Resistant starch in cereals: Exploiting genetic engineering and genetic variation

Some of the starch consumed by humans is not digested in the small intestine. Such starch, known as resistant starch, is fermented in the large intestine and leads to the production of short chain fatty acids. Increased consumption of resistant starch is associated with improved cardio-vascular health. A high proportion of amylose in the starch consumed is correlated with increased resistant starch but other unknown aspects of starch structure may also influence the digestibility of starch. Detailed investigation of the starch biosynthetic pathway has revealed that reducing the activity of specific isoforms of branching enzymes and starch synthases can lead to increased amylose. Methods to alter the expression of and detect mutations in targeted genes involved are discussed.     

Measurement of genetic and environmental variation in barley (Hordeum vulgare) grain hardness

In this study, we assessed a broad range of barley breeding lines and commercial varieties by three hardness methods (two particle size methods and one crush resistance method (SKCS—Single-Kernel Characterization System), grown at multiple sites to see if there was variation in barley hardness and if that variation was genetic or environmentally controlled. We also developed near-infrared reflectance (NIR) calibrations for these three hardness methods to ascertain if NIR technology was suitable for rapid screening of breeding lines or specific populations. In addition, we used this data to identify genetic regions that may be associated with hardness. There were significant (p<0.05) genetic effects for the three hardness methods. There were also environmental effects, possibly linked to the effect of protein on hardness, i.e. increasing protein resulted in harder grain. Heritability values were calculated at >85% for all methods. The NIR calibrations, with R² values of >90%, had Standard Error of Prediction values of 0.90, 72 and 4.0, respectively, for the three hardness methods. These equations were used to predict hardness values of a mapping population which resulted in genetic markers being identified on all chromosomes but chromosomes 2H, 3H, 5H, 6H and 7H had markers with significant LOD scores. The two regions on 5H were on the distal end of both the long and short arms. The region that showed significant LOD score was on the long arm. However, the region on the short arm associated with the hardness (hordoindoline) genes did not have significant LOD scores. The results indicate that barley hardness is influenced by both genotype and environment and that the trait is heritable, which would allow breeders to develop very hard or soft varieties if required. In addition, NIR was shown to be a reliable tool for screening for hardness. While the data set used in this study has a relatively low variation in hardness, the tools developed could be applied to breeding populations that have large variation in barley grain hardness.     

Genetic variation and environmental effects on agronomical and commercial quality traits in the main European market classes of dry bean

Repeated testing of diverse commercial classes of beans over time and space and selection for a minimal degree of genotype × environment interaction (GEI) is a common feature of all plant breeding programs. The GEI effect limits the accuracy of yield estimates and complicates the identification of specific genotypes suited for specific environments. The purpose of this work was to study GEI on yield of the main European dry bean market classes by the site regression (SREG) and multiple trait data by genotype–trait (GT) methods, which graphically displayed the interrelationships among traits and facilitated visual comparison of genotypes. Sixty-seven genotypes of common bean, grown in three different sites in northwestern Spain during the 2001 and 2002 growing seasons, were evaluated for yield, two phenological and four commercial seed traits. Interactions between GEI and yield were established using a SREG analysis model to generate a genotype–GEI (GGEI) biplot. The GGEI biplot revealed GEI as a major source of bean yield variation and the different growing sites served to discriminate among the genotypes. This method provided information on the three growing sites: Lugo was identified as the location that best represents the target environment for seed yield; Pontevedra was the location showing the greatest yield stability and León separated the genotypes clearly although as this was not consistent over other sites, León was not representative of an average environment. Each site was represented by a group of genotypes, which showed a superior performance. Large-seed genotypes of the favada market class were best suited to the Lugo site. Commercial seed traits (seed coat fraction, water absorption, crude protein content and seed weight) and days to maturity showed wide variation, as indicated by the relative length of their vectors in the GT plot. Genotypes with the highest yield showed the highest protein content and the poorest seed coat quality and were the latest to flower, while the genotypes that exhibited a high seed coat fraction had the poorest water absorption capacity. The results presented in this work permitted the identification of optimal adapted dry bean genotypes for each bean producing area. These high-yielding genotypes with a good commercial seed quality merit special attention as they could have potential applications for the development of breeding strategies.     

Molecular genetic mapping of NIR spectra variation

A novel analytical approach was used to identify associations between Near-Infrared (NIR) spectral fingerprints and segments of wheat (Triticum aestivum L.) chromosomes indicating the location of genetic factors contributing to variation in NIR spectra. To identify the genetic factors, environmental and experimental variability were removed from the spectra using spatial mixed models. These corrected spectra were combined with the molecular genetic analysis of wheat lines from a structured population derived from a Carnamah by WAWHT2046 doubled haploid set of progeny. The association of chromosome segments with specific NIR wavelengths was established using all-subset regression and canonical correlation methodology. These improved processes for analysing NIR spectra were validated using 161 lines in breeding trials analysed over a period of 3 years across 40 sites.     

Genetic and environmental variation in the diastatic power of australian barley

Variation in the diastatic power of Australian barley, and the relationships between diastatic power and the starch-degrading enzymes contributing to diastatic power, were investigated in 11 cultivars of barley grown at six diverse locations in Australia. Diastatic power varied with genotype and location, with the levels ranging from 3·1 to 16·5 U/kg. For alpha-amylase activity, levels across cultivar and location ranged from 52 to 214 U/g, for beta-amylase activity they ranged from 201 to 1550 U/g; and, for limit dextrinase activity, they ranged from 56 to 636 U/kg. Alpha-amylase (r = 0·64) and beta-amylase (r=0·77) activities were correlated more strongly with diastatic power than was limit dextrinase (r=0·37). Grain nitrogen content was correlated positively with diastatic power (r=0·71), largely because of the relationship between nitrogen content and beta-amylase activity (r=0·82). High grain nitrogen contents were also associated with small grain sizes (r=−0·76) and low hot-water extracts (r=−0·75). The levels of alpha-amylase activity were correlated more closely with limit dextrinase activity (r=0·65) than with beta-amylase activity (r=0·28). The results indicate the need to select barley cultivars separately for alpha-amylase and beta-amylase activities to achieve high levels of diastatic power.     

Global sources of pepper genetic resources against arthropods, nematodes and pathogens

Today India is the main producer of peppers especially the hot peppers, albeit mostly for domestic use. The thrips and mites, and the virus diseases transmitted by them along with fungal diseases like fruit rot, powdery mildew, bacterial wilt and leaf spots are the limiting factors in pepper productivity. The solution for managing these pests on a sustained basis exists in adopting eco-friendly approaches like using resistant cultivars. Fortunately huge natural genetic diversity exists in pepper and therefore, essential research efforts in finding out resistant sources and their utilization have been by and large dynamic and successful. Despite continuous scientific efforts there is a dire need for new cultivars with resistant traits for various pests suitable to varied climatic conditions, consumption and quality preferences all over the world. Efforts need to be intensified to find out useful genetic material and to introduce genes of resistance against insects, fungal and virus diseases into commercial cultivars. Genetic resources that have been used intensively in pepper breeding are for developing sweet peppers, hot peppers, bell peppers in various shapes, sizes and colors. Germplasm repositories at the World Vegetable Research Center (AVRDC) and United States Department of Agriculture (USDA) do possess number of genotypes resistant to insect pests, nematode, fungi, bacteria and virus diseases. At AVRDC resistant genotypes originating from several pepper growing countries to most virus diseases like Tobacco mosaic virus, Cucumber mosaic virus, Pepper veinal mottle virus, Chilli veinal mottle virus, Peanut bud necrosis virus etc., were identified from its rich pepper diversity. Exploitation of rich genetic diversity resulted in the development of new cultivars encompassing resistance to various pests and good agronomical traits. This has eventually resulted in meeting the demanding situations of diverse domestic as well as global production requirements. The chile database (Chile Database, 2010) highlights the exemplary utilization of germplasm and development of large number of cultivars and hybrids resistant to most diseases and nematodes around the world. This paper also depicts information on Indian sources of resistance to thrips, mites, leaf curl complex, nematodes and diseases, while presenting the scope for exploitation of diversity available in the Indian National Gene Bank and other repositories all over the world. An attempt is also made to identify the gaps in the genetic diversity and cultivars against the biotic constraints and the augmentation efforts required to be initiated toward enrichment of the gene pool for domestic as well as global use.     

Inter- and intra-population genetic variation for leaf:stem ratio in landraces and varieties of lucerne

A comparison was made of landrace vs. variety inter‐ and intra‐population genetic variation for leaf:stem ratio in lucerne and investigated its relationship with forage yield and other characters. Very early‐flowering genotypes were excluded from the assessment to limit the impact of maturity stage on the variation in leaf:stem ratio. The evaluation was performed on a summer harvest of 390 genotypes belonging to ten landraces from northern Italy and to six well‐performing varieties, and on nineteen clones of a single genotype which were used to estimate the environmental variance. Landrace and variety groups did not differ in mean leaf:stem ratio. Variation for this trait was significant among varieties (P < 0·05) but not among landraces. Within‐population variation was significant for both germplasm groups (P < 0·01), being somewhat larger in landraces. The estimated within‐population variance component largely exceeded the among‐population variance component within varieties. Higher leaf:stem ratios were mainly associated with shorter and thinner main stems in genotypes and populations, and showed a modest inverse correlation with forage yield. The results highlight the importance of landrace germplasm and the paramount importance of selection within populations to identify parent material with a high leaf:stem ratio.     

Combined effect of genetic and environmental factors on the accumulation of proteins in the wheat grain and their relationship to bread-making quality

Bread-making quality of wheat flour is largely determined by the accumulation, concentration and composition of the proteins in the grain, which are influenced by genetic (G) and environment (E) variation and their interactions. We have therefore evaluated the importance of G and E factors and their interactions in determining the accumulation and composition of the proteins in the wheat grain. The cultivar determined development time (CDDT), together with the amount and timing of N application, played a significant role in determining the accumulation and final composition of the wheat grain proteins, explaining 21–59% of the variation. At low temperature, N application both at spike formation and at anthesis explained the highest proportion of variation (36%) in the percentage of sodium dodecyl sulphate (SDS) unextractable polymers in the total amount of polymers (% UPP), while at high temperature CDDT contributed most to the variation in % UPP (20%). The largest contributor to variation in the amount of total SDS extractable proteins (TOTE) was N application at anthesis, both at low and high temperatures (12% and 36%, respectively). Thus, the climate should be considered in recommendations for improving the protein quality and thereby the bread-making quality of wheat.     

Genotypic and environmental variation in water soluble carbohydrate content of silage maize

The concentration of water soluble carbohydrates (WSC) is a main determinant of the ensiling potential of forages and the aerobic stability of silages. The aims of the present study were to assess the impact of genotype on the seasonal changes of WSC concentration, to adapt and calibrate the FONSCH (FOrage NonStructural CarboHydrates) model – originally developed for forage grasses – for silage maize, and finally to conduct a long-term simulation study for quantifying weather-related variability of WSC content. A 3-year field experiment (2001–2003) was conducted in northern Germany to evaluate differences in WSC content among commercial silage maize varieties and to provide calibration data for modelling. Eight varieties covering three maturity groups (early, mid-early and mid-late) were investigated. On six dates throughout the vegetation period the plants were harvested, separated into ear and stover, and freeze–dried for subsequent determination of WSC. Ear, stover, and whole crop WSC content was influenced by genotype and environmental conditions. Genotypic effects were most pronounced in the early grain filling period. At silage maturity, an effect of variety on whole crop WSC content was found in the mid-early group only, accounting for a difference of 44.8 g WSC kg⁻¹ DM. FONSCH model calibration showed good agreement between observed and calculated WSC contents, with RMSE below 27.6 g WSC kg⁻¹ DM and r² above 0.84. Parameter estimates revealed a substantial influence of temperature and solar radiation on WSC content, while plant available soil water had minimal impact. Successful model validation with an independent data set allowed us to perform a 30-year simulation study, where variation among varieties and years of up to 68.8 and 186.5 g WSC kg⁻¹ DM, respectively, demonstrated a larger impact of environmental conditions compared to genotype.     

湖南省生态环境质量研究

以生物丰度指数、植被覆盖指数、水网密度指数、土地退化指数、污染负荷指数为评价因子,运用生态环境质量指数(EQI)的评价体系,对湖南省生态环境进行了分析与评价.结果表明,湖南省生态环境质量在全国范围内属于优的区域,全省104个县级以上区域中,有37个市、县评价为优,占全省的35.58%,67个县生态环境质量评价等级为良,占全省的64.42%.指出了湖南省生态环境存在的主要问题.     

Yearly variation in maize silage fermentation and nutritive quality

A significant effect of year on maize nutritive value has been reported in many studies; however, the direct effect of year on both nutritive values and fermentation traits of maize silage has not been directly investigated. During a 7‐year period (2006–2012), we investigated the following variables of 597 maize silages commercially produced in bunker silos on farms in the Czech Republic: dry‐matter content (DM), crude protein (CP), starch, amylase‐treated neutral detergent fibre (aNDF), acid detergent fibre (ADF) and net energy lactation (NEL), as well as fermentation traits such as pH, contents of lactic acid (LA), acetic acid (AA), butyric acid (BA) and the ratio between LA and volatile fatty acids. The effect of year and DM explained 16 and 30% of the variability in nutritive and fermentation traits respectively. Although a common silage DM content was used for each year, the climatic effect of year significantly changed almost all tested variables, but particularly aNDF, ADF, starch, AA and BA. The year contribution to trait variability effect was as much as two times higher for fermentation traits (12·6%) as for nutritive value (6·1%). Temperature–precipitation relationships associated with achieved maize yield were considered as factors explaining the year effect. Temperature and precipitation averaged over the full vegetation period had low relevance to nutritive and fermentation traits. This study reveals the importance of year‐to‐year variation in silage nutritive value and fermentation, which could be useful for understanding the contribution of year to these changes in both field experiments and national assessments.     

Both genetic and environmental conditions affect wheat grain texture: Consequences for grain fractionation and flour properties

This review summarizes the results of studies on near-isogenic common wheat lines differing in the Pinb-D1 allele encoding puroindoline B or durum wheat into which both wild-type puroindoline genes were introduced. The material was grown in different environments to evaluate the respective effect of puroindoline genes or of the environmental factors on grain characteristics and milling behavior.Environmental conditions were found to impact grain porosity (=1/vitreousness) and the presence of both wild-type puroindoline genes was found to reduce the vitreousness threshold under 60%. Hardness measurements with single kernel characterization system were found to differ from near-infrared reflectance spectroscopy analysis and were linearly related to vitreousness but differently depending on the puroindoline allele carried.Puroindoline genes were found to play a major role in the grain porosity, breaking energy, size of generated particles and in the concentration of phytic acid and damaged starch into flour whereas vitreousness introduced variations in the ability to break and in the level of damaged starch.Finally, the highest flour yield is obtained from either vitreous common wheat grains carrying the wild-type puroindoline alleles or carrying mutated alleles and displaying low vitreousness. This result was confirmed using common French wheat cultivars whose puroindoline genes were identified.     

Influence of allelic prolamin variation and localities on durum wheat quality

Thirty-seven varieties of a Mediterranean durum wheat collection grown in Tunisia and Spain were analysed for their allelic composition in prolamins, as well as their protein concentration, sodium dodecyl sulphate sedimentation (SDSS) test and mixograph parameters. Genotype was a greater source of variation in all measurements than locality. Uncommon high and low molecular glutenin subunits (HMW-GS and LMW-GS) were found (V and 2•• subunits at Glu-A1, 13 + 16 at Glu-B1, 5* subunit and ax allele at Glu-A3). The rare combinations 2 + 4+14 + 18 and 8 + 9+13 + 16+18 subunits at the Glu-B3 locus were found. Glu-A3ax had a positive influence on SDSS and mixograph parameters. Of all the prolamins, those that have the B-LMW-GS composition aaa (for Glu-A3, Glu-B3 and Glu-B2 loci, respectively), when associated with the Glu-A1c and Glu-B1d gave the best semolina quality. By contrast, semolina quality is poor when this same composition is associated with the Glu-A1c and Glu-B1e and even poorer when associated with the Glu-A1c and Glu-B1f. In addition, the cultivars with B-LMW-GS allelic composition aab (for Glu-A3, Glu-B3 and Glu-B2 loci, respectively), when associated with the Glu-A1c and Glu-B1d, gave high quality, whereas when associated with the Glu-A1c and Glu-B1e or with Glu-A1o and Glu-B1f, the quality was very poor.     

不同碳水化合物源对饲料油菜青贮品质的影响

为油菜多功能开发利用、促进种养结合,以饲料油菜华油杂62为材料,添加不同来源碳水化合物进行青贮比较试验,研究高水分饲料油菜青贮技术.试验分为5组,分别将20％的各碳水化合物原料(麸皮、玉米粉、米糠、玉米淀粉)与高水分饲料油菜混合青贮,青贮45 d后进行感官评定并测定营养成分、pH、有机酸含量等.结果表明,添加各碳水化合...     

Effect of genetic variation on phenolic acid and policosanol contents of Pegaso wheat lines

Total phenolic acid and policosanol contents and compositions of bran from an Italian bread wheat variety Pegaso and its 11 near-isogenic lines were measured. The near-isogenic wheat lines differed at one or more loci coding for storage proteins. The genetic variation included deletions, additions and/or combinations of variations. Almost 95% or more of phenolic acids were in the bound form. Ferulic acid was the predominant bound phenolic acid present in wheat bran samples. Other phenolic acids were p-coumaric, vanillic and syringic acids. Tetracosanol, docosanol, hexacosanol, octacosanol, tricosanol and heneicosanol were found as major policosanol compounds in their decreasing order. Highly significant genotypic differences were observed in total phenolic acid and policosanol concentrations. None of the genetic lines had higher phenolic acid contents than the parent line Pegaso, whereas some of the lines had more policosanol levels. In general, both total phenolic acid composition and contents were higher with genetic lines that varied at Glu-1 loci with 2+Dy high molecular weight glutenin subunit (HMW-GS) (Pegaso 184), variation at Gli-D2 loci (Pegaso 219) and single null A1 (variation at Gli-1/Glu-3 loci; Pegaso 30). Highest total policosanol content was observed with the double null at Glu-A1/Glu-D1 loci (Pegaso 236). These findings may lead to new opportunities for wheat breeders and eventually commercial wheat growers to promote the production of wheat with enhanced levels of health beneficial compounds.     

Evaluation of biological quality of protein concentrates from different vegetable protein sources

The quality of protein concentrates coming from conventional and non-conventional vegetable sources was evaluated. The protein quality was assessed by the multi-point assay RPV. Whole body weight gain, weight gain corrected for the gastrointestinal content (G.I.), total body nitrogen and total liver nitrogen were used as response parameters. The various protein sources ranked differently depending upon the response parameters utilized, but a great majority of the sources had a good nutritional value (over 0.5). The gastrointestinal content is one of the principal factors responsible for the differences found. However, even after correcting for the G.I. content, some differences remained. For the various protein sources, the nitrogen deposition in the liver correlates satisfactorily with the whole body nitrogen deposition, if in the calculation of the regression line, the data for faba bean and tobacco were omitted (respectivelyr=0.610 andr=0.925). On the whole, these data indicate that most plant protein concentrates in suitable combinations and properly processed, may become a promising alternative to animal proteins.     

Adaptive dynamic resource allocation in annual eusocial insects: environmental variation will not necessarily promote graded control

Background  

According to the classical model of Macevicz and Oster, annual eusocial insects should show a clear dichotomous "bang-bang" strategy of resource allocation; colony fitness is maximised when a period of pure colony growth (exclusive production of workers) is followed by a single reproductive period characterised by the exclusive production of sexuals. However, in several species graded investment strategies with a simultaneous production of workers and sexuals have been observed. Such deviations from the "bang-bang" strategy are usually interpreted as an adaptive (bet-hedging) response to environmental fluctuations such as variation in season length or food availability.