Homing behaviour of juvenile coho salmon (Oncorhynchus kisutch) within an off-channel habitat

Abstract – Although homing behaviour has been observed in juvenile Atlantic salmon, brown trout and resident cutthroat trout, this behaviour has not been well studied in juvenile Pacific salmon. We examined the site fidelity and homing behaviour of juvenile coho salmon ( Oncorhynchus kisutch ) by marking and relocating them within an off-channel habitat. Over 80% of displaced fish returned to the area from which they were originally collected. The proportion of fish that returned to the original location did not vary significantly among three sampling dates. However, we found that this proportion decreased over time in a brackish lagoon when we statistically analysed the data reported by Day (1966) . Our results suggest that juvenile coho salmon exhibit strong site fidelity and are able to return to their home ranges after displacement. These behaviours are likely to be important for the winter survival of juvenile coho salmon.     

Ocean distribution and habitat associations of yearling coho (Oncorhynchus kisutch) and Chinook (O. tshawytscha) salmon in the northern California Current

Yearling juvenile coho and Chinook salmon were sampled on 28 cruises in June and September 1981–85 and 1998–07 in continental shelf and oceanic waters off the Pacific Northwest. Oceanographic variables measured included temperature, salinity, water depth, and chlorophyll concentration (all cruises) and copepod biomass during the cruises from 1998–07. Juvenile salmonids were found almost exclusively in continental shelf waters, and showed a patchy distribution: half were collected in ～5% of the collections and none were collected in ～40% of the collections. Variance‐to‐mean ratios of the catches were high, also indicating patchy spatial distributions for both species. The salmon were most abundant in the vicinity of the Columbia River and the Washington coast in June; by September, both were less abundant, although still found mainly off Washington. In June, the geographic center‐of‐mass of the distribution for each species was located off Grays Harbor, WA, near the northern end of our sampling grid, but in September, it shifted southward and inshore. Coho salmon ranged further offshore than Chinook salmon: in June, the average median depth where they were caught was 85.6 and 55.0 m, respectively, and in September it was 65.5 and 43.7 m, respectively. Abundances of both species were significantly correlated with water depth (negatively), chlorophyll (positively) and copepod biomass (positively). Abundances of yearling Chinook salmon, but not of yearling coho salmon, were correlated with temperature (negatively). We discuss the potential role of coastal upwelling, submarine canyons and krill in determining the spatial distributions of the salmon.     

Marine environment‐based forecasting of coho salmon (Oncorhynchus kisutch) adult recruitment

Generalized additive models (GAMs) were used to investigate the relationships between annual recruitment of natural coho salmon (Oncorhynchus kisutch) from Oregon coastal rivers and indices of the physical ocean environment. Nine indices were examined, ranging from large‐scale ocean indicators, e.g., Pacific Decadal Oscillation (PDO), to indicators of the local ecosystem (e.g., coastal water temperature near Charleston, OR). Generalized additive models with two and three predictor variables were evaluated using a set of performance metrics aimed at quantifying model skill in short‐term (approximately 1 yr) forecasting. High explanatory power and promising forecast skill resulted when the spring/summer PDO averaged over the 4 yr prior to the return year was used to explain a low‐frequency (multi‐year) pattern in recruitment and one or two additional variables accounted for year‐to‐year deviations from the low‐frequency pattern. More variance was explained when averaging the predictions from a set of models (i.e., taking the ensemble mean) than by any single model. Making multiple forecasts from a set of models also provided a range of possible outcomes that reflected, to some degree, the uncertainty in our understanding of how salmon productivity is driven by physical ocean conditions.     

Detection efficiency and habitat use to inform inventory and monitoring efforts: juvenile coho salmon in the Knik River basin,Alaska

Imperfect detection associated with sampling gear presents challenges for wildlife inventory and monitoring efforts. We examined occupancy dynamics and habitat use of juvenile coho salmon, Oncorhynchus kisutch, in shallow lake environments over a summer and early fall season in the Knik River area of south central Alaska using models which control for and estimate sampling gear detection efficiency. In addition, we present statements for the probability that observed absences at a survey site or from a survey area (a collection of sites) are true absences given some amount of sampling effort and analysts' beliefs about site occupancy and sampling gear detection efficiency which can be used to guide inventory and monitoring efforts for juvenile salmon or other wildlife and plant species. Occupancy modelling results demonstrate that minnow traps were effective at sampling juvenile coho in shallow lake environments, with a mean probability of detection across the study period of 0.68 (i.e., probability of detecting the presence of juvenile coho given that they are present at a trap site; SE = 0.03). Juvenile coho salmon migrated into shallow water lakes in late summer and early fall, presumably to seek out overwinter habitat. N‐mixture modelling examination of habitat use demonstrated that once in shallow lake environments, juvenile coho were widely distributed across a range of microhabitats, with some evidence for preference for shallower depths and warmer water temperatures.     

Nomads no more: early juvenile coho salmon migrants contribute to the adult return

The downstream movement of coho salmon fry and parr in the fall, as distinct from the spring migration of smolts, has been well documented across the range of the species. In many cases, these fish overwinter in freshwater, but they sometimes enter marine waters. It has long been assumed that these latter fish did not survive to return as adults and were ‘surplus’ to the stream's carrying capacity. From 2004 to 2010, we passive integrated transponder tagged 25,981 juvenile coho salmon in three streams in Washington State to determine their movement, survival and the contribution of various juvenile life histories to the adult escapement. We detected 86 returning adults, of which 32 originated from fall/winter migrants. Half of these fall/winter migrants spent ~1 year in the marine environment, while the other half spent ~2 years. In addition, the median return date for fall/winter migrants was 16 days later than spring migrants. Our results indicated that traditional methods of spring‐only smolt enumeration may underestimate juvenile survival and total smolt production, and also overestimate spring smolt‐to‐adult return (SAR). These are important considerations for coho salmon life cycle models that assume juvenile coho salmon have a fixed life history or use traditional parr‐to‐smolt and SAR rates.     

银鲑(oncorhynchus kisutch)形态性状测量

通过对银鲑的形性状测量 ,初步进行了银鲑的种质研究。结果表明银鲑的形态性状如下 :全长 /体长为 1 1 2± 0 0 2 ,头长 /眼径为 4 46± 0 45 ,体长 /体高为 4 49± 0 32 ,尾柄长 /尾柄高为 2 2 9± 0 30 ,体长 /头长为 4 0 4± 0 2 1 ,体长 /叉长为 0 94± 0 0 3 ,头长/头高为 1 2 8± 0 0 8,体长 /尾柄长为 5 2 3± 0 30 ,头长 /吻长为 3 33± 0 2 7,头长 /眼间距为 2 68± 0 2 0 ,背鳍 1 0～ 1 3 ,腹鳍 1 0～ 1 1 ,胸鳍 1 3～ 1 6 ,臀鳍 1 2～ 1 7,侧线鳞 1 2 1～1 4 4 ,幽门盲囊 45～ 83 ,鳃耙 1 9～ 2 3,脊椎骨 58～ 66。     

A model‐based meso‐zooplankton production index and its relation to the ocean survival of juvenile coho (Oncorhynchus kisutch)

The ocean survival of coho salmon (Oncorhynchus kisutch) off the Pacific Northwest coast has been related to oceanographic conditions regulating lower trophic level production during their first year at sea. Coastal upwelling is recognized as the primary driver of seasonal plankton production but as a single index upwelling intensity has been an inconsistent predictor of coho salmon survival. Our goal was to develop a model of upwelling‐driven meso‐zooplankton production for the Oregon shelf ecosystem that was more immediately linked to the feeding conditions experienced by juvenile salmon than a purely physical index. The model consisted of a medium‐complexity plankton model linked to a simple one‐dimensional, cross‐shelf upwelling model. The plankton model described the dynamics of nitrate, ammonium, small and large phytoplankton, meso‐zooplankton (copepods), and detritus. The model was run from 1996 to 2007 and evaluated on an interannual scale against time‐series observations of copepod biomass. The model’s ability to capture observed interannual variability improved substantially when the copepod community size distribution was taken into account each season. The meso‐zooplankton production index was significantly correlated with the ocean survival of hatchery coho salmon from the Oregon production area, although the coastal upwelling index that drove the model was not itself correlated with survival. Meso‐zooplankton production within the summer quarter (July–September) was more strongly correlated with coho survival than was meso‐zooplankton production in the spring quarter (April–June).     

Food habits and marine survival of juvenile Chinook and coho salmon from marine waters of Southeast Alaska

Little is known about the food habits of juvenile Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon in marine environments of Alaska, or whether their diets may have contributed to extremely high marine survival rates for coho salmon from Southeast Alaska and much more modest survival rates for Southeast Alaskan Chinook salmon. To address these issues, we documented the spatial and temporal variability of diets of both species collected from marine waters of Southeast Alaska during summers of 1997–2000. Food habits were similar: major prey items of both species included fishes, crab larvae, hyperiid amphipods, insects, and euphausiids. Multivariate analyses of diet composition indicated that the most distinct groups were formed at the smallest spatial and temporal scales (the haul), although groups also formed at larger scales, such as by month or habitat type. Our expectations for how food habits would influence survival were only partially supported. As predicted, Southeast Alaskan coho salmon had more prey in their stomachs overall [1.8% of body weight (BW)] and proportionally far fewer empty stomachs (0.7%) than either Alaskan Chinook (1.4% BW, 5.1% empty) or coho salmon from other regions. However, contrary to our expectations, coho salmon diets contained surprisingly few fish (49% by weight). Apparently, Alaskan coho salmon achieved extremely high marine survival rates despite a diet consisting largely of small, less energetically‐efficient crustacean prey. Our results suggest that diet quantity (how much is eaten) rather than diet quality (what is eaten) is important to marine survival.     

Copepods and salmon: characterizing the spatial distribution of juvenile salmon along the Washington and Oregon coast,USA

Yearling Chinook (Oncorhynchus tshawytscha) and coho salmon (Oncorhynchus kisutch) were sampled concurrently with physical variables (temperature, salinity, depth) and biological variables (chlorophyll a concentration and copepod abundance) along the Washington and Oregon coast in June 1998–2008. Copepod species were divided into four different groups based on their water‐type affinities: cold neritic, subarctic oceanic, warm neritic, and warm oceanic. Generalized linear mixed models were used to quantify the relationship between the abundance of these four different copepod groups and the abundance of juvenile salmon. The relationships between juvenile salmon and different copepod groups were further validated using regression analysis of annual mean juvenile salmon abundance versus the mean abundance of the copepod groups. Yearling Chinook salmon abundance was negatively correlated with warm oceanic copepods, warm neritic copepods, and bottom depth, and positively correlated with cold neritic copepods, subarctic copepods, and chlorophyll a concentration. The selected habitat variables explained 67% of the variation in yearling Chinook abundance. Yearling coho salmon abundance was negatively correlated with warm oceanic copepods, warm neritic copepods, and bottom depth, and positively correlated with temperature. The selected habitat variables explained 40% of the variation in yearling coho abundance. Results suggest that copepod communities can be used to characterize spatio‐temporal patterns of abundance of juvenile salmon, i.e., large‐scale interannual variations in ocean conditions (warm versus cold years) and inshore‐offshore (cross‐shelf) gradients in the abundance of juvenile salmon can be characterized by differences in the abundance of copepod species with various water mass affinities.     

Gonadotropins I and II in juvenile coho salmon

The present study was designed to obtain basic endocrine information on GTH I and GTH II in previtellogenic and prespermatogenic coho salmon (immature). Levels of GTH II in pituitary extracts were 6.5 ± 2.0 and 6.7 ± 2.0 pg/μg pituitary protein in male and female fish, respectively. In contrast, the pituitary content of GTH I was approximately 100-fold higher than GTH II (1.302 ± .22 and 1.173 ± .21 ng/μg pituitary protein in male and female fish, respectively). Plasma levels of GTH II in immature salmon were not detectable by RIA whereas plasma GTH I levels were approximately 0.62 ± 0.12 and 0.78 ± 0.13 ng/ml in male and female fish, respectively. Highly purified coho salmon GTH I and GTH II stimulated testicular testosterone production and ovarian estradiol productionin vitro in a similar manner, though GTH II appeared more potent than GTH I. Therefore, it appears that although the salmon pituitary contains predominantly GTH I prior to puberty, the gonad can respond to both GTH I and GTH II.     

Estimating size‐specific brook trout abundance in continuously sampled headwater streams using Bayesian mixed models with zero inflation and overdispersion

Abstract – We examined habitat factors related to reach‐scale brook trout Salvelinus fontinalis counts of four size classes in two headwater stream networks within two contrasting summers in Connecticut, USA. Two study stream networks (7.7 and 4.4 km) were surveyed in a spatially continuous manner in their entirety, and a set of Bayesian generalised linear mixed models was compared. Trout abundance was best described by a zero‐inflated overdispersed Poisson model. The effect of habitat covariates was not always consistent among size classes and years. There were nonlinear relationships between trout counts and stream temperature in both years. Colder reaches harboured higher trout counts in the warmer summer of 2008, but this pattern was not observed in the cooler and very wet summer of 2009. Amount of pool habitat was nearly consistently important across size classes and years, and counts of the largest size class were correlated positively with maximum depth and negatively with stream gradient. Spatial mapping of trout distributions showed that reaches with high trout counts may differ among size classes, particularly between the smallest and largest size classes, suggesting that movement may allow the largest trout to exploit spatially patchy habitats in these small headwaters.     

Spatial distribution of ocean habitat of yearling Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon off Washington and Oregon,USA

We determined the habitat usage and habitat connectivity of juvenile Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon in continental shelf waters off Washington and Oregon, based on samples collected every June for 9 yr (1998–2006). Habitat usage and connectivity were evaluated using SeaWiFS satellite‐derived chlorophyll a data and water depth. Logistic regression models were developed for both species, and habitats were first classified using a threshold value estimated from a receiver operating characteristic curve. A Bernoulli random process using catch probabilities from observed data, i.e. the frequency of occurrence of a fish divided by the number of times a station was surveyed, was applied to reclassify stations. Zero‐catch probabilities of yearling Chinook and yearling coho salmon decreased with increases in chlorophyll a concentration, and with decreases in water depth. From 1998 to 2006, ～ 47% of stations surveyed were classified as unfavorable habitat for yearling Chinook salmon and ～ 53% for yearling coho salmon. Potentially favorable habitat varied among years and ranged from 9 856 to 15 120 km² (Chinook) and from 14 800 to 16 736 km² (coho). For both species, the smallest habitat area occurred in 1998, an El Niño year. Favorable habitats for yearling Chinook salmon were more isolated in 1998 and 2005 than in other years. Both species had larger and more continuous favorable habitat areas along the Washington coast than along the Oregon coast. The favorable habitats were also larger and more continuous nearshore than offshore for both species. Further investigations on large‐scale transport, mesoscale physical features, and prey and predator availability in the study area are necessary to explain the spatial arrangement of juvenile salmon habitats in continental shelf waters.     

Effect of thyroid-stimulating hormone on the physiology and morphology of the thyroid gland in coho salmon,Oncorhynchus kisutch

Activity of the thyroid gland of the coho salmon,Oncorhynchus kisutch, was assessed by physiological, histological and ultrastructural criteria after treatment with graded doses of bovine thyrotropin (bTSH) in January and March. Average plasma thyroxine (T₄) levels increased from about 0.8 ng/ml in saline-injected controls to about 15 ng/ml in fish treated with four intraperitoneal injections of 0.8 lU bTSH. Light-microscope observations of one m-thick sections stained with methylene blue and azure II, showed that bTSH treatment increased epithelial height in both presmolts and smolts. Ultrastructural manifestations of increased activity owing to bTSH treatment were also seen, along with evidence of follicle proliferation. Cytoplasmic organelles and secretory granules increased in numbers with increased dosage of bTSH.     

Dosage-dependent differences in the effect of aromatizable and nonaromatizable androgens on the resulting phenotype of coho salmon (Oncorhynchus kisutch)

This study was conducted to investigate whether aromatization to estrogen could be the cause for the paradoxical feminization of gonads of sexually-undifferentiated fish after treatment with androgen at either high doses or for long periods. The aromatizable androgen 17-methyltestosterone (MT) and the nonaromatizable androgen 17-methyldihydrotestosterone (MDHT) were administered to groups of newly hatched coho salmon (Oncorhynchus kisutch) in a single 2h immersion at concentrations ranging from 6.25 to 6,400µg/l. The effects of treatment were evaluated by determining the resultant proportion of males in each experimental group. The effects of steroid administration on the final mean weight, length and condition factor were also determined. An increase in all these three variables was observed in the groups treated with the higher doses of MT. Regarding the resultant sexual phenotype, the response to both androgens was similar at the majority of doses tested. However, at the highest dose, the proportion of females increased with respect to that of males for MT, but not for MDHT. Since the major difference between the two androgens tested is their capacity to be aromatized, it seems that aromatization to estrogen, rather than inhibition of the biosynthesis of endogenous androgen, may explain the paradoxical feminization encountered.     

Juvenile coho salmon movement,growth and survival in a coastal basin of southern Oregon

Juvenile salmonids display highly variable spatial and temporal patterns of early dispersal that are influenced by density‐dependent and density‐independent factors. Although juvenile coho salmon (Oncorhynchus kisutch) movement patterns in streams and their relationship with body mass and growth have been examined in previous studies, most observations were limited to one season or one stream section. In this study, we monitored the movement of juvenile coho salmon throughout their period of residence in a coastal basin to identify prevalent dispersal strategies and their relationships with body mass, growth rates and survival. Our results revealed seasonally and spatially variable movement patterns. Juvenile coho salmon that dispersed to tidally affected reaches soon after emergence remained more mobile and expressed lower site fidelity than those individuals that remained in upper riverine reaches. We did not detect significantly different growth rates between sedentary and mobile individuals. Although a greater proportion of sedentary than mobile fish survived winter to emigrate from the creek in the spring, reach of residence at the onset of winter influenced these survival estimates. Hence, apparent summer‐to‐smolt survival for mobile individuals was greater than for sedentary fish in tidally influenced reaches, whereas in riverine reaches the sedentary strategy seemed to be favoured. Our research identified complex movement patterns that reflect phenotypic and life history variation, and underscores the importance of maintaining diverse freshwater and estuarine habitats that support juvenile coho salmon before marine migration.     

Modelling the reestablishment of coho salmon (Oncorhynchus kisutch) in Klamath River tributaries after dam removal

The planned removal of four dams on the Klamath River (anticipated 2024) will be the largest river restoration effort ever undertaken on the planet. Dam removal will restore access to >50 km of the Klamath River mainstem for coho salmon, but mainstem habitat may not be suitable for rearing juvenile coho salmon. Instead, small tributaries may provide most rearing habitat for reestablishing coho salmon. We used four approaches to evaluate six Klamath River tributaries above existing dams to assess their potential to support juvenile coho salmon: (1) We measured summer temperature regimes and evaluated thermal suitability. (2) We applied an Intrinsic Potential (IP) model to evaluate large-scale geomorphological constraints on coho salmon habitat. (3) We used the Habitat Limiting Factors Model (HLFM) to estimate rearing capacity for juveniles given current habitat conditions. (4) We developed an occupancy model using data from reference tributaries to predict coho salmon rearing distribution. All six streams had summer temperatures cooler than the mainstem Klamath River. However, five of the streams have barriers that will restrict coho salmon to within 5 km of the confluence with the Klamath River and two were disconnected mid-summer. Despite these constraints, the tributaries will likely produce coho salmon. Most streams had high IP in their lower reaches, the HLFM model estimated a total capacity of 105,000 juvenile coho salmon, and the occupancy model predicted juvenile coho salmon will rear throughout the accessible reaches. Protection and habitat enhancement for these tributaries will be important for coho salmon reestablishment post-dam removal.     

Objective classification of Navarro River salmon habitat: a watershed‐based critical habitat case study

• 1. Prevailing freshwater conservation approaches in the USA stem from policy‐based ecosystem management directives, science‐based gap analyses, and legal interpretations of critical habitats. In California, there has been no systematic prioritization of freshwater habitats critical to the persistence of anadromous salmonid populations.
• 2. Anadromous salmonids provide an optimal focal species for conservation prioritization of freshwater habitats in California owing to their flagship, umbrella and keystone status.
• 3. The Navarro River is a key watershed for both Endangered Species Act and Clean Water Act recovery efforts in the state of California. This watershed serves as a case study in the use of iterative discriminant analysis to objectively classify freshwater habitats critical to the persistence of two species of threatened anadromous salmonids, steelhead (Oncorhynchus mykiss) and coho (Oncorhynchus kisutch).
• 4. Riverscape parameters were used initially to define suitable habitat for focal species; subsequent refinement accounted for human disturbance within the watershed. Results from this study identify 22.1 km of riverine habitat critical to the persistence of coho salmon in the Navarro River watershed, which need active conservation or restoration; it also identified an additional 269.4 km of riverine habitat in need of protection for its aquatic habitat values.

Copyright © 2007 John Wiley & Sons, Ltd.     

Interannual and interdecadal variability in juvenile coho salmon (Oncorhynchus kisutch) diets in relation to environmental changes in the northern California Current

The feeding habits of juvenile coho salmon, Oncorhynchus kisutch, in the northern California Current were examined using samples from two different time periods (1980–85 and 1998–2003) of highly contrasting oceanographic conditions. The goal was to test the influence of interannual and interdecadal changes in taxonomic composition of prey, feeding intensity, and size spectra of teleost prey. Analyses were done for samples taken both early in the summer (June) shortly after the salmon enter the ocean, and also in late summer (September) following some ocean residency. Fish prey dominated coho salmon diets by weight during most years, but this trend was more pronounced during the 1980–85 sampling period. In terms of numerical composition, the diets were more variable on an interannual basis, but decapod larvae and euphausiids were important prey in most years. Pteropods and copepods were important prey during weak upwelling or El Niño years, whereas euphausiids were important during strong upwelling or otherwise highly productive years. Hyperiid amphipods comprised a substantial proportion of the diets only in 2000. Coho salmon showed highly significant differences in prey composition among years or between decades both in weight and numerical composition. The percentage of empty stomachs was highly variable by year in both June and September, but was significantly different only for September between decades. In contrast, an index of feeding intensity did not show many significant changes in either comparison. However, the relative size ratios for fish prey consumed were highly variable by year, and larger than average fish prey were consumed during 1998, leading to the highest feeding intensity observed.