Using yield quantitative trait locus targeted SSR markers to study the relationship between genetic distance and yield heterosis in upland cotton (Gossypium hirsutum)

The objective of this study was to examine the relationship between heterosis and genetic distance in upland cotton (Gossypium hirsutum L.). Heterosis in the different environments was evaluated and the relationship between heterosis and genetic distance (GD) was determined based on SSR markers for yield quantitative trait loci (QTL). Yields of seed cotton and lint showed a linear relationship with mid‐parent heterosis (MPH) and better‐parent heterosis (BPH). The variation in heterosis for other traits and their correlation with GD may be due to environmental factors or the effort of QTLs tested in the present study may vary in different environments. The present findings provide a foundation for heterotic grouping of parental lines and breeding of new cotton hybrids with improved seed cotton yield. This study calls for more research with stable QTLs as well as advance molecular marker techniques may be used in predicting yield heterosis in a more precise and reliable manner.     

Genetic distance and its association with heterosis in peas

Summary The relationship between the genetic distance of parents and both the heterosis of F₁ hybrids and the variance of F₅ lines was investigated in 72 crosses of pea (Pisum sativum L.). The genetic distance between each pair of parents was estimated, using isozyme (GDi), morphological (GDm) or quantitative (GDq) markers and finally a combination of isozyme and morphological markers (GDi+m). GDm was poorly correlated with the other measures of genetic distance, which in turn were strongly correlated with each other. Genetic distance was moderately correlated with the level of heterosis for yield over midparent in the F₁ generation, with the highest correlation obtained from GDi+m. GD was not significantly correlated with heterosis for yield over the better or best parent but it was significantly correlated with all three measures of heterosis for pods per plant and hundred seed weight. There was no correlation between genetic distance and the level of heterosis for yield and total dry matter in the F₂ generation, but GDi, GDi+m and GDq were predictive for the level of inbreeding depression in grain yield and total dry matter. When parents were high in genetic distance, crosses produced highly transgressive segregants for basal branches per plant, hundred seed weight, harvest index and onset of flowering. Genetic distance between parents was thus a useful measure for predicting a portion of hybrid performance and also of the variance of derived inbred lines. It was concluded that when choosing parents for a cross, consideration should be given to their genetic distance as well as their overall adaptation and their yield. There is considerable potential for optimising choice of parental combinations in the development of improved pea cultivars.     

Genetic diversity of oilseed Brassica napus inbred lines based on sequence-related amplified polymorphism and its relation to hybrid performance

Significant heterosis for seed yield in oilseed rape has created interest in the development of hybrid cultivars. The DNA‐based marker protocol, sequence‐related amplified polymorphism (SRAP) was used to determine genetic diversity among oilseed rape maintainer and restorer lines. This measure was used in an attempt to establish an association between genetic distance and heterosis in hybrids for various agronomic traits. A total of 118 polymorphic loci were generated by 18 SRAP primer combinations. Based on the polymorphism generated by the markers, calculated similarity index values ranged from 0.46 to 0.97. Cluster analysis grouped 10 maintainer and 12 restorer lines into three groups, with the exception of two maintainer lines, PM5 and PM9, which fell outside these groups. The grouping of the lines was largely in agreement with the available pedigree data on their origin and agronomic performance. Analysis of variance among inbred lines and their resulting F₁ hybrids over two locations revealed significant differences for plant height, days to maturity and seed yield, but not for oil content. Substantial mid‐parent heterosis was observed only for seed yield, and ranged from 26% to 169%. All hybrids surpassed their respective inbred lines for this trait, except for a single cross combination of related lines. In general, crosses of lines located in different clusters yielded more than those from the same clusters. Regression analysis revealed a statistically significant relationship between the genetic distance of the parents and seed yield in their hybrid, and their derived mid‐parent and high‐parent heterosis. The correlation coefficient between genetic distance and yield (0.64) indicated a moderately strong relationship, so it is possible that some of the SRAP markers might be linked to quantitative trait loci for seed yield.     

Hybrid performance and AFLP- based genetic similarity in faba bean

Successful prediction of heterosis and performance of F₁-hybrids from the genetic similarity of their parents based on molecular markers has been reported in several crops and can be very helpful in hybrid breeding. The relationship between genetic similarities based on amplified fragment length polymorphism (AFLP) of 18 European faba bean lines and their hybrid performance and heterosis was investigated. Parental lines, 62 F₁-hybrids and their F₂-progenies were evaluated in field trials in four environments in Germany for seed yield, 1,000-seed weight and plant height. Results clearly demonstrated a stable superiority of the hybrids over their inbred parents and elite check cultivars, and showed a marked and varying amount of heterosis. Parental seed yield and F₂-hybrid yield were promising as predictors for F₁-hybrids. AFLP analysis of the 18 inbred lines using 26 EcoRI/MseI primer combinations resulted in 1202 polymorphic fragments. Cluster analysis based on genetic similarity estimates unambiguously identified pedigree-related inbred lines. No clear separation of the 18 inbred lines into subgroups was detected. Correlation coefficients between genetic similarity estimates and either heterosis or F₁-hybrid performance were small and not useful. Also correlations between specific genetic similarity and specific combining ability were too small for all traits to be of predictive value. Results showed that AFLP-based genetic similarities are not useful to predict the performance of hybrids or heterosis within the elite European faba bean gene pool.     

Genetic analysis of rapeseed self-incompatibility lines reveals significant heterosis of different patterns for yield and oil content traits

Self‐incompatibility is one of the most effective approaches to utilizing heterosis in oilseed rape around the world. To evaluate the heterosis of double low self‐incompatibility, the possibility of combining seed yield and oil content, and the genetic effects of parents on their hybrid progenies, a 2‐year field trial using a 3 × 22 NC II mating design was conducted during the 1999‐2001 growing seasons in Wuhan, China. Significant differences in seed yield per plant and seed oil content were observed among the F1 hybrids and between F1 progenies and their parents. However, the heterosis for seed yield per plant was much greater than that for seed oil content. Mid‐parent heterosis and high‐parent heterosis of seed yield per plant ranged from 5.50 to 64.11% and from –2.81 to 46.02%, while those of seed oil content ranged from –1.55 to 7.44% and –3.61 to 6.55%, respectively. Non‐additive genetic effects were a major mechanism that accounted for the yield heterosis in addition to additive effects. In contrast, seed oil content heterosis was mainly dependent on an additive genetic effect. General combining ability (GCA) determined the stability of hybrid cultivars. In hybrid breeding, parental materials might be selected by the sum of GCAs and variances of special combining abilities (SCAs) of female and male parents for traits affected by both additive and non‐additive effects, and by the sum of GCAs of two parents for traits controlled mainly by additive effects. Primary branches and their siliques were the most important yield traits.     

Heterosis in relation to genetic divergence in maize (Zea mays L.)

Summary The magnitude of heterosis was examined in relation to genetic divergence among 10 parents in a 10 × 10 diallel cross of maize. The 10 parents (varieties) were selected on the basis of multivariate analysis of quantitative characters using Mahalanobis' D²-statistic from a lot of 64 varieties of maize belonging to different geograshical regions of the world. The magnitude of heterosis for grain yield and its components was found to be higher with moderate (intermediate) parential diversity than with extreme ones. The results indicated that not only the genetic diversity but the high per se performance with respect to specific characters of interest should be taken into consideration also while selecting parents for hybridization.     

Genetic divergence in parental genotypes and its relation with heterosis, F1 performance and general combining ability (GCA) in opium poppy (Papaver somniferum L.)

Summary Genetic divergence in 110 population (20 parents and 90 F₁ hybrids) of opium poppy was studied by multivariate analysis. All the entries were grouped in 14 clusters. Out of 20 parents, ten were accumulated in one cluster and rest 10 distributed over seven clusters. Estimates of cluster distance showed that maximum intra-cluster distance was in -cluster IX (25.62) followed by cluster I (22.41), V (22.23) and IV (21.06). The inter cluster distances varied from 16.62 (between cluster XII and XIV) to 195.10 (between cluster IV and IX). The cluster analysis indicated substantial diversity among the parental genotypes, which had the potential to release considerable variation in their crosses. The first four principal components (PCs) with eigen values >1 accounted for 68% of variation among the population. The first and second components could account for 29 and 20% of the total morphological and alkaloidal variations, respectively. The PC1 was closely related to yield and yield related traits. The characters contributing greatest positive weight on PC1 were opium yield, plant height, stem diameter, capsule weight/plant and seed yield/plant. The possibilities of relationship between genetic divergence, F₁ performance, heterosis and GCA of parents have been explored.     

Implications of selecting improved strains of soybeans for dry-matter accumulation and grain yield

Summary Three maturity groups of soybeans (Glycine max L.) were used to investigate the relationship between dry-matter accumulation (DMA) and grain yield (GY), and the prospects for selection of high seed yielding strains among the existing soybean cultivars in a tropical environment. The positive and significant association between DMA and GY (r=0.888^***) indicated that selection for high DMA could give gains in GY. However, the higher harvest index (HI=37.5%) for the low seed yielding early maturing genotypes than the more vegetatively endowed and higher seed producing late maturity group, is an indication that excessive DMA could be disadvantageous. Total seed yield per land area for the three maturity groups of soybeans showed that the genotypes with high harvest index and low seed yield could be as good as those ones with high seed and dry-matter yields with low harvest index. The high coefficient of variation which ranged between 18.1 and 59.8% and the heritability estimations which also ranged from 34.4 to 82.2% are indicative of the presence of substantial genetic diversity and there are good prospects for the improvement of the crop through selection.     

Genetic diversity in bread wheat, as revealed by coefficient of parentage and molecular markers, and its relationship to hybrid performance

Variable results have been obtained in different crop species using geneticsimilarity (GS) estimates based on molecular markers and coefficient ofparentage (COP) to predict heterosis.This study was designed: i) to assess the level of GS among 40 breadwheat (Triticum aestivum L.) cultivars selected in Central and SouthEurope; ii) to compare GS with COP; iii) to correlate the estimates ofparental diversity with the heterotic effects detected on 149 F₁hybrids obtained by crossing the 40 cultivars according to three matingdesigns.The parental cultivars and the F₁ hybrids were grown in severallocations at normal seed density. Significant heterotic effects were detectedfor grain yield and other traits including quality attributes. The parentalcultivars were assayed for DNA polymorphisms using two classes ofmarkers: 338 RFLP and 200 AFLP^® bands were scored. GS estimates werecomputed considering each molecular marker set separately (GS_RFLP,GS_AFLP) and together (GS_TOT). Ample differentiation amongthe parental cultivars was detected with the two marker sets. Although theaverage GS_TOT (0.43) was higher than COP (0.10), the twomeasurements were significantly correlated (r = 0.36, p < 0.01).Correlations between the different estimates of genetic diversity andF₁ performance or mid parent heterosis for grain yield and otherrelated traits were in general low although statistically significant.A more detailed analysis was conducted on 28 F₁ hybridsproduced in a half diallel cross of eight parental cultivars characterized byhigh heterotic effects for grain yield. The GS estimates based on RFLP,AFLP^® markers and also on RAPD were partitioned into general andspecific components. Correlations with general and specific combiningability effects for the measured traits were in several cases statisticallysignificant but too low to be predictive and therefore exploitable in practicalbreeding.     

Genetic divergence among a non-restorer collection of sorghum (Sorghum bicolor (L.) Moench) and its relationship with heterosis

Summary A genetic diversity analysis in a collection of 171 non-restorer lines of sorghum (Sorghum bicolor (L.) Moench) using D² technique and canonical variate analysis indicated that considerable variation in grain yield has been added to the collection by the addition of lines derived from random mating populations. The efficiency of D² and canonical variate techniques in distinguishing extremely diverse genotypes was confirmed. However, the two techniques showed weak correspondence in their clusters. The F₁ hybrids of 15 diverse lines exhibited no relationship between heterosis or per se performance of crosses and diversity in their parents. Therefore, traditional plant breeding methods are being advocated.Approved by ICRISAT as Journal Article no. 435.     

Genetic variation for resistance to low-temperature photoinhibition of photosynthesis in maize (Zea mays L.)

Summary In the partially allogamous faba bean, yield and yield stability can be improved significantly by heterozygosity and heterogeneity. The commercial production of hybrid varieties for the full exploitation of heterosis is still unfeasible. Hence, the breeding of synthetic varieties has repeatedly been recommended. The present study aimed at investigating whether and to what extent effects due to heterozygosity and heterogeneity occur in such varieties, particularly in relation to Syn-generation. A sample of 36 inbred lines (Vicia faba L. minor) was used to generate several entries of different population structure, e.g. blends of inbred lines (=Syn-0), experimental synthetics of generations Syn-1 to Syn-4 and polycross progenies. In 1986 to 1991 these entries were evaluated together with their parental lines grown in pure stands in six series of multi-locational field trials in West Germany. The yield of the synthetics increased with successive Syn-generations and asymptotically approached its maximum by as early as generations Syn-2 or Syn-3. The yield increase was mainly caused by heterozygosity. In two synthetics the yield increase corresponded to about one-half to two-thirds of the mid-parent heterosis. Effects due to heterogeneity were small and mostly non-significant. In one out of three expriments significant effects due to seed source were observed which, however, did not alter the yield increase with successive Syn-generations. Hence, Syn-generations Syn-2 or Syn-3 may be sold to the farmer.     

Genetic effects on biomass yield in interspecific hybrids between Brassica napus and B. rapa

This study was conducted to estimate the genetic effects on biomass yield in the interspecific hybrids between Brassica napus and B. rapa, and to evaluate the relationship between parental genetic diversity and its effect on biomass yield of interspecific hybrids. Six cultivars and lines of oilseed B. napus and 20 cultivars of oilseed B. rapa from different regions of the world were chosen to produce interspecific hybrids using NC design II. Obvious genetic differences between B. rapa and B. napus were detected by RFLP. In addition, Chinese B. rapa and European B. rapa were shown genetically differences. Plant biomass yield from these interspecific hybrids were measured at the end of flowering period. Significant differences were detected among general combining ability (GCA) effects over two years and specific combining ability (SCA) effects differences were detected in 2000. The ratios of mean squares, (σ² _GCA(f) + σ² _GCA(m)) / (σ² _GCA(f) + σ² _GCA(m) + σ² _SCA), were 89% and 88% in 1999 and 2000, respectively. This indicates that both additive effects and non-additive effects contributed to the biomass yield of interspecific hybrids and the former played more important role. Some European B. rapa had significant negative GCA effects while many of Chinese B. rapa had significant positive GCA effects, indicating that Chinese B. rapa may be a valuable source for transferring favorable genes of biomass yield to B. napus. Significant positive correlation between parental genetic distance and biomass yield of interspecific hybrids implies that larger genetic distance results in higher biomass yield for the interspecific hybrids. A way to utilize interspecific heterosis for seed yield was discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

水稻超高产育种的实践与思考

20世纪50年代末广东的籼稻矮化育种，60年代IRRI的“绿色革命”和70年代我国三系杂交籼稻的培育成功，都使水稻每公顷产量成吨增加。前两者高产育种的成功主要是利用了矮秆基因，后者则是利用了杂种优势。在尔后的10～20年里，有利基因的发掘利用和育种途径没有很大的突破，单产徘徊不前。笔者认为，利用籼粳亚种间有利性状的     

显性无腺体与隐性无腺体陆地棉品种间杂种二代利用研究

利用４个隐性低酚棉品系为母本，５个显性无腺体品系为父本，按不完全双列杂交（ＮＣⅡ）设计配制２０个组合，利用亲本、Ｆ１和Ｆ２材料采用ＡＤＡＡ模型研究表明，衣分以加性效应为主，其余产量及产量构成因素以显性遗传效应为主。子棉产量和铃重有较低的上位遗传效应。纤维品质性状中，绒长与整齐度以显性遗传效应为主，绒长还存在少量上位效应；比强度与伸长率仅存在显著的加性遗传效应，麦克隆值以加性遗传效应为主。Ｆ１皮棉产量、第一次收花率、单株铃数、铃重和衣分的群体超亲优势平均值分别为：２７．９％、１８．７％、１６．２％、９．７％和１％，Ｆ２分别为：１０．８％、５．１％、４．５％、４．６％和－１．２％。Ｆ１绒长的群体平均优势为２．５％，比强度和伸长率为－１．８和０．８％，麦克隆值和整齐度分别为－０．２％和－２．７％。Ｆ２绒长略呈下降趋势，比强度、伸长率和麦克隆值Ｆ２与Ｆ１相近，整齐度Ｆ２略优于Ｆ１。表明了显性无腺体基因的杂种优势利用前景广阔。     

Heterosis for yield and related characters in pea

Summary To determine the levels of heterosis in F1 hybrids, four current pea (Pisum sativum L.) cultivars from southern Australia were used as female parents and crossed with 18 introduced genotypes. The 22 parents, 72 F1 hybrids and, depending on the environment, either 54 or all 72 F2 families were grown in replicated plots in four environments. Grain yield, total dry matter, harvest index, branches per plant, pods per plant, seeds per pod, hundred seed weight, plant height, onset of flowering and flowering periods were evaluated. For both the F1 and F2 generation, heterosis was determined as the superiority over the mid-parent and also over the better parent. In addition, the superiority over the best commercial cultivar was calculated. Most hybrids were higher yielding than their mid-parent but were less stable in yield across environments. Four F1 hybrids were significantly higher yielding than the best parent, by up to 26%. There were significant correlations between F1 hybrid and mid-parent value for plant height, pods per plant and hundred seed weight but not for yield. Overall, grain yield heterosis was mainly due to more pods per plant in the hybrids. The level of heterosis for yield in a poor yielding environment was higher than that in a high yielding one. Both additive and non-additive gene effects were important in the expression of all studied traits. The average level of heterosis for grain yield and total dry matter in the F2 population was half of that in F1 hybrids. The low level of inbreeding depression from the F1 to the F2 generation suggested that epistatic gene action also contributed to the expression of grain yield. Some F2 populations maintained the high yield levels of the corresponding F1 hybrids.     

Variation in Illinois bundleflower (Desmanthus illinoensis (Michaux) MacMillan): A potential perennial grain legume

Illinois bundleflower, Desmanthus illinoensis (Michaux) MacMillan, is an herbaceous perennial legume native to the central and southeastern USA. It has been identified as a potential perennial grain legume. To describe variation among natural populations for agriculturally desirable characteristics, 141 accessions of D. illinoensis and one of D. leptolobus were evaluated in common garden plantings established in 1988 and 1990. Characteristics showing diversity among populations included seed yield, plant height, growth habit, days to maturity, 100 seed weight, and shatter resistance. Eight characteristics were analyzed by principal components and cluster analysis. The resulting four clusters accounted for 56% of the variation among accessions. One cluster was distinctive in having plants with vigorous, prostrate first year growth, poor winter hardiness, and large seed. Three accessions also had indehiscent legumes useful for breeding shatter resistance. There appears to be sufficient variation to support genetic improvement of agricultural characteristics of Illinois bundleflower. This revised version was published online in August 2006 with corrections to the Cover Date.     

Combining ability under drought stress relative to SSR diversity in common wheat

Eight-parental diallel cross and SSR molecular markers were used to determine the combining ability of common wheat lines grown under well-watered (WW) and water-stress (WS) conditions. Analysis of variance of yield indicated highly significant differences among the progenies. General combining ability (GCA) determined most of the differences among the crosses. Specific combing ability (SCA) was also significant but less important. The estimates of GCA effects indicated that one line was the best general combiner for grain yield under drought. Neis genetic distance, measured using SSR markers, differed from 0.20 to 0.48 among the eight genotypes. The correlation of Neis genetic distance with SCA for grain yield and heterosis ranged from 0.4 to 0.5. These results indicate that the level of SCA and heterosis depends on the level of genetic diversity between the wheat genotypes examined. Microsatellite markers were effective in predicting the mean and the variance of SCA in various cultivars combinations. However, selection of crosses solely on microsatellite data would miss superior combinations.     

Comparison of phenotypic and molecular marker-based classifications of hard red winter wheat cultivars

Genetic diversity is the basis for successful crop improvement and can be estimated by different methods. The objectives of this study were to estimate the genetic diversity of 30 ancestral to modern hard red winter wheat (Triticum aestivum L.) cultivars adapted to the Northern Great Plains using pedigree information, morphological traits (agronomic measurements from six environments), end-use quality traits (micro-quality assays on 50 g grain or milled flour samples for the six environments), and molecular markers (seed storage proteins separated using SDS-PAGE, 51 SSRs, and 23 SRAP DNA markers), and to determine the relationships of genetic distance estimates obtained from these methods. Relationships among diversity estimates were determined using simple (Pearson) and rank (Spearman) correlation coefficients between distance estimates and by clustering cultivars using genetic-distances for different traits. All methods found a wide range in genetic diversity. The genetic distance estimates based on pedigree had the highest values due to possible over-estimation arising from model assumptions. The genetic diversity estimates based on seed storage protein were lowest because they were the major determinants of end-use quality, which is a highly selected trait. In general, the diversity estimates from each of the methods were positively correlated at a low level with the exceptions of SRAP diversity estimates being independent of morphologic traits (simple correlation), SDS-PAGE, and SSR diversity estimates (rank correlation). However, SSR markers, thought to be among the most efficient markers for estimating genetic diversity, were most highly correlated with seed storage proteins. The procedures used to accurately estimate genetic diversity will depend largely upon the tools available to the researcher and their application to the breeding scheme.     

光子陆地棉种质资源主要性状的遗传评价

以102份光子陆地棉材料为母本,分别与遗传标准系TM-1杂交,获得102个F₁群体。采用随机区组设计,设置3个重复,对光子陆地棉材料主要性状进行遗传评价。结果表明,调查的11个性状表型差异均较大,材料间产量性状(株高、果枝数、铃数、铃重、衣分和子指)差异大于纤维品质性状(纤维长度、纤维强度、马克隆值、整齐度和伸长率),特别是衣分、铃数等性状差异更明显; 除果枝数、马克隆值、伸长率以外,光子亲本群体其他性状的平均值都小于F₁群体。而亲本群体所有性状的变异系数均大于F₁,不同光子材料的杂种优势有很大差别,中亲优势和超亲优势也有很大的差别,有些种质某些性状的中亲、超亲优势为负值,其后代性状表现劣势; 纤维品质性状的中亲、超亲优势与毛子程度均呈负相关,而产量性状的中亲、超亲优势与毛子程度均呈正相关,说明可利用光子材料杂种优势改良纤维品质,而其后代产量性状的杂种优势利用受到限制; SSR分子标记遗传相似系数与各个性状的中亲、超亲优势的相关都不显著,说明在光子材料的育种中,杂种优势是不能通过亲本之间的遗传背景相似程度来预测的。     

Prediction of heterosis using QTLs for yield traits in rapeseed (Brassica napus L.)

Three double low (erucic acid and glucosinolates) self-incompatible lines and 22 varieties from different origins were selected to produce 66 hybrids according to a NC II mating design. Field experiments for identification of hybrid performance and heterosis were conducted in two successive rapeseed growing seasons in Wuhan, China. After heterosis identifications, SI-1300 and Eagle were chosen to construct an F₂ segregating population. One hundred and eighty four F_2:3 lines were planted at Wuhan and Jingmen to test yield traits. F₂ plants and the 25 parents were analyzed using simultaneously AFLP (amplified fragment length polymorphism) and SSR (simple sequence repeat) markers. A total of 270 and 718 polymorphic loci were detected in the F₂ population and among the 25 parental lines, respectively. Of the 718 polymorphic loci, 178 were significantly correlated to yield traits. With the use of one-way ANOVA, 84 common QTLs were detected for 12 traits at two trial locations. Although the genetic distances based on general/specific heterozygosities and single-locus QTLs showed significant correlations with hybrid performance and heterosis for some yield traits, the determination coefficients were low. The results suggested that neither heterozygosities nor QTLs for yield traits were suitable to predict hybrid performance and heterosis in Brassica napus.