and is a NOAA Fisheries Species of Concern. Habitat degradation and barriers to migration are considered contributing factors to range contraction that has left just the Pascagoula River drainage population in Mississippi. We studied juvenile life history and autecology in three rivers within the drainage. We collected fish, habitat and physicochemical data in three habitat types (sandbar, open channel and bank) from June to October 2004–2006. Sandbar habitat was favoured by smaller individuals early in the year. Catch per unit effort (CPUE) decreased through the summer as larger fish began occupying bank and open channel habitat. The most parsimonious model of abundance included year and river variables, while patterns of presence and absence were best explained by river, habitat type and physiochemical variables. While all three rivers in the drainage contained Alabama shad, fish were less abundant and had lower condition values in the Chickasawhay River. Earlier work suggested the Alabama shad may gradually move downstream towards the Gulf of Mexico in their first year. However, we found no evidence of this and captured large fish high in the drainage late in the year.     

Are River Styles ecologically meaningful? A test of the ecological significance of a geomorphic river characterization scheme

• 1. Classification is a useful tool for researchers and managers wishing to group functionally similar sites or to identify unique or threatened habitats. A process‐based river classification scheme that successfully integrates physical and biological aspects of lotic form and function would enhance conservation and restoration efforts by allowing more meaningful comparisons among sites, and improving functional understanding of lotic ecosystems.
• 2. The River Styles framework provides a geomorphological river characterization scheme in which assemblages of geomorphic units vary for differing River Styles, presenting differing arrays of aquatic habitat diversity for each style.
• 3. The ecological significance of the River Styles framework is tested by comparing the macroinvertebrate assemblages and habitat characteristics of pool and run geomorphic units for three different River Styles on the north coast of New South Wales, Australia.
• 4. Multivariate ordinations and analysis of similarity (ANOSIM) revealed that macroinvertebrate community structure differed between Bedrock‐Controlled Discontinuous Floodplain rivers and Gorge rivers, and between Bedrock‐Controlled Discontinuous Floodplain and Meandering Gravel Bed rivers, especially in pools. Differences between Gorge and Meandering Gravel Bed rivers were less apparent, largely due to variations within the Meandering Gravel Bed rivers group.
• 5. The variability in macroinvertebrate assemblage structure among geomorphic units was most strongly related to variability in substrate and hydraulic variables. Substrate composition differed significantly among all River Styles and geomorphic units, but other habitat variables showed few consistent differences among River Style groups.
• 6. These results suggest that the ecological similarity of macroinvertebrate communities within River Styles may presently be limited because some important large‐scale drivers of local habitat conditions are not included in River Styles designations. Integrating River Styles classification with other large‐scale variables reflecting stream size, temperature and hydrological regime may produce a process‐based physical classification capable of identifying river reaches with similar ecological structure and function.

Copyright © 2003 John Wiley & Sons, Ltd.     

Changes in river fish assemblages associated with vegetated and degraded banks, upstream of and within nutrient-enriched zones

Fish assemblages in two reaches of the Hawkesbury–Nepean River were studied to determine the separate and combined effects of modifications to the riparian vegetation and nutrient enrichment on the composition of fish assemblages. Fish were sampled along vegetated and degraded banks where no vegetation was present, and upstream of and within zones of nutrient enrichment, associated with discharge of treated sewage effluent into the river and run-off from nearby urban areas. Although the species composition differed between river reaches, both the number of fish species and total fish abundance were significantly greater in habitats adjacent to vegetated banks. Five species [ Anguilla reinhardtii Steindachner , Macquaria novemaculeata (Steindachner) , Cyprinus carpio L. , Hypseleotris compressa (Krefft) and Myxus petardi (Castelnau)] were significantly ( P < 0.05) affected by riparian degradation, with mean abundances ranging from 3.3 to 13.0 times larger than adjacent to vegetated banks. Species richness, total abundance and abundance of M. novemaculeata and H. compressa were also higher in zones with low levels of nutrient enrichment. Multivariate analyses showed that while eutrophication has a major effect on fish assemblages in the Hawkesbury–Nepean River, even greater effects may result from clearing of riparian vegetation leading to bank degradation.     

Beaver dams shift desert fish assemblages toward dominance by non‐native species (Verde River,Arizona, USA)

The reintroduction of beaver (Castor canadensis) into arid and semi‐arid rivers is receiving increasing management and conservation attention in recent years, yet very little is known about native versus non‐native fish occupancy in beaver pond habitats. Streams of the American Southwest support a highly endemic, highly endangered native fish fauna and abundant non‐native fishes, and here we investigated the hypothesis that beaver ponds in this region may lead to fish assemblages dominated by non‐native species that favour slower‐water habitat. We sampled fish assemblages within beaver ponds and within unimpounded lotic stream reaches in the mainstem and in tributaries of the free‐flowing upper Verde River, Arizona, USA. Non‐native fishes consistently outnumbered native species, and this dominance was greater in pond than in lotic assemblages. Few native species were recorded within ponds. Multivariate analysis indicated that fish assemblages in beaver ponds were distinct from those in lotic reaches, in both mainstem and tributary locations. Individual species driving this distinction included abundant non‐native green sunfish (Lepomis cyanellus) and western mosquitofish (Gambusia affinis) in pond sites, and native desert sucker (Catostomus clarkii) in lotic sites. Overall, this study provides the first evidence that, relative to unimpounded lotic habitat, beaver ponds in arid and semi‐arid rivers support abundant non‐native fishes; these ponds could thus serve as important non‐native source areas and negatively impact co‐occurring native fish populations.     

Life‐history differences of juvenile Chinook salmon Oncorhynchus tshawytscha across rearing locations in the Shasta River,California

Salmon from different locations in a watershed can have different life histories. It is often unclear to what extent this variation is a response to the current environmental conditions an individual experiences as opposed to local‐scale genetic adaptation or the environment experienced early in development. We used a mark–recapture transplant experiment in the Shasta River, CA, to test whether life‐history traits of juvenile Chinook salmon Oncorhynchus tshawytscha varied among locations, and whether individuals could adopt a new life history upon encountering new habitat type. The Shasta River, a Klamath River tributary, has two Chinook salmon spawning and juvenile rearing areas, a lower basin canyon (river km 0–12) and upper basin spring complex (river km 40–56), characterised by dramatically different in‐stream habitats. In 2012 and 2013, we created three experimental groups: (i) fish caught, tagged and released in the upper basin; (ii) fish caught at the river mouth (confluence with the Klamath River, river km 0), tagged and released in the upper basin; and (iii) fish caught at the river mouth, tagged and released in the lower basin. Fish released in the upper basin outmigrated later and at a larger size than those released in the lower basin. The traits of fish transplanted to the upper basin were similar to fish originating in the upper basin. Chinook salmon juvenile life‐history traits reflected habitat conditions fish experienced rather than those where they originated, indicating that habitat modification or transportation to new habitats can rapidly alter the life‐history composition of populations.     

Land cover,riparian zones and instream habitat influence stream fish assemblages in the eastern Amazon

The Amazon rainforest has experienced rapid land‐use changes over the last few decades, including extensive deforestation that can affect riparian habitats and streams. The aim of this study was to assess responses of stream fish assemblages to deforestation and land cover change in the eastern Amazon. We expected that percentage of forest in the catchment is correlated with local habitat complexity, which in turn determines fish assemblage composition and structure. We sampled 71 streams in areas with different land uses and tested for relationships between stream fish assemblages and local habitat and landscape variables while controlling for the effect of intersite distance. Fish assemblage composition and structure were correlated with forest coverage, but local habitat variables explained more of the variation in both assemblage composition and structure than landscape variables. Intersite distance contributed to variance explained by local habitat and landscape variables, and the percentage of variance explained by the unique contribution of local habitat was approximately equivalent to the shared variance explained by all three factors in the model. In these streams of the eastern Amazon, fish assemblages were most strongly influenced by features of instream and riparian habitats, yet indirect effects of deforestation on fish assemblage composition and structure were observed even though intact riparian zones were present at most sites. Long‐term monitoring of the hydrographic basin, instream habitat and aquatic fauna is needed to test for potential legacy effects and time lags, as well as assess species responses to continuing deforestation and land‐use changes in the Amazon.     

Longitudinal distribution of uncommon fishes in a species‐rich basin

1. The spatial organization of fishes in a river system was investigated to evaluate the longitudinal distribution of uncommon species. It was anticipated that overall richness of the fish community would increase in a downstream direction together with habitat extent, but that more uncommon species would occur upstream owing to greater heterogeneity among sites.
2. Fish were collected between 1995 and 2014 at 85 sites distributed throughout the Duck River Basin, Tennessee, USA. A site usually consisted of four habitat types: riffles, runs, pools and shoreline. Each habitat type was sampled with a multipass electrofishing protocol.
3. In all, 136 native fish species were collected. Of these, 71% were classified as uncommon but represented only 16% of the total count of fish collected. As expected, overall species richness increased downstream, but contrary to expectation, uncommon species did too. Some uncommon species were restricted exclusively to tributaries and headwaters, some to tributaries and mainstem, many to mainstem only, but the largest fraction of uncommon species occurred throughout the basin, but even this last group increased in richness downstream.
4. Conservation often focuses on uncommon species. This study suggests that a greater number of uncommon species can be conserved with an emphasis on large downstream reaches, which not only include more aquatic habitat to support larger concentrations of fish, but also shelter the uncommon species that tend to require the most protection.

     

沱江中游鱼类资源现状及多样性

为探究“十年禁渔”前沱江中游江段鱼类资源和物种多样性，于2017—2020年对该江段鱼类资源进行了8次调查，并对鱼类种类组成、生态类型、群落相似度、种群优势度、生物多样性以及群落结构稳定性等特征进行分析。结果显示，本次调查共采集鱼类87种，隶属于5目14科52属。其中，长江上游特有鱼类18种，外来物种6种，分别占总种类数的20.69%和6.90%。鱼类群落以底层、缓流型、产沉性卵、杂食性鱼类为主。相对重要性指数(IRI)显示，蛇、鲤等中小型鱼类为优势种。Shannon-Wiener指数、Simpson指数、Margalef指数、Pielou指数变化范围分别为2.700～3.742、0.873～0.968、5.374～11.323、0.737～0.887，表明沱江中游鱼类群落分布均匀。等级聚类分析(Cluster)和非度量多维尺度分析(NMDS)显示，在一定的相似性水平上，沱江中游江段鱼类的群落类型基本可分为3组，莲花山、麻柳坝工业园与铁路沟可以聚为一组，万古庙、五里店水电站、资州大桥、银山镇、二水厂与西林渡口聚为一组，沱桥独立成组。数量/生物量比较曲线分析结果显示，西林渡口和沱桥江段鱼...     

Conservation of fish communities: Extending the ‘research life cycle’ by achieving practical effects

1. This article highlights the practical impact of our 2018 Aquatic Conservation: Marine and Freshwater Ecosystems publication, ‘Importance of peripheral basins: Implications for the conservation of fish assemblages’, which described fish communities in a Polish river.
2. Data on the fish assemblages of the Dniester River (Black Sea basin) are scarce; however, evidence indicates that the assemblages have declined. In our 2018 study, we hypothesized that the peripheral basin (the small basin on the edge) of the larger Upper Dniester River basin (the Strwi?? River) could maintain good ecological status and contained unique fish assemblages.
3. To examine the influence of historical factors and assess the role of peripheral basins on fish conservation, data from the Strwi?? basin were compared with the adjacent but unconnected Wiar basin (the Vistula basin; Baltic Sea basin). The Strwi?? River fish assemblages featured higher species richness and a greater number of native Ponto–Caspian species that function near the edge of their ranges.
4. This article focuses on four impacts of the 2018 publication: increasing awareness by various groups and organizations of the unique character of the surveyed river basin; highlighting important issues in assessing the ecological status of European rivers; driving the red‐listing of species and the development of stream fish conservation strategies; and identifying possible future impacts.
5. Our 2018 publication demonstrated the value of studying peripheral basins, which may affect conservation strategy development and encourage study of the importance of other peripheral basins and their role in aquatic resources conservation. Our article influenced the interpretation of fish‐based biotic indices and the conduct of monitoring work and its evaluation. It also strongly emphasized the native origin of the racer goby (Babka gymnotrachelus) in the Strwi?? River, which was important for subsequent works seeking to change the legal status of the species in Poland.

     

The relationship of environmental factors to spatial and temporal variation of fish assemblages in a floodplain river in Texas, USA

Abstract –  Spatial and temporal variation of species–environment relationships were evaluated for shallow-margin and deep-water fish assemblages in the Brazos River, a large floodplain river in Texas, USA. Total variation among the deep-water assemblages (11 species, 86% turnover across gill net samples) was greater than for shallow-margins (38 species, 64% turnover across seine samples). For both shallow-margin and deep-water assemblages, variation was greater among sites than between winter and summer seasons. Shallow-margin assemblage structure was related to depth, velocity and substrate, whereas for deep-water assemblages river discharge, temperature and velocity were important. Season itself accounted for little of the variation among either shallow (6.7%) or deep-water (2.3%) assemblages. Overall temporal patterns of shallow-margin samples appeared to show responses to juvenile recruitment, spates and migration of coastal fishes, whereas for deep-water samples, patterns related to use of reproductive habitats, juvenile recruitment and seasonal activity levels. Brazos River assemblages were less variable overall in comparison with studies along similar length of reach in headwater streams and wadeable rivers. The residual variation in species distribution (54% for shallow-margin and 67% for deepwater) that was not explained by instream variables and season suggests a greater influence of biotic interactions in rivers, particularly those across the spatially dynamic interface of main channel habitats and shallow river margins.     

Spatial organisation of fish assemblages in the Chishui River,the last free‐flowing tributary of the upper Yangtze River,China

The Chishui River is the last free‐flowing tributary of the upper Yangtze River, China, which has an important role in fish conservation. This study aimed to explore the spatial organisation of fish assemblages in this river. Field sampling was conducted biannually between 2015 and 2017 at 41 sites from its headwater and downstream. One hundred and twenty‐two fish species were captured, including 34 endemic, 15 threatened and six exotic species. Fish assemblages varied significantly along the longitudinal gradient. Based on cluster and ordination analyses, 41 sampling sites could be divided into five site‐groups, corresponding to the headwater, upstream, midstream, downstream and the Xishui‐branch, respectively. The splitting of fish assemblages was consistent with the geographical divisions. However, fish species changed gradually along the longitudinal gradient rather than abruptly, which was consistent with the River Continuum Concept (RCC). In the headwaters and upstream, fish assemblages were mainly dominated by cold‐water and rheophilic species, while in the lower stretches, fish assemblages were dominated by warm‐water and limnophilic species. According to null models, fish assemblages were significantly nonrandomly structured at the basin scale, but randomly structured at the regional scale. This study is an important step in understanding the assembly rules of fish assemblages in this free‐flowing river and provides useful information for future fish conservation and ecological restoration.     

Fish assemblage structure in relation to seasonal environmental variation in sub‐lakes of the Poyang Lake floodplain,China

The Yangtze River and its watershed have undergone vast changes resulting from centuries of human impacts, yet ecological knowledge of the system is limited. The seasonal variation and spatial variation of three sub‐lakes of Poyang Lake, a huge wetland in the middle Yangtze Basin, were investigated to examine how fish assemblages respond to seasonal hydrology and associated environmental conditions. In all three sub‐lakes, fish assemblage structure revealed strong variations associated with seasonal water level fluctuation. Fish species richness in all sub‐lakes was highest during the middle of the monsoon season and lowest during the dry season. Fish numerical abundance and biomass varied significantly, with several of the most common species having inconsistent patterns of seasonal variation among sub‐lakes. Fish assemblage structure was significantly associated with environmental gradients defined by water level, aquatic macrophyte coverage, conductivity and dissolved oxygen concentration. Assemblage composition in all three sub‐lakes underwent strongest shifts between December and April, the period when water levels were lowest and fishing has the greatest impact on fish stocks. Future impacts that change the hydrology of the middle Yangtze would alter the dynamics of habitat connectivity and affect environmental conditions and fish assemblages of the Poyang Lake wetland system.     

How deforestation drives stream habitat changes and the functional structure of fish assemblages in different tropical regions

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Larval and early juvenile fish dynamics in main channel and backwater lake habitats of the Illinois River ecosystem

The spatial and temporal complexity of large river ecosystems likely promotes biological diversity within riverine larval fish assemblages. However, the focus of most previous riverine studies of larval fish distribution has tended to concentrate mainly on backwater habitats. There has been less focus on the value of the main channel for larval fishes. We sampled two habitats types (three main channel sites and three backwater lakes) along 20 km of the Illinois River ecosystem during 2 years to compare the larval fish distribution along both spatial and environmental gradients between these habitats. Across the 2 years of this study, we found similar trends in the spatial and temporal distribution of larval fish, although there were some differences in densities between years. The relative abundance and size of many of the different fish taxa varied among habitats. Centrarchids, clupeids, poeciliids, cyprinids (excluding common carp) and atherinids were more abundant within backwater lake habitat. In contrast, common carp (Cyprinus carpio), sciaenids, moronids and catostomids were more abundant in main channel habitats. Furthermore, sciaenid and clupeid larvae captured in the backwater lake habitat were larger as the season progressed than those captured in the main channel. Our study suggests that larval fish show habitat specialisation, similar to adults, indicating that both the backwater lakes and the main channel are both important for larval fish and preserving the diversity of the fish assemblages in large floodplain rivers.     

鄱阳湖物理生境特征及其对鱼类群落结构的影响

湖泊鱼类群落结构与物理生境特征密切相关。为了探究鱼类群落结构与物理生境特征之间的关系,在鄱阳湖设立17个采样点,通过采集鱼类样本研究其群落结构,并利用遥感技术分析样点物理生境特征（包括岸线分形维数、距离指数和高程值）及其空间区域差异。结果表明,依据17个采样位点的物理生境特征,鄱阳湖丰水期物理生境空间上可以划分为3个区域,分别为北方区、南方区和主湖区,但枯水期鄱阳湖生境没有显著的区域划分规律。丰水期鄱阳湖鱼类可以分为北方群、南方群和主湖区群3个类群,而枯水期鱼类组成没有明显规律。从功能类群上看,鄱阳湖鱼类以杂食性、湖泊定居性和偏好于底层以及中下层栖息的中小型鱼类为主。不同区域的鱼类功能群之间存在时间和空间上的变化,北方区和南方区鱼类功能群组成相似,主湖区与北方区和南方区存在差异。总体上,鱼类群落结构的时空变化和差异与物理生境特征具有良好的一致性;未来鄱阳湖鱼类的保护工作需要关注湖泊物理生境特征,不同区域应制定不同的保护措施。     

Assessing long‐term fish responses and short‐term solutions to flow regulation in a dryland river basin

Water resource development and non‐native species have been cited as primary drivers associated with the decline of native fishes in dryland rivers. To explore this topic, long‐term trends in the fish community composition of the Bill Williams River basin were studied over a 30‐year period (Arizona, USA). We sampled 31 sites throughout the basin that were included in fish surveys by Arizona Game and Fish in 1994–97 and the Bureau of Land Management in 1979–80. We found that non‐native species have proliferated throughout the entire basin, with greater densities in the lower elevations. Native species have persisted throughout most of the major river segments, but have experienced significant declines in frequency of occurrence and abundance in areas also containing high abundances of non‐native species. Next, we assessed the short‐term response of the fish assemblage to an experimental flood event from the system's only dam (i.e. Alamo Dam). In response to the flood, we observed a short‐term reduction in the abundance of non‐native species in sites close to the dam, but the fish assemblage returned to its preflood composition within 8 days of the event, with the exception of small‐bodied fish, which sustained lower postflood densities. Our findings demonstrate the importance of natural flow regime on the balance of native and non‐native species at the basin scale within dryland rivers and highlight minimal effects on non‐native fishes in response to short duration flood releases below dams.