Genetic diversity among varieties of Chia (Salvia hispanica L.)

Chia, Salvia hispanica L., was a staple crop in pre-Columbian Mesoamerica. Despite the great potential of the species as an oilseed crop, little research related to domesticated and wild varieties exists. A study was undertaken to assess genetic diversity among 38 wild and domesticated accessions of S. hispanica collected throughout Mesoamerica by using RAPD markers. Genetic diversity was higher among wild varieties (H _G= 0.15) than all domesticated varieties (H _G= 0.10) and modern commercial domesticated varieties (H _G= 0.02), suggesting a slight loss of diversity accompanying domestication and a near lack of diversity in modern commercial varieties. In addition, the preliminary results indicate that the center of genetic diversity is in the highlands of western Mexico.     

Fodder production and soil health with conjunctive use of saline and good quality water in ustipsamments of a semi‐arid region

Food and fodder shortage in arid and semi‐arid regions force farmers to use marginal quality water for meeting the water requirement of crops which result in low quality, reduced production and an adverse impact on soil properties. A field study on loamy‐sand (Hyperthermic Typic Ustipsamments) saline soil was conducted during 1999–2001 at Central Institute for Research on Buffaloes, Hisar. This involved assessment of effects of conjunctive use of saline water, EC = 4·6–7·4 dSm⁻¹, SAR = 14–22 ((mmol⁻¹)^½ with good quality water on five fodder crop rotations: oat‐sorghum (Avena sativa‐–Sorghum bicolor), rye grass–sorghum (Loleum rigidum—Sorghum bicolor), Egyptian clover—sorghum (Trifoleum alexandrinum—Sorghum bicolor), Persian clover—sorghum (Trifoleum resupinatum—Sorghum bicolor) and Indian clover–sorghum (Melilotus indica—Sorghum bicolor) and certain soil properties associated with it. Leguminous winter fodder crops were more sensitive to poor quality water use. Reductions in fodder yield with use of saline water alone throughout season were 85, 68, 54, 42, 36 and 26 per cent in Indian clover, Egyptian clover, Persian clover, oat, rye grass and sorghum respectively as compared to good quality water. Leguminous fodder crops produced protein rich (12–14 per cent) and low fibre (18–20 per cent) fodder as compared to poor quality grassy fodder under good quality water irrigation but their quality deteriorated when saline water was used. These leguminous crops accumulated proportionately higher Na⁺ (1·58 per cent) resulting in adverse impact on their growth as compared to grassy fodder crops. Higher soil salinity (12·2 dSm⁻¹), SAR = 20 (mmol⁻¹)^½ was recorded with saline water irrigation; and slight adverse impact was noticed on infiltration rate and contents of water dispersible clay. Alternate cyclic use of canal and saline water could be an option for fodder production under such conditions. Copyright © 2006 John Wiley & Sons, Ltd.     

Estimation of Variability of Five Enzyme Systems Among Wild and Cultivated Species of <Emphasis Type="Italic">Trifolium</Emphasis>

The genus Trifolium comprises of 290 annual and perennial species of which the species such as T. repens, T. hybridum, T. pratense, T. ambiguum, T. resupinatum, T. alexandrinum are economically important. Boundaries between species in many cases have been difficult to define because of wide range of diversity caused by primary polymorphism. Hence, inter- and intraspecies variation in Trifolium, for zymogram pattern of five enzyme system was made to work out estimate of variability for isozymic banding pattern and get an insight into the species relationship. A total of 25 species represented by 134 accessions were compared for 5 enzymes viz. peroxidase, esterase, superoxide dismutase, acid phosphatase, and glutamate oxalo acetate transaminase using starch gel electrophoresis. Forty-six types of zymograms for Est isozyme pattern were observed amounting to 4.38 estimate of variability. The estimates of variability revealed maximum variation in T. resupinatum (4.24) followed with 3.02 in T. nigrescens. Estimate of variability for superoxide dismutase ranged from 0.46 to 2.67 among species amounting to 1.08 total variability across species. A total of 28 types of glutamate oxalo acetate transaminase zymograms were observed accounting for 2.48 estimate of variability. All but one band attributed to an estimate of variability of 1.43 in the genus for ACP and 16 different types of ACP zymograms were noticed. Highest variation for ACP was observed in T. resupinatum (4.53). Estimate of variation for peroxidase was 4.83 and 51 types of zymogram were observed. The species differed markedly for zymograms. The species distributed both in temperate and tropical parts like T. resupinatum had more variability as compared to cultivated species like T. alexandrinum and T. pratense. The rich variability present among these species can provide good source of gene transfer from wild to cultivated species which otherwise have no specific zymogram and exhibit low variability. The species sharing zymogram pattern for one or more enzymes with cultivated species were considered to have affinity and can further be utilized in attempting interspecific hybridization.     

How many tough-rachis mutants gave rise to domesticated barley?

It is commonly agreed that cultivation of wild barley preceded the selection of the domesticated, non-brittle spike type. However, how common was wild barley cultivation before domestication and how many domesticated mutants gave rise to the barley crop could not be inferred from botanical and archaeological evidence. Some clues, nevertheless, can be obtained from the pattern of allozyme diversity in wild and cultivated barley obtained by Kahler and Allard (1981). Parallel variation, in terms of number of alleles per locus and frequency of the various alleles, was found in wild and domesticated barley. This similarity has been taken as an indication of multiple domestications and the frequency of the rarest alleles has been used to estimate that about 100 tough-rachis different mutants were necessary for the inclusion of the allozyme diversity of the wild barley in the domesticated crop. Assuming mutation rate of 10^–6 in the locus governing tough rachis, the plant population required to generate these 100 mutants in one year would extend over about 200 hectares, or 10 hectares if the 100 mutants have been formed over a period of 20 years. The simplified calculations suggest that prior to domestication cultivation of wild barley was not a common practice.     

Monophyletic vs. polyphyletic origin of the crops on which agriculture was founded in the Near East

The following comparisons between crops and their closely related wild relatives provide clues for discriminating between monophyletic and polyphyletic origins under domestication: (i) Presence or absence of patterns indicative of founder effects in the cultivated genepool, compared to the amount of variation present in its wild progenitor. (ii) Uniformity or lack of uniformity (within a crop) in genes governing principal domestication traits (traits that were automatically selected for once the wild progenitor was introduced into cultivation). (iii) Species diversity: The number of closely related (congeneric) wild species with similar potential for domestication, native to the area under consideration; and how many of them entered cultivation. The present paper evaluates the information available on the eight crops that founded Neolithic agriculture in the Near East; and arrives at the conclusion that emmer wheat Triticum turgidum L. subsp. dicoccum Schúbler, einkorn wheat T. monococcum L., pea Pisum sativum L., and lentil Lens culinaris Medik. were very likely taken into cultivation only once or – at most – a very few times. Also chickpea Cicer arietinum L., bitter vetch Vicia ervilia (L.) Willd., and flax Linum usitatissimum L. seem to have been domesticated in a similar way, but the evidence concerning them is much scarcer. Only for barley Hordeum vulgare L. are there indications that it has been domesticated more than once – but again only a very few times.     

Genetic diversity in cowpea [Vigna unguiculata (L.) Walp.] as revealed by RAPD markers

The present study, using RAPD analysis, was undertaken to characterize genetic variation in domesticated cowpea and its wild progenitor, as well as their relationships. The materials used consisted of 26 domesticated accessions, including accessions from each of the five cultivar-group, and 30 wild/weedy accessions, including accessions from West, East and southern Africa. A total of 28 primers generated 202 RAPD bands. One hundred and eight bands were polymorphic among the domesticated compared to 181 among wild/weedy cowpea accessions. Wild accessions were more diverse in East Africa, which is the likely area of origin of V. unguiculata var. spontanea. Var. spontanea is supposed to have spread westward and southward, with a loss of variability, loss counterbalanceed in southern Africa by introgressions with local perennial subspecies. Although the variabilty of domesticated cowpea was the highest ever recorded, cultivar-groups were poorly resolved, and several results obtained with isozyme data were not confirmed here. However primitive cultivars were more diverse than evolved cultivars, which still suggests two consecutive bottlenecks within domesticated cowpea evolution. As isozymes and AFLP markers, although with a larger number of markers, RAPD data confirmed the single domestication hypothesis, the gap between wild and domesticated cowpea, and the widespread introgression phenomena between wild and domesticated cowpea.     

Geographic distribution and domestication of wild emmer wheat (<Emphasis Type="Italic">Triticum dicoccoides</Emphasis>)

The transition from hunting and gathering to agriculture had revolutionary consequences for the development of human societies. Crops such as wheat, barley, lentil, pea and chickpea played a crucial role in the establishment of complex civilizations in south west Asia. Wild emmer wheat (Triticum dicoccoides) was one of the first cereals to be domesticated in the Fertile Crescent between c. 12,000 and c. 10,000 years ago. This step provided the key for subsequent bread wheat evolution. Wild emmer is found today in the western Fertile Crescent in Jordan, Syria and Israel, the central part of southeastern Turkey and mountain areas in eastern Iraq and western Iran. In this review, we summarize issues concerning geography and domestication of wild emmer wheat based on published molecular and archaeobotanical data and on our recent findings. We suggest that modern domestic tetraploid wheats derived from wild emmer lines from southeast Turkey. However, our understanding of emmer domestication is not complete. The “dispersed-specific” domestication model proposed for einkorn might well be appropriate also for emmer.     

Foliar response of wild and domesticated Phaseolus vulgaris L. to water stress

It is surmised that domestication has reduced geneticvariability in the common bean (Phaseolusvulgaris L.). However, little is known about leaf anatomy responses to water stress in wild or domesticated forms ofP. vulgaris. In this study,anatomical variation was evaluated in watered and water stressed plants of wild and domesticated genotypes of P.vulgaris from Mexico, growing under greenhouse conditions. Five terminal leaflets of completely expanded leaves wereused to evaluate leaf area (LA) and theirmiddle-regions to evaluate leaf thickness (LT), and various anatomical features. Domesticated genotypes showed bigger LAthan that of the wild ones; there was an effect due to the origin of materials, LA being bigger in genotypes from warm and humid lands that those from dry and temperate ones. No differences were detected in LT among materials; however, in domesticated plants the palisadeparenchyma predominated over the spongy one, contrasting with thewild genotypes. Under drought conditions, stomatal abortion was observed in wild and domesticated genotypes, especially on theabaxial surface. We conclude that, in fact, there are contrasting differences in leaf anatomy among wild and domesticated forms of Mexican Phaseolus vulgaris. Results suggest that domestication not only favours the enlargement of the LA, but also an increase in palisade parenchyma, suggesting a divergence toward assimilation in domesticated forms, in contrast with a better internal gas diffusion in wild forms. Domestication seems to have accentuated stomatal abortion as means of a transpirational control mechanism to counteract the effects of drought.     

Phosphatase activity in the rhizosphere and its relation to the depletion of soil organic phosphorus

Summary The distribution of phosphatase activity and of phosphate fractions of the soil in the proximity of roots was studied in order to evaluate the significance of phosphatases in P nutrition of various plants (Brassica oleracea, Allium cepa, Triticum aestivum, Trifolium alexandrinum). A considerable increase in both acid and alkaline phosphatase activity in all the four soil-root interfaces was observed. Maximum distances from the root surface at which activity increases were observed ranged from 2.0 mm to 3.1 mm for acid phosphatase and from 1.2 mm to 1.6 mm for alkaline phosphatase. The increase in phosphatase activity depended upon plant age, plant species and soil type. A significant correlation was noticed between the depletion of organic P and phosphatase activity in the rhizosphere soil of wheat (r = 0.99^**) and clover (r = 0.97^**). The maximum organic P depletion was 65% in clover and 86% in wheat, which was observed within a distance from the root of 0.8 mm in clover and 1.5 mm in wheat. Both the phosphatases in combination appear to be responsible for the depletion of organic P.     

Investigating the origin of hazelnut (<Emphasis Type="Italic">Corylus avellana</Emphasis> L.) cultivars using chloroplast microsatellites

The place and time of European hazel (Corylus avellana L.) domestication is not clear, although it was already cultivated by the Romans. In this study, 75 accessions from Spain, Italy, Turkey, and Iran were analysed using 13 chloroplast microsatellite to investigate the origin and diffusion of hazelnut cultivars. Four loci were polymorphic and identified a total of four different chlorotypes. Their distribution was not uniform in each geographical group. The most frequent chlorotype A was present in all groups. An increase in chlorotype number and diversity from Spain eastward to Italy, Turkey, and Iran was observed. Results suggest that some spread of cultivars occurred from East to West and that hazelnut cultivation was not introduced from the eastern Mediterranean basin into Spain and southern Italy by Greeks or Arabs. Moreover, the results suggest considerable exchange of germplasm between Italy and Spain, probably by the Romans. Hazelnut appears to have been domesticated independently in three areas: the Mediterranean, Turkey, and Iran.     

Potential of landrace germplasm for genetic enhancement of white lupin in Egypt

Landraces of white lupin (Lupinus albus L.) collected in Egypt were evaluated along with locally developed cultivars and selected foreign germplasm for yield and major morphological characteristics in five different locations. These locations represent different soil types and climatic conditions in Egypt. The results showed an outstanding performance of the local cultivar checks across traditional locations for lupin cultivation, which supports the utilization of local germplasm for further improvement of locally adapted lupins in Egypt. The results further suggest that local landrace germplasm may be an important source of alleles for shortening the vegetative period, reducing plant height and stem length, as well as for improving some yield components as number of pods and seeds per plant. The genotype-by-location interaction was significant for all characteristics. Mass selection in the Egyptian germplasm collection of white lupin has the potential for enhancing yield, especially in germplasm adapted to newly reclaimed desert locations.     

Different leguminous pre-crops increased yield of succeeding cereals in two consecutive years

Leguminous pre-crops are an important source of green manure in organic crop rotations for improving soil fertility and achieving high yields of cereals. We aimed to study the potential of various leguminous species, other than the traditionally cultivated red clover (Trifolium pratense L.), as green manure pre-crops for subsequent cereals. The use of different legume species enables to exploit advantages of specific legumes in organic cereal production. In order to test the legumes as pre-crops for cereals, we carried out trials located in the temperate climate zone of northeast Europe (58°44′59.41″ N, 26°24′54.02″ E). We sowed the following perennial legumes as pre-crops: red clover, alsike clover (Trifolium hybridum L.) and Washington lupine (Lupinus polyphyllus Lindl.), biennial white sweet clover (Melilotus albus Medik.) and annual Alexandria clover (Trifolium alexandrinum L.), and crimson clover (Trifolium incarnatum L.). Timothy (Phleum pratense L.) was used as a control. The leguminous pre-crops were followed by three spring cereals (barley, oat and spring wheat) and two winter cereals (rye and winter wheat). We tested the first-year after-effect (all cereals) and second-year after-effect (only barley and oat) of pre-crops on the grain yield of cereals. Perennial and biennial legume species produced the highest dry matter yield and contained the highest amount of nutrients, especially nitrogen, compared to annual species. All subsequent cereals produced significant extra yields after each leguminous pre-crop in the following two years, although the effect was smaller in the second year. The most suitable pre-crops for spring cereals were red and alsike clover followed by lupine, whereas the best pre-crops for winter cereals were sweet clover and annual clovers. Our results show the potential of various leguminous pre-crop species as valuable sources of green manure in organic crop rotation.     

Yam (Dioscorea ssp.) domestication by the Nago and Fon ethnic groups in Benin

Guinea yams (Dioscorea cayenensis-rotundata complex; D. rotundata Poir. and D. cayenensis Lam.) have been described as resulting from a process of domestication of wild yams of the section Enantiophyllum by African farmers. Although currently practised by few farmers, the process of yam domestication is still on-going in Benin. In order to document the practices used and the indigenous knowledge maintained by Nago and Fon farmers, 27 villages were surveyed. In total, 57 farmers domesticating yam were identified, and 68 yams newly domesticated (or in domestication) were collected. Fon and Nago farmers domesticate yam mainly to widen the genetic basis of the existing diversity or for simple curiosity. Among the three wild yams species (D. abyssinica Hochst. ex Kunth, D. praehensilis Benth. and D. burkilliana J. Miège) used, D. praehensilis is the most important and the most exploited. Tuber of the wild yams are collected either in the bush (most often near the village) or in the forests (far from the village) during hunting. The domestication process consists of bringing into cultivation selected individuals which go through intense vegetative multiplication and selection procedures (over a lengthy but variable period of time) that induce morphological and biochemical changes in the plant mainly at the tuber level. Individuals resulting from these manipulations were found to be, either similar or identical to known landraces or completely new based on both morphological and isozyme analysis. Because it leads to some new cultivars, this process of domestication has potential in yam breeding and appears to be a strategy that could be useful to breeders, while developing a methodology for participatory breeding of yam.     

Genetic Structure of Wild and Domesticated Populations of Capsicum annuum (Solanaceae) from Northwestern Mexico Analyzed by RAPDs

Levels of genetic variation and genetic structure of 15 wild populations and three domesticated populations of Capsicum annuum were studied by RAPD markers. A total of 166 bands (all of them polymorphic) and 126 bands (125 of them polymorphic) were amplified in wild and domesticated populations, respectively. Mean percentage of polymorphism was 34.2% in wild populations and 34.7% in domesticated populations. Mean and total genetic diversity were 0.069 and 0.165 for wild populations and 0.081 and 0.131 for domesticated populations. Parameters of genetic diversity estimated from 54 bands with frequencies ≥1 − (3/n) (n = sample size) showed that 56.7% of the total variation was within and 43.3% among wild populations, whereas 67.8% of the variation was within and 32.2% among domesticated populations. AMOVA indicated that total genetic diversity was equally distributed within (48.9 and 50.0%) and among (50.0 and 51.1%) populations in both wild and domesticated samples. Wild and domesticated populations were clearly resolved in a UPGMA dendrogram constructed from Jaccard’s distances (average GD = 0.197), as well as by AMOVA (17.2% of variance among populations types, p = 0.001) and by multidimensional scaling analysis. Such differentiation can be associated with domestication as well as different origin of gene pools of the wild (Northwestern Mexico) and cultivated (more probably Central Mexico) samples analyzed. The considerable genetic distances among cultivars (average GD = 0.254) as well as the high number of diagnostic bands per cultivar (33 out of 126 bands), suggest that genetic changes associated with domestication could have resulted from artificial selection intervening in different directions, but the inclusion of more domesticated samples might clarify the nature of distinctions detected here.     

Origin of rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.) domestication genes

A number of genes that contribute to the domestication traits of cultivated rice have been identified. These include Sh4, Rc, PROG1 and LABA1, which are associated with non-shattering rachis, white pericarp, erect growth and barbless awns, respectively. The mutations giving rise to the “domestication alleles” of these genes are either invariable in cultivated rice, or have variability that is strictly associated with the phenotypic trait. This observation forms the basis to those current rice domestication models that envisage a single origin for the domesticated phenotype. Such models assume that the domestication alleles are absent or rare in wild rice, emerged under cultivation and spread across all rice groups by introgressive hybridization. We examined whole-genome sequencing datasets for wild and cultivated rice to test the former two assumptions. We found that the rc and laba1 alleles occur in wild rice with broad geographical distribution, and reach frequencies as high as 13 and 15%, respectively. These results are in agreement with previous observations of the prog1 and sh4 domestication alleles in wild populations. We also show that the diversity of the genomic regions surrounding the rc, laba1, prog1 and sh4 alleles in wild accessions is greater than that in cultivated rice, suggesting that these alleles emerged prior to domestication. Our findings indicate that the possibility that independent rice groups obtained identical domestication alleles directly from the wild population needs to be considered.     

Primitive weedy forms of guar,adak guar: possible missing link in the domestication of guar [<Emphasis Type="Italic">Cyamopsis tetragonoloba</Emphasis> (L.) Taub.]

Crop domestication has lead to the selection of a wide range of traits that distinguish domesticated crops from their wild ancestors. Over the past four decades, concerted efforts by archaeologists and geneticists have provided novel insights into the domestication of crops. However, minor crops are rarely a subject for intensive domestication studies and very less is known on the domestication of guar [Cyamopsis tetragonoloba (L.) Taub.] except the trans-domestication hypothesis. The hypothesis proposes that the domestication of guar took place in recent times in the dry areas of the northwestern region of Indo-Pakistan subcontinent and the African wild species, C. senegalensis Guill. et Perr., as its ancestor. However, the process by which the wild species was domesticated is not fully understood. The present paper describes the exploration, collection and in situ characterization of the primitive weedy forms of guar that could be the missing link between the wild and cultivated species. Adak guar is found to grow along with cultivated guar as a weed and is characterized by several primitive characters, prominent among which are spreading habit, small inedible pods which shatter at maturity, hard seed coat and seed dormancy. A total of 66 germplasm collections of these primitive weedy forms of guar have been made from naturally occurring populations in the arid regions of northwestern India. Systematic studies involving these primitive weedy forms can help in understanding the domestication bottlenecks and in utilizing the genetic variation lost during the process of domestication for the improvement of cultivated guar.     

Genetic diversity of Syrian pistachio (<Emphasis Type="Italic">Pistacia vera</Emphasis> L.) varieties evaluated by AFLP markers

Pistachio (Pistacia vera L.) is a strategic nut tree species in the Middle East which holds comparative advantage over other fruit trees in view of its hardiness, income generation opportunities and benefits for the ecosystem. Yet pistachio cultivation depends on a very narrow genetic base, in spite of the existence of many varieties still marginally exploited. Syria is an important center of diversity for pistachio. A country wide ecogeographic survey in this country was carried out to determine the extent of pistachio genetic diversity and its use. As a whole, 114 accessions were collected from 37 farms to assess diversity at morphological and molecular level. Molecular evaluation was carried out using Amplified Fragment Length Polymorphism (AFLP) technique and performed using seven primer pair combinations. Results from the studies allowed the identification of 25 pistachio female varieties in Syria, some of which unique and described for the first time. Three groups of pistachio diversity were identified by cluster analysis which provides useful information about the distribution of genetic diversity in Syria for enhanced use and sustainable conservation.     

Genetic diversity and population structure of Capsicum baccatum genetic resources

Capsicum baccatum is one of five domesticated pepper species which, despite its morphological and ecological variability, has been underexploited for germplasm improvement. Utilizing a broad spectrum of domesticated and wild C. baccatum germplasm, we utilize AFLP markers to describe the species’ molecular diversity and population structure in the South American gene pool. Analysis of molecular variance (AMOVA) revealed greater genetic diversity in the wild form of C. baccatum (C. baccatum var. baccatum) than in the domesticated form of the species (C. baccatum var. pendulum). Both Bayesian and distance based clustering analysis, as well as principal coordinates analysis (PCA), concordantly demonstrated admixture/shared ancestry between wild and cultivated C. baccatum botanical varieties. Two principal genetic groups were identified in the domesticated C. baccatum accessions largely based on their geographic distribution in South America. One group was predominated by accessions from the western territories of the species’ distribution (Peru, Colombia, Ecuador, Bolivia, Chile and northwestern Argentina) and the second by accessions from the eastern regions, Paraguay and eastern Argentina). The two genetic groups overlapped in the geographic location of present-day Bolivia. The grouping pattern suggested that C. baccatum was domesticated in multiple sites and that its evolution took two lineages followed by lineage differentiation. The wild accessions most closely related to the cultigens were found in the highlands of Peru and Bolivia, which support the early hypothesis that this region is one of the domestication sites of this species. A Bayesian assignment analysis demonstrated that Brazilian wild forms of C. baccatum were genetically distant to all other accessions and made little to no contribution to the domesticated genepool. Moreover, results of clustering analysis suggested that C. baccatum likely originated from present day Paraguay. Analysis of inter-specific relationships across selected Capsicum species supported independent lineages for the two crossability groups within Capsicum, the baccatum species-complex (including C. baccatum) and the annuum species-complex (including C. annuum, C. chinense and C. frutescens). However, the results did not support taxonomic distinction of C. baccatum var. umbilicatum from C. baccatum var. pendulum. The present study provides new insights into the domestication of C. baccatum. The results will be useful for identifying accessions for crop improvement and guiding the development of in situ and ex situ conservation programs.     

Alterations in Soil Chemical Properties Induced by Continuous Rice Cultivation: A Study on the Arid Nile Delta Soils of Egypt

Changes in soil chemical properties resulting from continuous rice (Oryza sativa) cultivation on the Nile Delta soils of Egypt were examined. The eight soil profiles characterized for this study were designated as 0 (crop rotation without rice), 1 (crop rotation with rice after every 2 years), and 2, 3, 4, 5, 6, and 7 representing continuous rice cultivation for 2, 4, 8, 12, 15, and 20 years, respectively. Sampling was conducted at 0–20, 20–40, 40–60, and 60–80 cm depths for each profile and samples analyzed for a suite of chemical properties. Soil pH, salinity indicators [electrical conductivity (EC), and exchangeable sodium percentage (ESP)], as well as soluble and exchangeable cations and anions such as chloride and sulfate, all tended to decrease with years of continuous rice cultivation, with a number of significant (p < 0·05) differences observed. Cation exchange capacity (CEC) increased with years of continuous rice cultivation, with a 12% increase observed between 2‐ and 20‐year continuous rice cultivation systems. Principal component analysis conducted on soil properties within the continuous rice cultivation systems (profiles 2–7) revealed two possible components, namely F1 (pH, EC, ESP, and soluble Na⁺, Mg²⁺, K⁺, Cl⁻, and SO₄⁻²) and F2 (clay, organic matter, and CEC), which could be broadly associated to soil salinity and soil fertility, respectively. Findings suggested possible alterations in soil chemical properties by continuous rice cultivation practices on these Nile Delta soils of Egypt, Africa. Copyright © 2015 John Wiley & Sons, Ltd.     

Genetic identity and relationships of Iranian apple (Malus?×?domestica Borkh.) cultivars and landraces, wild Malus species and representative old apple cultivars based on simple sequence repeat (SSR) marker analysis

In order to shed light on the role of Iran in apple evolution and domestication, we chose to investigate the relationships of a collection of 159 accessions of wild and domesticated apples including Iranian indigenous apple cultivars and landraces, selected wild species, and old apple scion and rootstock cultivars from different parts of the world. The majority of the wild species belonged to M. sieversii, which is widely believed to be the main maternal wild ancestor of domestic apples, from Kazakhstan and M. orientalis, which is one of the probable minor ancestors of domestic apples, from Turkey and Russia located on the east and west of Iran, respectively. The accessions were assigned into six arbitrary populations for the purpose of generating information on genetic parameters. Nine simple sequence repeat (SSR) loci selected from previous studies in apple were screened over DNA extracted from all the accessions. Results showed that all SSR loci displayed a very high degree of polymorphism with 11–25 alleles per locus. In total, there were 153 alleles across all loci with an average of 17 alleles per locus. The SSR allelic data were then used for estimation of population genetic parameters, including genetic variation statistics, F-statistics, gene flow, genetic identity, genetic distance and then cluster analysis using POPGENE 1.32 software. The F-statistics and gene flow in particular, showed that there was more intra-population than between population variation. The genetic identity and genetic distance estimates, and the dendrogram generated from the un-weighted pair group arithmetic average (UPGMA) method of cluster analysis showed that the Iranian cultivars and landraces were more closely related to M. sieversii from Central Asia (east of Iran) and M. orientalis native to Turkey and Russia than to other accessions of Malus species. Also, the old apple cultivars from different parts of the world have a closer genetic relationship to M. sieversii, M. orientalis and the Iranian apples, than to other wild species. Based on these results, we suggest that the Iranian apples may occupy an intermediate position between the domesticated varieties and wild species. We propose that Iran could be one of the major players in apples’ domestication and transfer from Central Asia to the western countries.