Diurnal stream habitat use of juvenile Atlantic salmon, brown trout and rainbow trout in winter

Abstract  The diurnal winter habitat of three species of juvenile salmonids was examined in a tributary of Skaneateles Lake, NY to compare habitat differences among species and to determine if species/age classes were selecting specific habitats. A total of 792 observations were made on the depth, velocity, substrate and cover (amount and type) used by sympatric subyearling Atlantic salmon, subyearling brown trout and subyearling and yearling rainbow trout. Subyearling Atlantic salmon occurred in shallower areas with faster velocities and less cover than the other salmonid groups. Subyearling salmon was also the only group associated with substrate of a size larger than the average size substrate in the study reach during both winters. Subyearling brown trout exhibited a preference for vegetative cover. Compared with available habitat, yearling rainbow trout were the most selective in their habitat use. All salmonid groups were associated with more substrate cover in 2002 under high flow conditions. Differences in the winter habitat use of these salmonid groups have important management implications in terms of both habitat protection and habitat enhancement.     

Use of first‐order tributaries by brown trout (Salmo trutta) as nursery habitat in a cold water stream network

Many investigators have examined the importance of suitable in‐stream habitat and flow regime to salmonid fishes. However, there is much less known about the use of small (<5 l·s^?1 discharge) first‐order streams within a larger stream network by salmonids. The purpose of this study was to evaluate the use of small headwater streams by juvenile brown trout Salmo trutta in the Emmons Creek stream network in Wisconsin, USA, and to determine whether abundance was related to habitat variables in these streams. Fishes in eight spring‐fed first‐order streams were sampled during a 7‐month period using a backpack electroshocker and measured for total length. Habitat variables assessed included stream discharge, water velocity, sediment composition and the abundance of cover items (woody debris and macrophytes). Densities of YOY trout ranged from 0 to 1 per m² over the course of the study and differed among first‐order streams. Stepwise multiple regression revealed discharge to be negatively associated with trout density in spring but not in summer. All other habitat variables were not significantly related to trout density. Our results demonstrate the viability of small first‐order streams as nursery habitat for brown trout and support the inclusion of headwater streams in conservation and stream restoration efforts.     

Seasonal habitat use by brook trout,Salvelinus fontinalis (Mitchill), in a second-order stream

Abstract Seasonal habitat use by over-yearling and under-yearling brook trout, Salvelinus fontinalis (Mitchill), was examined in a second-order stream in north-central Pennsylvania, USA. The habitat occupied by brook trout and available habitat were determined in a 0.5-km stream reach during the spring, summer and autumn of 1989 and the spring and summer of 1990. Cover, depth, substrate and velocity were quantified from over 2000 observations of individual brook trout. Habitat used by under-yearling brook trout was more uniform between seasons and years than that used by over-yearling brook trout. Over-yearling brook trout occupied areas with more cover and greater depth than did under-yearling brook trout, suggesting ontogenetic shifts in these variables. Differences for velocity and substrate were not as great as those for cover and depth. The selection of areas with low water velocities governed trout habitat use in spring, whereas cover and depth were the most important habitat variables in summer and autumn. Principal component analysis showed that available habitat and trout habitat centroids diverged most in spring, indicating that habitat selection by brook trout may be greatest at this time.     

Addition of structural complexity – contrasting effect on juvenile brown trout in a natural stream

In a field experiment, we examined the effects of structural complexity in the form of added artificial plastic plants and shredded plastic bags on growth and abundance of juvenile brown trout (Salmo trutta). Just after emergence, the added complexity had a positive effect on the density, biomass and condition factor of young‐of‐the‐year (0+) brown trout. This difference in density was not present six weeks later. In contrast, both young‐of‐the‐year and older brown trout generally tended to be larger in the simple habitat. Hence, our data suggest that increased complexity initially is beneficial for young‐of‐the‐year individuals probably due to lower risk of predation and increased densities of prey. However, as density increases in the complex environment, it may induce negative density‐dependent effects, here reflected in smaller sized fish in the complex environment. This might force fish to redistribute to habitats with lower densities of conspecifics as they grow larger. We propose that habitat complexity can increase survival of yearlings in early phases and thereby also affect the overall population structure of brown trout in natural streams.     

Effects of instream enhancement structures on brown trout, Salmo trutta L., habitat availability in a channelized boreal river: a PHABSIM approach

Stream channel morphology and hydraulic conditions were measured before and after channel modification and boulder structure placements in a channelized boreal river to determine whether more favourable rearing habitat for brown trout, Salmo trutta L., was created. The assessment was performed using physical habitat simulation (PHABSIM) procedures based on summer and winter habitat preferences of brown trout for depth, velocity and substrate. The results showed that the availability of potential physical trout habitat can be increased in the study river at simulated low and moderate flow conditions by reconstruction of the river bed and placing instream boulder structures. The resulting diversity of depth and velocity conditions created a spatially more complex microhabitat structure. Improved habitat conditions were able to sustain a larger trout population. Hydraulic habitat models, like the PHABSIM framework, seem to be a suitable procedure to evaluate the benefits of physical habitat enhancement.     

Association of brook trout and Oncorhynchus spp. with large wood jams in a Lake Superior tributary in a northern old‐growth watershed

Wood in streams functions as fish habitat, but relationships between fish abundance (or size) and large wood in streams are not consistent. One possible reason for variable relationships between fish and wood in streams is that the association of fish with wood habitat may depend on ecological context such as large‐scale geomorphology. We studied the relationship between salmonid assemblages and large wood jams (LWJ) in four settings that differed geomorphically at the scale of the stream corridor along a tributary to Lake Superior in old‐growth conifer–hardwood forest in northern Michigan. The focal fish species of this study were brook trout (Salvelinus fontinalis), which were wild in the stream. Relocation efforts for coaster brook trout (an adfluvial life history variant of brook trout) were ongoing in the study stream. We measured fish abundance and length in pairs of pools of similar size and substrate, but varying in the presence of LWJ; this allowed us to evaluate associations of fish simply with the presence of LWJ rather than with other channel or flow‐shaping functions of LWJ. The length of Oncorhynchus spp. and young introduced brook trout was not strongly correlated with LWJ presence; however, the presence of LWJ in pools was positively correlated with larger wild brook trout. We also found that the correspondence of LWJ with the abundance of salmonids appears to be moderated by the presence of alternative habitat in this relatively natural, old‐growth forest stream.     

Hydromorphological parameters indicating differences between single‐ and multiple‐channel mountain rivers in Germany,in relation to their modification and recovery

• 1. Despite a growing number of river restoration projects in Central Europe targeting hydromorphological improvements, it is still uncommon to evaluate the effects of restoration. Hydromorphological diversity in straightened, single‐channel sections was compared with restored or naturally developed multiple‐channel sections in German mountain rivers to identify parameters suitable for judging conservation value or restoration success.
• 2. Seven multiple‐channel sections were compared with nearby straightened single‐channel sections. Six hydromorphological parameters at macro‐, meso‐ and micro‐scales were recorded with transect point protocols, including aquatic, terrestrial and transient areas and width of channel features (main and secondary channels, sidearms, standing water bodies, bars, banks, floodplains and embankments). Depth, velocity and substrate type were measured at 400 points per river section. With these data 12 metrics were calculated, to provide comparison between the sections.
• 3. All macro‐ and meso‐scale parameters were well differentiated between single‐channel and multiple‐channel sections: mean channel width and shoreline length increased by factors of 2.1 and 2.4, respectively; the average number of channel feature types increased from two to 10 per section.
• 4. Micro‐scale parameters, such as velocity and depth variance, were significantly different between single‐channel sections and most multiple‐channel sections. Substrate composition was more diverse in the restored sections; the share of the major substrate was on average reduced from 75% to 62%. The Spatial Diversity Index described differences in substrate patterns best. The individual parameters correlated only within scales, but rarely between them.
• 5. Rapid assessment of restoration success or judgement of conservation value is made possible by combining simple macro‐ and meso‐scale parameters, e.g. increase of overall width or of transient areas, and presence of bars and islands. Increase in aquatic area and diversity of habitats are the most appropriate micro‐scale parameters required to evaluate habitat suitability for aquatic organisms. For depth and velocity data, variance should be analysed.

Copyright © 2008 John Wiley & Sons, Ltd.     

Relationships between fish assemblages and habitat characteristics in Iowa’s non‐wadeable rivers

Abstract Non‐wadeable river systems are some of the most diverse aquatic ecosystems, but little work has been conducted to quantify the relationships between fish assemblages and habitat characteristics in them. In 2007 and 2008, 21 reaches were sampled on 16 non‐wadeable rivers across Iowa, USA. Fish were sampled in each reach with three different gears, and habitat characteristics (channel morphology, current velocity, instream cover) were measured using standard procedures. Fish assemblages were structured based on drainage basin and reaches and could be categorised as belonging to one of three groups. Reaches in the Missouri River basin group were narrow and had a high proportion of fine substrate. Reaches in the Mississippi River A group were also narrow but had a high proportion of large rocky substrate. Reaches in the Mississippi River B group tended to be wider, deeper and have higher proportions of fine substrate than the other groups. Fish assemblages were closely related to habitat characteristics and reflected differences among the three groups. Results of this study suggest that stream geomorphology may have a substantial influence on fish assemblage structure in large rivers.     

Evidence of concealment behavior by adult rainbow trout and brook trout in winter

Abstract – There has been little investigation of the winter ecology of adult trout during winter, especially in regard to concealment behavior. We compared day vs night underwater counts of adult rainbow trout and brook trout from four streams. At water temperatures between 1°C and 9°C, daytime counts accounted for 44% and 16% of nighttime snorkeling counts for rainbow trout and brook trout adults, respectively. As winter progressed, nighttime counts declined more so for brook trout than rainbow trout, but the decline was not significant for either species. Nocturnalism of both species was higher in streams with colder water temperatures. We observed few fish within concealment structure; however, by electrofishing concealment habitat during the day, we captured 10 times more adult trout than we counted immediately beforehand by snorkeling. Adult trout were concealed in cobble-boulder substrate and woody debris during the day. ^Note     

Spatial patterns in fish biomass and relative trophic level abundance in a wastewater enriched river

Abstract –  It is generally accepted that nutrient enrichment of aquatic systems will lead to increased production at the top trophic level (fish). We found that in the wastewater enriched Bow River, Alberta rainbow trout ( Oncorhynchus mykiss ) biomass increased over 25-fold, and brown trout ( Salmo trutta ) biomass increased 5-fold, however total sportfish biomass did not increase below the nutrient input point source. This was due to a dramatic downstream decrease in mountain whitefish ( Prosopium williamsoni ) biomass to 2% of the average biomass upstream of the municipal effluent source. The spatial pattern over a 177-km river section encompassing the city of Calgary, showed that the increase in trout abundance approximately tracked the expected nutrient concentrations in the river, but with a downstream lag of 20–30 km. Mountain whitefish biomass over the 177 km was inversely related to the dominant trout species, rainbow trout. Invertebrate abundance, macrophyte biomass and phytoplankton biomass all increased below the wastewater treatment plant outfalls. However, periphyton data were highly variable and showed no response. We propose several hypotheses as regards the factors that may have led to the decrease in mountain whitefish, based on the data from all trophic levels and the spatial pattern for fish biomass. Proposed factors influencing the mountain whitefish decline were; altered competitive ability because of macrophyte abundance, ammonia toxicity and barriers to movement (weirs).     

Habitat niche separation of the nonnative rainbow trout and native masu salmon in the Atsuta River,Hokkaido, Japan

The mechanisms by which nonnative species establish populations can be classified into two broad categories: they usurp the niches of native species through interspecific competition, or they avoid this intense interspecific competition by making use of minimal niche overlap with the native species. In this study, we considered how a nonnative salmonid species, the rainbow trout Oncorhynchus mykiss, established a population in the presence of the native salmonid species, the masu salmon O. masou, in Hokkaido, Japan. Circumstantial field evidence shows that the masu salmon exceeds the rainbow trout in abundance and suggests that these species use different types of cover habitat (rainbow trout abundance increases with increasing abundance of large woody debris aggregates, whereas masu salmon abundance increases with increasing abundance of undercut banks). These results imply that the rainbow trout established a population due to minimal niche overlap with the masu salmon, and not by competitive exclusion of the native species.     

The loss of large wood affects rocky mountain trout populations

Western U.S. rivers are currently influenced by legacy effects of reduced large wood (LW) loading and retention that has substantially reduced in‐stream habitat complexity. Large wood is typically associated with streams in undisturbed old‐growth forest and in the correct geomorphic context can drastically alter stream and valley habitat complexity. Streams with LW are typically multichannel and depositional, while streams lacking LW, due to relatively recent wildfire or logging (<200 years ago), are usually single channelled and erosional. We compared population biomass and individual growth rates of Brook Trout Salvelinus fontinalis in streams across a gradient of wood volumes. At both the square metre and valley length scales, standing stock biomass of aquatic invertebrates was the best predictor of trout biomass. However, at the valley scale, the number of pools was important in predicting trout biomass in combination with standing stock biomass of aquatic invertebrates. Individual growth rates of age‐1 Brook Trout were negatively affected by increasing density; however, growth rates for the largest and smallest individuals at each site were unaffected by density. Our results suggest the pool habitat created by LW acts synergistically with prey availability to dramatically increase trout populations. However, in streams lacking LW, negative effects of detrimental land use practices have persisted >100 years, suggesting that recovering lost animal production in mountain stream networks will only occur at decadal to century time scales.     

Influence of aquatic plant‐specific habitat on an assemblage of small neotropical floodplain fishes

Dibble ED, Pelicice FM. Influence of aquatic plant‐specific habitat on an assemblage of small neotropical floodplain fishes.
Ecology of Freshwater Fish 2010: 19: 381–389. © 2010 John Wiley & Sons A/S Abstract – This study investigated the effects of plant‐specific habitat on the distribution of young and small adult fishes in lagoons of the Upper Paraná River floodplain, Brazil. We compared fish catch per unit effort (CPUE) and species richness and used an indirect gradient analysis to investigate fish‐plant relationships within three aquatic macrophytes beds (Cabomba furcata, Eichhornia azurea, Nymphaea amazonum), and explored microhabitat influence (indexed by eight variables related to physical structure and water quality) on the structure of fish assemblages. Rarefaction analysis was used to compare fish species richness among the vegetated habitats. We captured a total of 1599 fish constituting 23 species, 7 families and 3 orders. Fish CPUE and species richness increased relative to microhabitat structure innate to the macrophytes; higher CPUE and richness were observed in C. furcata beds, a submerged aquatic macrophyte with finely dissected leaves. On the contrary, N. amazonum, a species that provides low microhabitat complexity, harbored fewer individual fish and number of species. Reproduction dynamics, hydrology and the amount of available plant‐generated habitat structure (surface effect) contributed to the disproportionally high number of individuals captured during the dry season. Our data suggest that the microhabitat physical structure (e.g., edge distance, stem density and patch size) provided by macrophyte beds in the lagoons of the Upper Paraná River may play a more important role than physicochemistry (e.g., oxygen, temperature and pH) at mediating distribution patterns of small‐sized fishes.     

Season-specific survival rates and densities of coastal cutthroat trout across stream sizes in southwestern British Columbia

Variation in seasonal survival rates, densities and growth rates of coastal cutthroat trout (Oncorhynchus clarkii clarkii) were assessed across a size gradient of small, forested streams in the Pacific Northwest. We used a robust, mark-recapture study, stratified seasonally to estimate monthly survival rates of trout in coastal British Columbia (not including young-of-the-year). Survival estimates showed that the summer season had the lowest monthly survival rates (0.907) across all streams in our study (0.927 remainder of year). Within the size range of the seven small streams studied, low-flow habitat availability (defined by residual pool depth in summer) was the best predictor of mean monthly survival rates, supporting the hypothesis that trout survival increases with the quantity of aquatic habitat, particularly depths of residual pools. In addition, there was an asymptotic relation between water depth and survival rates, where beyond ~20 cm of residual pool depth, greater depth did not confer greater rates of trout survival. Growth rates in all but the largest stream were also lowest during summer. While densities tended to be higher in streams with greater residual depth, this was not significant. Body mass in a given season was a good predictor of survival to the next sampling period. The distribution and success of resident cutthroat trout populations in small streams appear to be constrained by summer low-flow periods and specific geomorphologies that support deeper pools.     

A riverscape perspective of Pacific salmonids and aquatic habitats prior to large‐scale dam removal in the Elwha River,Washington, USA

Abstract Dam removal has been increasingly proposed as a river restoration technique. In 2011, two large hydroelectric dams will be removed from Washington State’s Elwha River. Ten anadromous fish populations are expected to recolonise historical habitats after dam removal. A key to understanding watershed recolonisation is the collection of spatially continuous information on fish and aquatic habitats. A riverscape approach with an emphasis on biological data has rarely been applied in mid‐sized, wilderness rivers, particularly in consecutive years prior to dam removal. Concurrent snorkel and habitat surveys were conducted from the headwaters to the mouth (rkm 65–0) of the Elwha River in 2007 and 2008. This riverscape approach characterised the spatial extent, assemblage structure and patterns of relative density of Pacific salmonids. The presence of dams influenced the longitudinal patterns of fish assemblages, and species richness was the highest downstream of the dams, where anadromous salmonids still have access. The percent composition of salmonids was similar in both years for rainbow trout, Oncorhynchus mykiss (Walbaum), coastal cutthroat trout, Oncorhynchus clarkii clarkii (Richardson) (89%; 88%), Chinook salmon, Oncorhynchus tshawytscha (Walbaum) (8%; 9%), and bull trout, Salvelinus confluentus (Suckley) (3% in both years). Spatial patterns of abundance for rainbow and cutthroat trout (r = 0.76) and bull trout (r = 0.70) were also consistent between years. Multivariate and univariate methods detected differences in habitat structure along the river profile caused by natural and anthropogenic factors. The riverscape view highlighted species‐specific biological hotspots and revealed that 60–69% of federally threatened bull trout occurred near or below the dams. Spatially continuous surveys will be vital in evaluating the effectiveness of upcoming dam removal projects at restoring anadromous salmonids.     

Defining critical habitat conditions for the conservation of three endemic and endangered cyprinids in a Mediterranean intermittent river before the onset of drought

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Diel microhabitat use of age-0 bull trout in Indian Creek, Washington

Abstract – We studied diel microhabitat use at the focal point of age‐0 bull trout, Salvelinus confluentus, in Indian Creek, Washington during mid‐summer and fall of 1997. Microhabitat variables included water depth and velocity, distance from the stream bottom, habitat and refuge use, substrate type, and substrate embeddedness. Age‐0 fish were located over fines and gravel substrates in shallow, low‐velocity water near stream margins, but were located in shallower water at night. Bull trout were highly associated with loose substrate, and used the substrate interstices for refuge cover. Diurnal bull trout counts decreased and no age‐0 fish were observed after 15 September at water temperatures below 6.1 °C. Nocturnal counts remained relatively constant throughout the study. Our results suggest that age‐0 bull trout surveys be conducted at night when summer water temperatures begin to decline.     

Projected impacts of climate change on stream salmonids with implications for resilience‐based management

The sustainability of freshwater fisheries is increasingly affected by climate warming, habitat alteration, invasive species and other drivers of global change. The State of Michigan, USA, contains ecologically, socioeconomically valuable coldwater stream salmonid fisheries that are highly susceptible to these ecological alterations. Thus, there is a need for future management approaches that promote resilient stream ecosystems that absorb change amidst disturbances. Fisheries professionals in Michigan are responding to this need by designing a comprehensive management plan for stream brook charr (Salvelinus fontinalis), brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) populations. To assist in developing such a plan, we used stream‐specific regression models to forecast thermal habitat suitability in streams throughout Michigan from 2006 to 2056 under different predicted climate change scenarios. As baseflow index (i.e., relative groundwater input) increased, stream thermal sensitivity (i.e., relative susceptibility to temperature change) decreased. Thus, the magnitude of temperature warming and frequency of thermal habitat degradation were lowest in streams with the highest baseflow indices. Thermal habitats were most suitable in rainbow trout streams as this species has a wider temperature range for growth (12.0–22.5 °C) compared to brook charr (11.0–20.5 °C) and brown trout (12.0–20.0 °C). Our study promotes resilience‐based salmonid management by providing a methodology for stream temperature and thermal habitat suitability prediction. Fisheries professionals can use this approach to protect coldwater habitats and drivers of stream cooling and ultimately conserve resilient salmonid populations amidst global change.     

Potential population and assemblage influences of non‐native trout on native nongame fish in Nebraska headwater streams

Non‐native trout are currently stocked to support recreational fisheries in headwater streams throughout Nebraska. The influence of non‐native trout introductions on native fish populations and their role in structuring fish assemblages in these systems is unknown. The objectives of this study were to determine (i) if the size structure or relative abundance of native fish differs in the presence and absence of non‐native trout, (ii) if native fish‐assemblage structure differs in the presence and absence of non‐native trout and (iii) if native fish‐assemblage structure differs across a gradient in abundances of non‐native trout. Longnose dace Rhinichthys cataractae were larger in the presence of brown trout Salmo trutta and smaller in the presence of rainbow trout Oncorhynchus mykiss compared to sites without trout. There was also a greater proportion of larger white suckers Catostomus commersonii in the presence of brown trout. Creek chub Semotilus atromaculatus and fathead minnow Pimephales promelas size structures were similar in the presence and absence of trout. Relative abundances of longnose dace, white sucker, creek chub and fathead minnow were similar in the presence and absence of trout, but there was greater distinction in native fish‐assemblage structure between sites with trout compared to sites without trout as trout abundances increased. These results suggest increased risk to native fish assemblages in sites with high abundances of trout. However, more research is needed to determine the role of non‐native trout in structuring native fish assemblages in streams, and the mechanisms through which introduced trout may influence native fish populations.     

Influence of Physical Factors on Density of Stocked Brown Trout (Salmo trutta fario L.) in a Danish Lowland Stream

Physical factors and brown trout densities were studied in a small Danish lowland stream. The densities of brown trout larger than 15 cm were significantly correlated with gradient, mean depth, coefficient of variation in current velocity 7 cm above the bottom, the ratio between wetted perimeter and width, amount of overhanging banks and degree of macrophyte cover. Coefficient of variation in current velocity 7 cm above the bottom was the most important factor for brown trout density (r_s= 0.8364, 24 df, (P < 0.001)), which supports the idea of this value as a measure of stream complexity. A rather small relation between trout density and amount of overhanging bank cover (r_s= 0.4179, 24 df, (P < 0.050)), contrary to the closer relationships found in previous studies, is discussed as an effect of the self-shading capacity of this rather narrow and deep stream.