Modelling effects of climate change on Michigan brown trout and rainbow trout: Precipitation and groundwater as key predictors

Understanding how changes in stream temperature affect survival and growth of coldwater fishes, including brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss), is important for conserving coldwater stream fisheries in a changing climate. However, some contemporary stream temperature models assume spatially uniform (i.e. unrealistic) air–stream temperature relationships or demand hydrometeorological predictors (e.g. solar radiation and convection) that are expensive and often impractical for fisheries managers to measure. As such, we produced a relatively cost-effective, management-relevant modelling approach for predicting effects of changes in air temperature, precipitation and groundwater inputs on stream temperature and, consequently, the survival and growth of brown trout and rainbow trout in Michigan, USA. We found that precipitation- and groundwater-corrected stream temperature models (mean adjusted R² = .77, range = 0.65–0.88) performed better than linear air–stream temperature models (mean adjusted R² = .59, range = 0.21–0.80). Stream temperature was projected to increase by 0.07–3.88°C (1%–22%) with simulated changes in air temperature, precipitation and groundwater inputs. The greatest warming was predicted for surface runoff-dominated sites with limited groundwater-driven thermal buffering, where thermal habitat suitability for salmonid survival and growth declined 20%–40%. However, groundwater-dominated sites may not be immune to temperature warming, especially if groundwater temperature increases or groundwater inputs decline in a changing climate. Our modelling approach provides a reliable, cost-effective method for predicting effects of climate change on brown trout and rainbow trout survival and growth, allowing for strategic management actions to increase the thermal resilience and sustainability of salmonid populations (e.g. groundwater conservation and riparian/watershed rehabilitation).     

Effects of reduced summer flows on the brook trout population and temperatures of a groundwater‐influenced stream

Withdrawal of water from streams and groundwater is increasing in Midwestern North America and is a potential threat to coldwater fishes. We examined the effects of summer water withdrawals on brook trout Salvelinus fontinalis populations and water warming rates by diverting 50–90% of summer baseflow from a 602‐m treatment zone (TZ) in a groundwater‐influenced Michigan stream during 1991–1998. We compared density of brook trout in fall, and spring‐to‐fall growth and survival of brook trout, between the TZ and an adjacent reference zone (RZ) whose flows were not altered. Flow reductions had no significant effects on the density of brook trout in fall or spring‐to‐fall survival of brook trout. However, spring‐to‐fall growth of brook trout in the TZ declined significantly when 75% flow reductions occurred. Cold upstream temperatures and the relatively short study reach kept thermal habitat conditions excellent for brook trout in the TZ throughout the dewatering experiments. These findings suggest that brook trout can tolerate some seasonal loss of physical habitat if temperature conditions remain suitable. In summer 1999, we experimentally assessed the influence of flow reduction on the warming rate through the TZ by diverting from 0% to 90% of flow around the TZ in 3‐ or 4‐day trials on a randomised schedule. Average daily temperature increased exponentially as stream flows declined from normal summer levels. Our findings suggest the risk of trout habitat loss from dewatering is potentially large and proportional to the magnitude of withdrawal, especially as thermal conditions approach critical levels for trout.     

Are native brook charr and introduced rainbow trout differentially adapted to upstream and downstream reaches?

Abstract— Due to species introductions, brook charr (Salvelinus fontinalis) and rainbow trout (Oncorhynchus mykiss) occur together in many North American streams and typically exhibit a pattern of distribution in which brook charr numerically dominate headwaters and rainbow trout dominate downstream reaches. It has been suggested that 1) the two species compete or 2) the two species do not compete because they are differentially adapted to environmental conditions found in upstream and downstream zones. We assessed whether there were differences in growth and macrohabitat (pool, run and riffle) selection of brook charr and rainbow trout in upper, middle and lower stream zones of a small Pennsylvania stream. Brook charr and rainbow trout placed in replicate paired enclosures set in upstream and downstream reaches showed no significant differences in growth and survival rates upstream, but brook charr had significantly greater growth rates than rainbow trout downstream. Enclosed fish and free-ranging fish both had negative growth rates during the summer. Enclosed fish lost significantly less weight than free-ranging fish. Instantaneous growth rates of free-ranging adult brook charr and rainbow trout from May to August were negative for both species in all stream zones. Underwater observations of adult brook charr and rainbow trout showed both species occurred significantly more often in pool macrohabitats than expected on the basis of macrohabitat availability, except for rainbow trout in the upstream zone. The proportion of pool macrohabitat was not significantly different among stream zones. Brook charr do not appear to be better adapted to upstream environments in Powdermill Run based on growth, survival and macrohabitat selection during summer. Negative biotic interactions acting along with differential environmental adaptations may explain the pattern of distribution of brook charr and rainbow trout in streams, but long-term transplant experiments with additional life stages will be necessary to examine this hypothesis.     

Association of brook trout and Oncorhynchus spp. with large wood jams in a Lake Superior tributary in a northern old‐growth watershed

Wood in streams functions as fish habitat, but relationships between fish abundance (or size) and large wood in streams are not consistent. One possible reason for variable relationships between fish and wood in streams is that the association of fish with wood habitat may depend on ecological context such as large‐scale geomorphology. We studied the relationship between salmonid assemblages and large wood jams (LWJ) in four settings that differed geomorphically at the scale of the stream corridor along a tributary to Lake Superior in old‐growth conifer–hardwood forest in northern Michigan. The focal fish species of this study were brook trout (Salvelinus fontinalis), which were wild in the stream. Relocation efforts for coaster brook trout (an adfluvial life history variant of brook trout) were ongoing in the study stream. We measured fish abundance and length in pairs of pools of similar size and substrate, but varying in the presence of LWJ; this allowed us to evaluate associations of fish simply with the presence of LWJ rather than with other channel or flow‐shaping functions of LWJ. The length of Oncorhynchus spp. and young introduced brook trout was not strongly correlated with LWJ presence; however, the presence of LWJ in pools was positively correlated with larger wild brook trout. We also found that the correspondence of LWJ with the abundance of salmonids appears to be moderated by the presence of alternative habitat in this relatively natural, old‐growth forest stream.     

The influence of land cover composition and groundwater on thermal habitat availability for brook charr (Salvelinus fontinalis) populations in the United States of America

Abstract – Brook charr (Salvelinus fontinalis) is a sentinel fish species that requires clean, cold water habitats generally resulting from landscapes that allow for surface water flows devoid of sediment and contaminants and high groundwater discharge of cold water. As such, brook charr are impacted by land cover changes that alter stream temperature regimes. We evaluated brook charr populations across their eastern and midwestern range in the United States with reference to thermal habitat availability in relationship to land cover and per cent baseflow. We found that while forest cover does protect brook charr thermal habitat, high levels of groundwater discharge can allow for increased levels of agriculture within a watershed by keeping the water cold in spite of warm ambient summer temperatures. Our study concludes that with enhanced communication among land, water and fisheries managers, society can provide for sustainable stream salmonid populations despite increased threats on cold water resources.     

Field study indicating susceptibility differences between salmonid species and their lineages to proliferative kidney disease

Tetracapsuloides bryosalmonae (Myxozoa: Malacosporea) is the causative agent of proliferative kidney disease (PKD), which affects both wild and farmed salmonid fish. The objective of this study was to outline differences in susceptibility to PKD in different salmonid species, hybrids and breeding lineages. Susceptibility to T. bryosalmonae infection was established based on cumulative mortality, pathological findings and detection of T. bryosalmonae in the kidney using immunohistochemistry and molecular methods. Determination of pure and hybrid individuals of different species in the genus Salvelinus, and dissimilarity of rainbow trout lineages, was performed using traditional polymerase chain reaction (PCR) and microsatellite analyses. Rainbow trout displayed higher disease severity compared with brook trout and Alsatian charr. Moreover, the results indicated differences in infection susceptibility, not only among different salmonid species but also among different lineages of charr and rainbow trout. Our study indicated that some salmonid species and even different lineages of the same species are more suitable for farming under PKD pressure.     

Changes in native bull trout and non‐native brook trout distributions in the upper Powder River basin after 20 years,relationships to water temperature and implications of climate change

Many bull trout populations have declined from non‐native brook trout introductions, habitat changes (e.g. water temperature) and other factors. We systematically sampled the distribution of bull trout and brook trout in the upper Powder River basin in Oregon in the 1990s and resampled it in 2013–2015, examined temperature differences in the habitats of the two species and analysed trends in temperatures in the light of possible increases associated with climate change. The species’ distributions are currently similar to those in the 1990s, except in one stream where bull trout declined. However, bull trout consisting of resident forms remain restricted to a few kilometres of habitat at the upper end of fish distribution. In streams where both species occur, the typical pattern was an intermediate zone of mixed bull trout, brook trout, and hybrids downstream of allopatric bull trout and allopatric brook trout extending farther downstream. Temperature differences between where bull trout and most brook trout occurred were small (0.5–1.0°C August mean). There were no statistical increases in water temperatures in nearby streams since the 1990s and no warming trends in air temperatures for the past 25–60 years. However, peak summer water temperatures are occurring about 3 weeks earlier than 25 years ago. Future effects of climate change, including possible increases in temperature, changes in timing and other factors (e.g. snowpack, flow and extreme events) remain a concern for the persistence of these populations. However, it is difficult to precisely predict where those changes will occur and what they will be.     

Competitive interactions between native and exotic salmonids: a combined field and laboratory demonstration

Abstract –  We studied the impact of two exotic salmonid species (brook trout, Salvelinus fontinalis and rainbow trout, Oncorhynchus mykiss ) on native brown trout ( Salmo trutta fario ) habitat, growth and survival. Habitat selection and vertical distribution between young-of-the-year of the three species were examined in a stream aquarium under different sympatric and allopatric combinations. In addition, similar species combinations were introduced in a Pyrenean mountain stream (southwest France) in order to extend laboratory results to growth and apparent survival. Both laboratory and field results indicated that rainbow trout significantly affected native brown trout habitat selection and apparent survival. On the contrary, brown trout habitat, growth and apparent survival were hardly affected by brook trout. These results support the idea that rainbow trout negatively influence native brown trout, and that competition could influence the outcome of fish biological invasions in freshwater ecosystems.     

Evidence of concealment behavior by adult rainbow trout and brook trout in winter

Abstract – There has been little investigation of the winter ecology of adult trout during winter, especially in regard to concealment behavior. We compared day vs night underwater counts of adult rainbow trout and brook trout from four streams. At water temperatures between 1°C and 9°C, daytime counts accounted for 44% and 16% of nighttime snorkeling counts for rainbow trout and brook trout adults, respectively. As winter progressed, nighttime counts declined more so for brook trout than rainbow trout, but the decline was not significant for either species. Nocturnalism of both species was higher in streams with colder water temperatures. We observed few fish within concealment structure; however, by electrofishing concealment habitat during the day, we captured 10 times more adult trout than we counted immediately beforehand by snorkeling. Adult trout were concealed in cobble-boulder substrate and woody debris during the day. ^Note     

Increasing connectivity of Great Lakes tributaries: Interspecific and intraspecific effects on resident brook trout and brown trout populations

Understanding resident fish population responses to restored connectivity would enhance decision-making on dam removal and fish passage. Since such evaluations are limited in the Great Lakes region of North America, we compared abundance, survival, and growth of resident brook trout and brown trout between sets of Michigan streams where populations were or were not interacting with salmonid species that might be present if connectivity existed. We analysed data from 34 electrofishing index sites to compare resident trout populations between streams without versus with Great Lakes access (and migratory Pacific salmonids), and brook trout populations in Great Lakes inaccessible (land-locked) streams where brown trout were present versus absent. Great Lakes accessibility effects on fish density became increasingly positive for older age groups of brown trout while generally negative for all age classes of brook trout. Brown trout had consistently negative effects on brook trout density in land-locked streams. Increased connectivity had significant effects on annual survival for only one of seven trout age classes modelled, while intraspecific density-dependent effects on survival were significant in six models. Significant intraspecific effects on resident trout growth occurred for seven of eleven age classes examined. Negative interspecific effects of Great Lakes access on resident trout growth were most noticeable for age-0 and age-1 resident trout, age classes that likely compete with juvenile Pacific salmonids. Our findings provide a more robust understanding of how Great Lakes connectivity affects resident trout populations, highlighting negative influences of brown trout on brook trout and intraspecific density-dependent effects.     

Expert opinion on the status and stressors of brook trout,Salvelinus fontinalis,in Ontario

Ontario supports a vast fisheries resource with an abundance of lakes, rivers and streams. A landscape approach to management informed by a broad‐scale monitoring programme has been initiated to assess the status of fisheries within lakes. However, not all species are assessed by this programme, and there is no provincial monitoring of species inhabiting rivers and streams. As such, changes in the status of a species such as brook trout, Salvelinus fontinalis (Mitchill), could be entirely missed. Brook trout is a highly valued and sought after species by anglers within the province, but there are concerns the species is declining. Given the paucity of broad, empirical data, the status and trends of brook trout across the province have been based on expert opinion at multiple local scales. In 2016, a online questionnaire was sent to brook trout experts to determine status, stressors, management approaches and assess risks (magnitude and probability) to lake and river/stream populations in different geographic areas of Ontario. A Bayesian network was used to analyse responses and develop a risk assessment based on expert opinion for brook trout at multiple scales within the province.     

Relationship between stream temperature, thermal refugia and rainbow trout Oncorhynchus mykiss abundance in arid-land streams in the northwestern United States

Abstract – Warm stream temperatures may effectively limit the distribution and abundance of Pacific salmon Oncorhynchus spp. in streams. The role of cold thermal refugia created by upwelling groundwater in mediating this effect has been hypothesized but not quantitatively described. Between June 21 and September 15, 1994, rainbow trout O. mykiss abundance within 12 northeast Oregon (USA) stream reaches was inversely correlated with mean ambient maximum stream temperatures ( r =−0.7, P <0.05). Some rainbow trout used thermal refugia (1–10 m² surface area) that were on average 3–8°C colder than ambient stream temperatures. Within the warmest reaches, high ambient stream temperatures (>22°C) persisted from mid-June through August, and on average 10–40% of rainbow trout were observed within thermal refugia during periods of midday maximum stream temperatures. Frequency of cold-water patches within reaches was not significantly associated with rainbow trout density after accounting for the influence of ambient stream temperature ( P =0.06; extra sum of squares F -test). Given prolonged high ambient stream temperatures in some reaches, the thermal refugia available in the streams we examined may be too small and too infrequent to sustain high densities of rainbow trout. However, these refugia could allow some rainbow trout to persist, although at low densities, in warm stream reaches.     

Seasonal effects of macrophyte growth on rainbow trout habitat availability and selection in a low‐gradient,groundwater‐dominated river

Rainbow trout habitat use is often described in high‐gradient, runoff‐driven, heterotrophic streams where geomorphic features and overhanging riparian vegetation provide channel complexity and cover. However, many rainbow trout populations thrive in rivers with contrasting aquatic habitat. We describe rainbow trout habitat use in a low‐gradient, groundwater‐dominated tailwater river where river flow management and macrophyte growth and senescence largely govern available trout habitat. In the summers of 2013 and 2014, available aquatic habitat (depth, velocity, macrophyte cover, substrate size) was quantified, while individual trout location was determined by radio telemetry and linked to environmental variables. Detailed habitat surveys indicate that macrophyte cover increases throughout the summer and is a strong determinant of in‐stream habitat characteristics. Paired logistic regression shows that adult rainbow trout prefer greater depths. Water depth increases with macrophyte abundance at both reach and local scales as plants restrict flow, and available trout habitat is linked to this seasonal pattern. When macrophyte abundance is high, adult trout show secondary preference for localised areas of lower macrophyte cover but otherwise show no selectivity for macrophyte cover, velocity or substrate size. Results suggest that submerged aquatic plants increased the quantity and quality of rainbow trout habitat as a source of channel complexity and cover. Macrophytes may play a similar role in other low‐gradient streams and should not be overlooked by fisheries managers considering habitat suitability.     

Use of first‐order tributaries by brown trout (Salmo trutta) as nursery habitat in a cold water stream network

Many investigators have examined the importance of suitable in‐stream habitat and flow regime to salmonid fishes. However, there is much less known about the use of small (<5 l·s^?1 discharge) first‐order streams within a larger stream network by salmonids. The purpose of this study was to evaluate the use of small headwater streams by juvenile brown trout Salmo trutta in the Emmons Creek stream network in Wisconsin, USA, and to determine whether abundance was related to habitat variables in these streams. Fishes in eight spring‐fed first‐order streams were sampled during a 7‐month period using a backpack electroshocker and measured for total length. Habitat variables assessed included stream discharge, water velocity, sediment composition and the abundance of cover items (woody debris and macrophytes). Densities of YOY trout ranged from 0 to 1 per m² over the course of the study and differed among first‐order streams. Stepwise multiple regression revealed discharge to be negatively associated with trout density in spring but not in summer. All other habitat variables were not significantly related to trout density. Our results demonstrate the viability of small first‐order streams as nursery habitat for brown trout and support the inclusion of headwater streams in conservation and stream restoration efforts.     

Seasonal habitat use by brook trout,Salvelinus fontinalis (Mitchill), in a second-order stream

Abstract Seasonal habitat use by over-yearling and under-yearling brook trout, Salvelinus fontinalis (Mitchill), was examined in a second-order stream in north-central Pennsylvania, USA. The habitat occupied by brook trout and available habitat were determined in a 0.5-km stream reach during the spring, summer and autumn of 1989 and the spring and summer of 1990. Cover, depth, substrate and velocity were quantified from over 2000 observations of individual brook trout. Habitat used by under-yearling brook trout was more uniform between seasons and years than that used by over-yearling brook trout. Over-yearling brook trout occupied areas with more cover and greater depth than did under-yearling brook trout, suggesting ontogenetic shifts in these variables. Differences for velocity and substrate were not as great as those for cover and depth. The selection of areas with low water velocities governed trout habitat use in spring, whereas cover and depth were the most important habitat variables in summer and autumn. Principal component analysis showed that available habitat and trout habitat centroids diverged most in spring, indicating that habitat selection by brook trout may be greatest at this time.     

Brook trout (Salvelinus fontinalis) population dynamics and mottled sculpin (Cottus bairdi) occurrence in relation to acidic episodes in streams

We monitored water chemistry and populations of brook trout (Salvelinus fontinalis) and mottled sculpins (Cottus bairdi) in 5 streams and some tributaries to determine how the severity of acidic episodes (low pH and high Al) influenced density and distribution of these species. Among streams, Linn Run had the lowest pH (4.8) and highest concentrations of total dissolved Al (>400 μg-l^?1) during periods of high discharge. Densities of brook trout and mottled sculpins were low in Linn Run, but high in tributaries, where pH (6.5) and Al (30 μg-l^?1) remained well below lethal levels. Among the other streams, brook trout density was highest where the acidic episodes were least severe and the density of age-0 brook trout was lowest when precipitation during the early months of the year was above normal. Immigration of brook trout from downstream areas maintained populations in the stream segments subjected to severe episodes. Mottled sculpins were not found in streams with severe episodes.     

Are brown trout Salmo trutta fario and rainbow trout Oncorhynchus mykiss two of a kind? A comparative study of salmonids to temperature‐influenced Tetracapsuloides bryosalmonae infection

Proliferative kidney disease (PKD) of salmonids caused by Tetracapsuloides bryosalmonae causes high mortalities of wild brown trout (Salmo trutta fario) and farmed rainbow trout (Oncorhynchus mykiss) at elevated water temperatures. Here the aim was to compare the temperature‐dependent modulation of T. bryosalmonae in the two salmonid host species, which display different temperature optima. We used a novel experimental set‐up in which we exposed brown trout and rainbow trout to an identical quantified low concentration of T. bryosalmonae for a short time period (1 hr). We followed the development of the parasite in the fish hosts for 70 days. PKD prevalence and parasite kinetics were assessed using qPCR. Exposures were performed at temperatures (12°C and 15°C) that reflect an environmental scenario that may occur in the natural habitat of salmonids. T. bryosalmonae infection was confirmed earliest in brown trout kept at 15°C (day 7 post‐exposure) while, in all other groups, T. bryosalmonae was not confirmed until day 15 post‐exposure. Moreover, significantly greater infection prevalence and a faster increase of parasite intensity were observed in brown trout kept at 15°C than in all other groups. These results indicate that PKD is differentially modulated by water temperature in related host species.     

The effect of competition among three salmonids on dominance and growth during the juvenile life stage

Although non‐native species can sometimes threaten the value of ecosystem services, their presence can contribute to the benefits derived from the environment. In the Great Lakes, non‐native brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) support substantial recreational fisheries. With current efforts underway to restore once‐native Atlantic salmon (Salmo salar) to Lake Ontario, there is some concern that Atlantic salmon will impede non‐native contributions to the recreational fishery because Atlantic salmon exhibit niche overlap with brown trout and rainbow trout, particularly during the juvenile life stage. We therefore examined competition and growth of juvenile Atlantic salmon, brown trout and rainbow trout in semi‐natural streams. We found that brown trout were the most dominant and had the greatest growth rate regardless of what other species were present. Rainbow trout were more dominant than Atlantic salmon and consumed the most food of the three species. However, in the presence of brown trout, rainbow trout fed less frequently and exhibited negative growth as compared to when the rainbow trout were present with only Atlantic salmon. These data suggest that, outside of density‐dependent effects, Atlantic salmon will not impact stream production of brown trout and rainbow trout.     

Growth variability of brook charr (Salvelinus fontinalis) in coastal maine

Brook charr inhabit a wide variety of habitats and exhibit considerable growth variation within and among populations. We used biannual mark–recapture electrofishing surveys and PIT tags at two streams in coastal Maine to examine spatial and temporal variability in brook charr growth. We documented considerable stream‐to‐stream and year‐to‐year variation in the growth of coastal brook charr. Based on 2892 recaptures between 2006 and 2010, we developed a suite of linear mixed models to examine variation in individual growth rates at Stanley Brook as a function of environmental variables. We distilled physical habitat data from surveys in 2010 into principle components for entry into the growth model. Growth was related primarily to an interaction between season and body length, mean water temperature, and instream location. Growth rates were highest in the summer, and smaller individuals grew more rapidly than larger conspecifics in the same stream. Individuals using habitats closer to the head of tide grew faster than those in upstream locations. Physical habitat variation was not an important control of individual growth variation within Stanley Brook. We suggest local variability in growth rates should be considered when developing management strategies for coastal populations.     

Controls for trout and char migratory/resident behaviour mainly in stream systems above and below waterfalls/barriers: a multidecadal and broad geographical review

Northcote TG. Controls for trout and char migratory/resident behaviour mainly in stream systems above and below waterfalls/barriers: a multidecadal and broad geographical review. Ecology of Freshwater Fish 2010: 19: 487–509. © 2010 John Wiley & Sons A/S Abstract – Controls for trout and char migratory and resident behaviour in rivers and streams for above and below natural and man‐made waterfalls/barriers are covered in a multi‐decadal (1950–2000) and wide geographical review (North America, UK, Europe, Japan) that includes reference to over 380 publications. These note 53 for rainbow trout, 61 for cutthroat trout, 104 for brown trout, 47 for bull trout, 41 for brook trout, 35 for Dolly Varden and 42 for white‐spotted char, plus a few general contributions of relevance on some. For each of these species, there has been a major increase in relevant decadal publications since the early 1980s, no doubt in large part because of the upsurge in micro‐genetic methodology for DNA and related technology, coupled with a broadening of interest in stream migratory behaviour of salmonids. Main mechanisms for the control of stream migratory versus resident behaviour appear to cover an interplay among both genetic and environmental factors; in some populations and locations, genetic controls seem to be more important than environmental ones, but in others the reverse. Habitat degradation by various human activities and their introductions of non‐native fish species are becoming causes of reduction in abundance of above and below waterfall stream populations for several of these salmonid species.