Marine mortality in the river? Atlantic salmon smolts under high predation pressure in the last kilometres of a river monitored for stock assessment

The River Bush (Northern Ireland) is an index river for the estimation of Atlantic salmon, Salmo salar L., stock size, population dynamics and marine survival rates. Marine survival estimates are based on the number of smolts counted at a trap 3.5 km upstream of the river outlet. The survival from release to coastal inshore waters for acoustic‐tagged smolts released at the Bushmills trap varied between 32% and 68%, with both year and brightness during river exit playing a significant role in explaining the variations in survival. This constitutes an important survival bottleneck. Contrary to true marine mortality, this significant loss of smolts in the river and nearshore environments could be reduced by focused management actions. More studies on other rivers, where smolts are enumerated above the head of tide, could further partition smolt and post‐smolt mortality, help differentiate true marine survival and help understand fluctuations in adult returns.     

Stocking location and predation by marine fishes affect survival of hatchery‐reared Atlantic salmon smolts

Abstract Release strategies of hatchery‐reared Atlantic salmon, Salmo salar L., smolts were compared by studying survival and migration of smolts (n = 99) and their predators (Atlantic cod, Gadus morhua L., n = 8; and saithe, Pollachius virens (L.), n = 2) during the first 37 km of the marine migration using acoustic telemetry. Survivorship was higher in smolts released at the river mouth (30%) compared with smolts released in the river (12%). This was likely due to mortality or reduced migratory behaviour in fresh water. The marine mortality was 37% during the first 2 km after leaving the river (at least 25% mortality because of predation from marine fishes), and total marine mortality over 37 km was 68%. Detection‐depth data were useful for evaluating whether the tagged smolts were alive or predated; mortality during the first 2 km of outward migration would have been underestimated at 26% instead of 37% without the analysis of depth detection. Transmitters from consumed post‐smolts remained in predators for up to 47 days (average 29 days).     

Atlantic salmon smolts in the Irish Sea: First evidence of a northerly migration trajectory

Results from an acoustic telemetry study revealed for the first time a northerly migration route for Atlantic salmon (Salmo salar L.) smolts leaving the east coast of Ireland. Atlantic salmon smolts were tagged in spring 2019 in the Castletown and Boyne rivers. Three tagged smolts registered on disparate deep‐water offshore marine receivers as they travelled northwards out of the Irish Sea through the North Channel. One fish had migrated an estimated 250 km in a period of 32 days. The remaining two individuals were detected on receivers located off the Northern Ireland coast, further corroborating the northward migration of salmon smolts through the Irish Sea.     

Atlantic salmon living on the edge: Smolt behaviour and survival during seaward migration in River Minho

The Atlantic salmon (Salmo salar) population of the River Minho represents the southern natural distribution edge of the species. In line with the general trend for Atlantic salmon, this population has been declining over the years and is now at a critically low level. With river connectivity compromised by a large dam just 80 km upstream the River Minho's outlet, and an expected deterioration of climatic conditions, it is urgent to increase our knowledge of this population and identify survival bottlenecks that can be addressed. In this study, we used radio and acoustic telemetry to track Atlantic salmon smolts during their migration towards the sea and record both survival rates and possible causes of mortality. The recorded survival for the tagged migrating Atlantic salmon remained below 55% in the three studied years, indicating that the in‐river loss of smolts is likely a strong constraint to this population. From the smolts to which a likely cause of mortality could be attributed (34%), most appear to have been removed from the river (25%), with two confirmed events of bird predation and one of mammal predation. Interestingly, eight tags were recorded moving back upstream, likely indicating predation by larger fish. Increasing predator populations (e.g. cormorants, Phalacrocorax carbo) and invasive predators (e.g. American mink, Neovison vison) lead to elevated predation pressure on this already strained Atlantic salmon population, and further studies quantifying their impact in more detail could prove crucial for future management considerations.     

Riverine and fjord migration of wild and hatchery‐reared Atlantic salmon smolts

Migration timing, speed, survival and effects of environmental parameters on migration, between wild and hatchery produced Atlantic salmon, Salmo salar L., smolts in the River Lærdalselva were studied. Hatchery‐reared (n = 40) and wild pre‐smolts (n = 40) were tagged with acoustic tags, and an array of receivers along the migration route was deployed. In all, 77 and 85% of the fish from the two groups, respectively, were recorded as migrating smolts, that is, predation rate and/or numbers of fish opting to remain in the river were low. Hatchery‐reared smolts showed a migration pattern, speed and migration route similar to wild smolts, even though the time period between river release and onset of migration was relatively short. Both groups of smolt showed high migration speed through both the river and the fjord compared with other studies.     

The onset of downstream movement of juvenile Atlantic salmon, Salmo salar L., in a chalk stream

The downstream movements of wild Atlantic salmon, Salmo salar L., from their established feeding territories in the River Itchen, Hampshire, UK, were logged continuously over an 11-month period using a passive integrated transponder (PIT) antenna system. The time of these movements was then related to a number of monitored and calculated environmental parameters. Initial downstream movement of smolts in April was correlated with the onset of darkness, at which time salmon moved from their established feeding territories alone. No relationship was found between the number of smolts migrating and river flow or maximum daily water temperature. The timing of downstream movement of parr between October and March was random with regard to sunset and time of maximum daily water temperature, suggesting the environmental cue that initiates movement may be different outside the spring smolt period.     

Diel migration pattern of Atlantic salmon (Salmo salar) and sea trout (Salmo trutta) smolts: an assessment of environmental cues

The timing of smolt migration is a key phenological trait with profound implications for individual survival during both river descent and the subsequent sea sojourn of anadromous fish. We studied relationships between the time of smolt migration, water temperature and light intensity for Atlantic salmon (Salmo salar) and sea trout (Salmo trutta). During 2006–2012, migrating smolts descending the southern Norway River Storelva were caught in a rotary screw trap located at the river mouth. The date of 50% cumulative smolt descent correlated significantly with the date when the river temperature exceeded 8°C for both Atlantic salmon and sea trout smolts. In 2010, smolts of both species were passive integrated transponder (PIT)‐tagged, and the diel timing of their migration was precisely documented. The degree of night migration decreased in both species as the river temperature rose, and at temperatures above 12–13°C, more smolts migrated during day than during night. A multinomial model was fitted for estimating temperature and species effects on probabilities of migration during night, daytime, dusk and dawn. Atlantic salmon smolts preferred migrating under lower light intensities than sea trout smolts during early, but not late spring when both species migrated during bright daylight. In accordance with the early‐season tendency to migrate at night, Atlantic salmon smolts migrated more during darker hours of the day than sea trout. In both species, smaller smolts migrated under dark conditions than during light conditions. Most of the findings on thermal, light and temporal effects on the observed smolt migration pattern can be explained as adaptations to predation avoidance.     

The settlement and reproductive success of Lepeophtheirus salmonis (Krøyer 1837; Copepoda: Caligidae) on atypical hosts

The reproductive success of Lepeophtheirus salmonis settled on host and non‐host fish has been compared. Triplicate single species tanks of Atlantic salmon, marine three‐spined sticklebacks, saithe and Atlantic cod were exposed to 10 adult female L. salmonis per tank (n=30 lice per species). Adult female L. salmonis settlement and egg string production occurred only on salmon and cod, with no egg production occurring on saithe and three‐spined sticklebacks. The number of eggs in egg strings, hatching success of eggs and the survival of all larval stages to the copepodid stage were severely affected by the species of fish on which female L. salmonis had settled. L. salmonis settled on cod produced significantly fewer eggs, lower hatching rates and lower survival rates of larvae than females on Atlantic salmon. The production of egg strings by L. salmonis females infecting cod, which successfully hatch and moult through to the infective copepodid stage, albeit in small numbers, is discussed in terms of the implications to aquaculture and salmon and cod farming scenarios.     

Density of Atlantic salmon, Salmo salar L., smolts in the river Orkla, a large river in central Norway

Abstract. Estimates of Atlantic salmon, Salmo salar L., smolt density were conducted in the river Orkla, central Norway, in spring 1983 by tagging 2671 smolts. The fish were captured in three sections of the river and marked by cutting the fins. Smolts larger than 110 mm were separated from fish between 100 and 110 mm, resulting in four series of markings. During the smolt run, 1285 smolts were captured in two traps lowered from a bridge, situated downstream of the area of the river where the fish were tagged. The recapture of tagged smolts was 27 specimens (1%). varying between 0·8% and 1·2% for the different series of markings. The estimated smolt densities varied between 2·8 and 4·4 smolts per 100 m2 from the four markings, with 4·1 smolts per 100 m2 (95% confidence interval 2·8–6·1) based on the total number of recaptures.     

Offspring investment in wild Atlantic salmon (Salmo salar): relationships with smolt age and spawning condition

We investigated the independent effects of age at smolting and body condition at the time of spawning on egg production by female Atlantic salmon (Salmo salar). For a given body size, female salmon that had smolted as juveniles after 2 years in fresh water produced smaller, more numerous eggs than females that smolted 1 year later. Furthermore, fecundity (but not egg size) was related positively to maternal body condition at spawning. Given that age at smolting is closely related to juvenile growth rate; results from this study suggest that conditions experienced by female Atlantic salmon during both early life and adulthood have implications for the size and number of eggs that they produce.     

Migration pathways,speed and mortality of Atlantic salmon (Salmo salar) smolts in a Scottish river and the near‐shore coastal marine environment

Long‐distance migration of Atlantic salmon (Salmo salar) is known to result in high levels of mortality. For a species experiencing global population decline, it is thus vital to better understand migration behaviour, both in the river and marine stages. Atlantic salmon smolts (n = 50) were tracked using acoustic telemetry in the River Deveron, Scotland, and adjacent coastal area. Higher rates of mortality were observed in the river (0.77% per km) than the early marine stage of migration (0.0% per km). Mortality likely resulted from predation. Higher swim speeds were recorded in the early marine stage compared with the river (marine = 7.37 ± 28.20 km/day; river = 5.03 ± 1.73 km/day [mean ± SD]), a potential predator avoidance behaviour. The majority of smolts leaving the river did so in darkness and on a flooding tide. Overall river and marine migration success were linked to nights of lower lunar brightness. Marine migration speed decreased with increasing environmental noise levels, a finding with implications for fisheries management. The migration pathway in the early marine environment did not follow obvious geographical features, such as the coastline. Thus, we suggest that early marine environment pathways are more influenced by complex water currents. These findings highlight factors that influence smolt migration survival and behaviour, areas on which future research should focus.     

Experimental induction of mouthrot in Atlantic salmon smolts using Tenacibaculum maritimum from Western Canada

Mouthrot, or bacterial stomatitis, is a disease which mainly affects farmed Atlantic salmon, (Salmo salar, L.), smolts recently transferred into salt water in both British Columbia (BC), Canada, and Washington State, USA. It is a significant fish welfare issue which results in economic losses due to mortality and antibiotic treatments. The associated pathogen is Tenacibaculum maritimum, a bacterium which causes significant losses in many species of farmed fish worldwide. This bacterium has not been proven to be the causative agent of mouthrot in BC despite being isolated from affected Atlantic salmon. In this study, challenge experiments were performed to determine whether mouthrot could be induced with T. maritimum isolates collected from outbreaks in Western Canada and to attempt to develop a bath challenge model. A secondary objective was to use this model to test inactivated whole‐cell vaccines for T. maritimum in Atlantic salmon smolts. This study shows that T. maritimum is the causative agent of mouthrot and that the bacteria can readily transfer horizontally within the population. Although the whole‐cell oil‐adjuvanted vaccines produced an antibody response that was partially cross‐reactive with several of the T. maritimum isolates, the vaccines did not protect the fish under the study's conditions.     

Effects of release timing on migration behaviour and survival of hatchery‐reared Atlantic salmon smolts in a regulated river

In this study, 221 two‐year‐old hatchery‐reared salmon, Salmo salar, smolts were tagged with radio transmitters over a period of three consecutive years and released in the river in groups of 20–21 fish in various dates between late April and early June. Tagged smolts were tracked during their downstream migration in the lower 36‐km stretch of the regulated River Oulujoki, with the focus on the effects of release date, water temperature and river flow on migration behaviour and survival. The results indicate that release timing and river temperature have profound effects on the initiation of migration, swimming speed and survival of released S. salar smolts. Smolts released early in the spring in cold waters ceased migration after brief downstream movement and were vulnerable to predation, whereas the migration speed and survival rates increased markedly for smolts released later in the spring.     

Fecundity of the sea louse Caligus rogercresseyi on its native host Eleginops maclovinus captured near salmon farms in southern Chile

The sea louse (Caligus rogercresseyi) is the most significant parasitic pathogen in Chilean salmon farms, and it infects farmed salmon and native host fish. Fecundity is one of the most important parameters for understanding the population dynamics of a species; however, this information is scarce for this parasite. The fecundity of C. rogercresseyi females collected from native hosts (Eleginops maclovinus) captured near salmon farms in southern Chile was measured to evaluate the reproductive output of this parasite on this host fish. From June 2008 to May 2009, 212 specimens of E. maclovinus were examined. Each fish was measured, and all its parasites were collected, sorted and counted. Seventy‐nine ovigerous C. rogercresseyi females (OFs) were measured. Total body length, egg string length and total number of eggs per string were recorded for each parasite. Ovigerous females body length varied between 3.9 and 5.0 mm. Fecundity varied between 12 and 56 eggs string^?1, and it was correlated with OF body length. Temporal variations in OF fecundity were explained by co‐variation in OF body length, but not by month. Ovigerous females on E. maclovinus were smaller and showed lower fecundity than OFs on farmed salmon. Our results suggest that native hosts play a secondary role in C. rogercresseyi egg production in Codigue bay.     

Artificial reconditioning, spawning and survival of Atlantic salmon, Salmo salar L., kelts in salt water and survival of their Fl progeny

Abstract. Atlantic salmon kelts were successfully reconditioned in salinities of 16% and 28%o using a moist pellet diet. Two groups of reconditioned kelts were re-acclimated to fresh water in the autumn tu prevent super chitling in salt water during the winter. The feeding response and growth of salmon kelis. both years, was highest when salinities were maintained at 28% during the winter and 16%during the summer. However, other salinities also provided acceptable growth rates. Two-sea-winter salmon kelts reconditioned at a slower rate in all groups than 1-sea-winter salmon kelts. Kelt survival was 93.1% the first year and 82.7% the second year. Gonnd maturation occurred in 17.9% of the female 1-sea-winter kelts and 40.6% of the male 1-sea-winter kelts after the first year. At the end of the second year. 83.3% of the 1-sea-winter female kelts and 96.3% of the l-sea-winter male kelts matured and spawned. Reconditioned salmon kelts with a mean fork length of 68.4 cm produced 7261 eggs per fish with a mean egg diameter of 5.70 mm and a fecundity of 2262 eggs.kg⁻¹, Survival (Fl) from the green egg stage to the alevin and smolt stages was 73.5% and 38.8% respectively. The smolt to adult return rule based on unadjusted tug recaptures was 2.20%.     

Levels of Renibacterium salmoninarum antigens in resident and anadromous salmonids in the River Ellidaár system in Iceland

In relation to stock enhancement programmes, wild salmon broodfish have been routinely screened for the presence of Renibacterium salmoninarum antigens (Rs‐Ag) for decades. A sudden increase in the prevalence of Rs‐Ag experienced caused extensive problems to this industry as eggs from positive fish are discarded. The prevalence and level of Rs‐Ag were examined in resident and anadromous salmonids in the River Ellidaár system and the progress of Rs‐Ag in a cohort of salmon followed. Both prevalence and Rs‐Ag levels were high in resident salmonids and emigrating salmon smolts in the river system. When the smolts re‐entered their home river as adults the following summer, they were almost free of Rs‐Ag, but the longer they stayed in the river, the more Rs‐Ag they acquired; the majority being positive at spawning. This study demonstrates a high level of Rs‐Ag in salmonids in the River Ellidaár system which significantly reduces in the salmon during its seawater phase. Accordingly, it seems ideal to sample salmon broodfish as soon as possible after ascending the river and subsequently transfer to Rs‐free environment for storage until stripping, which could result in lower Rs‐prevalence and minimize the problems that stock enhancement programmes have faced due to Rs‐positive wild broodfish.     

Catchability of Atlantic salmon at high water temperatures: Implications for river closure temperature thresholds to catch and release angling

Warming water temperatures, combined with increased mortality following catch and release, could have synergistic consequences if rivers remain open to catch and release at high water temperatures, and catchability of fish remains similar across water temperatures. Here archived data for Atlantic salmon, Salmo salar L., were used to (a) quantify the influence of water temperature on catchability and (b) refine estimates of absolute catch and release mortality to incorporate the relationship between temperature and catchability. A significant decline in the number of Atlantic salmon caught at warmer water temperatures was found after accounting for the effects of river water height, fishing effort, run duration and year-to-year differences in fish abundance. Overall, absolute catch and release mortalities were predicted to be infrequent at cool river temperatures. At river temperatures sometimes associated with fishing closures, mortality due to the catch and release ranged from 6% to 14%. Although post-release mortality increases with water temperature, it is somewhat compensated by the reduced catchability of Atlantic salmon. Thus, the catchability component of catch and release is an integral consideration when evaluating the effectiveness of river closure temperature thresholds when managing catch and release angling.     

Preliminary assessment of the environmental and selective effects of a captive breeding and rearing programme for endangered Atlantic salmon,Salmo salar

The selective and environmental effects of captivity on several fitness‐correlated traits were assessed in smolts of endangered Atlantic salmon, Salmo salar L., from the inner Bay of Fundy, produced via artificial spawning and released into the wild as juveniles. Smolts were sampled as they migrated downstream and identified through microsatellite‐based parentage analysis as offspring of either wild‐spawning adults or adults that were spawned in captivity. Overall, captive‐origin smolts exhibited a significantly later run timing and smaller body size than wild smolts. Significant differences in run timing and body size were also found between captive‐origin smolts that had experienced rearing environments that differed in duration of captivity and thermal regime. Significant differences in run timing, fork length and weight were found between first and second generation captive‐origin smolts, although the expression of these differences depended on the rearing environment experienced, suggesting a possible genotype by environment effect. The ratio of effective‐to‐census number of breeders that produced the captive‐origin smolts was higher than that of the wild‐origin smolts due to successful captive breeding management practices. These results have direct implications for captive breeding and rearing programmes for salmonids and wider implications for understanding the rates of evolutionary and environmentally induced change that can occur in captivity.     

Linking habitat characteristics with juvenile density to quantify Salmo salar and Salmo trutta smolt production in the river Sävarån,Sweden

Abstract Habitat mapping along 85 km of river was related to juvenile (15 years of electric fishing) and smolt (3 years of screw‐trapping) abundance data to estimate salmon, Salmo salar L., and sea trout, Salmo trutta L., smolt production in the River Sävarån, northern Sweden. Spawning site selection by radio‐tagged salmon (n = 12) and sea trout (n = 4) was also assessed. Fifty‐one hectares of potential spawning and nursery habitat was found in the main stem river, representing 25% of the total river area. These areas were estimated to yield 1300–7580 salmon and 630–3540 sea trout smolts based on juvenile densities, equating with 3 years of screw‐trap data (2990–5080 salmon and 680–2520 trout smolts, respectively). A hypothetical maximum production of about 19 900 salmon smolts was predicted for the river at a density of 40, 0+ salmon 100 m^?2. Tracking adults during the spawning period identified optimal and potential reproductive areas.     

Validating timing of salmon smolt runs obtained by telemetry studies

Telemetry tags are increasingly used in management to monitor the migration timing of Atlantic salmon smolts (Salmo salar L.). It has been postulated that (1) effects from tagging and handling may alter migration behaviour, and (2) that the selection of fish during sampling is not representative of all migrating smolts, yielding bias in migration timing estimates. In the River Dale (Vestland, Norway), five groups of wild Atlantic salmon smolts (N = 385) were tagged in April–May and recaptured in a wolf trap. Migration timing was then compared to the untagged population. Migration timing differed between tagged (12 mm PIT) and untagged fish for 4/5 groups. Only fish tagged at the first time point did not have significantly different timing of migration from untagged counterparts. The relationship between length and the timing of migration was different for initial length and length at recapture; initial length suggested earlier migration of longer fish, but the extra time spent in the river prior to migrating for smolts that were initially smaller compensated for the size difference. The tagging protocol is crucial to obtaining representative migration timing results. Smolts should be tagged as early as possible and include the entire size distribution.