Identification of molecular markers associated with sweet potato resistance to sweet potato virus disease in Kenya

Sweet potato virus disease (SPVD), a result of the co-infection of whitefly transmitted Sweet potato chlorotic stunt virus (genus Crinivirus, family Closteroviridae) and the aphid transmitted Sweet potato feathery mottle virus (genus Potyvirus, family Potyviridae), is the most destructive disease of sweet potato in East Africa. A study was conducted to establish if genotypes identified as resistant or susceptible to SPVD in Kenya could be distinguished using molecular markers. A total of 47 unrelated sweet potato genotypes were selected from germplasm collections and classified into two phenotypic groups as resistant or susceptible to SPVD. Genotype selection was based on disease severity or days to symptom development in plants following graft inoculation. Amplified fragment length polymorphism (AFLP) marker profiles were generated for each individual and used in association studies to identify markers suitable for classifying the two pre-defined phenotypic groups. Analysis of molecular variance showed significant (P < 0.002) variation between the two groups using 206 polymorphic AFLP markers. Discriminant analysis and logistic regression statistical methods were used to select informative markers, and to develop models that would classify the two phenotypic groups. A training set of 30 genotypes consisting of 15 resistant and 15 susceptible were used to develop classification models. The remaining 17 genotypes were used as a test set. Four markers, which gave 100% correct classification of the training set and 94% correct classification of the test set, were selected by both statistical methods.     

Diallel analysis of sooty stripe resistance in sorghum

Sooty stripe [Ramulispora sorghi (Ellis and Everhart) Olive and Lefebre] is a widespread foliar disease of sorghum [Sorghum bicolor (L.) Moench] in West Africa, responsible for grain yield losses up to 46%. We studied the inheritance of sooty stripe resistance in a 9 × 9 sorghum F₂-population diallel grown together with parent lines and checks in1996 under natural disease pressure at two locations in Mali. The percentage of infected leaf area was determined twice over a two-week interval during the season. At the second evaluation, the mean sooty stripe severity amounted to 13% infected leaf area at Samanko and 12% at Cinzana. The frequency distribution of the entries was approximately normal for the mean disease severity, averaged across assessment dates and locations, pointing to the involvement of multiple genes. With the data combined across the two locations, genetic differences among lines and among F₂ populations were highly significant. Genotype × location interaction variances were also significant but much smaller than the genetic variances. Broad-sense heritability estimates were 0.92 for lines and 0.94 for the F₂ populations, for the mean percentage infected leaf area across the two assessment dates. General combining ability effects (GCA) determined most of the differences among the F₂ populations. Specific combining ability effects (SCA), and the interactions of GCA or SCA with locations were also significant but less important. Line performance per se was highly correlated with GCA. Because of the high heritability and predominance of additive effects, prospects are good for the genetic improvement of resistance to sooty stripe in sorghum in Mali, using simple pedigree or recurrent selection procedures. This revised version was published online in August 2006 with corrections to the Cover Date.     

Diallel analysis of resistance to head blight caused by Fusarium culmorum in winter wheat

Summary Ten homozygous winter wheat genotypes representing different levels of resistance to Fusarium head blight were crossed in all possible combinations excluding reciprocals. Parents, F₁ and F₂ were inoculated with one pathogenic strain of Fusarium culmorum. Data for head blight, observed 21 days after first inoculation (OBS-2), and for the area under the disease progress curve, based on observations 14, 21 and 28 days after first inoculation (AUDPC), were analyzed. The contrast between parents and F₁ crosses indicated dommance effects of the resistance genes. Diallel analysis according to Griffing's Method 4, Model 1 showed significant general combining ability (GCA) effects for both F₁ and F₂; specific combining ability effects were not significant. With the exception of one genotype for which general performance for Fusarium resistance was not in agreement with its GCA, the resistance to F. culmorum was uniformly transmitted to all offspring, and the parents can be described in terms of GCA. It is suggested that in the progenies with one of the awned lines as parent, one resistance gene was linked with the gene coding for presence of awns, located on chromosome 4B. A single observation date, taken at the right time, was as effective in assessing resistance as the AUDPC.     

Diallel study of open-pollinated maize varieties in Trinidad

Summary In Trinidad, maize (Zea mays L.) is primarily harvested in the immature stage as green ears for human consumption. The purchase of popular imported hybrid seed has become a substantial component of the economic inputs of maize production. The objectives of this study were to investigate combining abilities and heterotic patterns among available open-pollinated varieties and to assess correlations among five important traits: time to silking, plant height, grain yield, ear size, and marketable ears per hectare. General combining ability was significant for all traits. Specific combining ability was significant for all traits except ear size. Three intervarietal crosses showed moderate levels of heterosis (10–27%), and several yielded similarly to the control hybrids, Pioneer X304 and Pioneer 3078. The cross Acid Soil Tolerant 1991 SA-3 X ICTA Farm Corn was selected as the most suitable base population for mass selection. Phenotypic and genotypic correlations among the five traits studied were all positive and significant. Populations which flowered early were shorter and yielded less than the late flowering and taller populations and population crosses included in this study.     

Diallel analysis over two environments for blossom-end scar size in tomato

Summary To investigate genetic regulation of blossom-end scar size in tomato (Lycopersicon esculentum Mill.), a half diallel cross including 10 parents was grown under warm fall conditions in Bradenton, Florida, and cool winter conditions in Hazeva, Israel. The parents were a random sample representing all available fresh market tomato breeding lines commercially grown under subtropical field conditions. A randomized, complete block design with three replications was used and the blossom-end scar index (BSI), a measure for scar size relative to truit size, was measured on 40 and 25 fruits per plot in Bradenton and Hazeva, respectively. Analysis of variance for BSI indicated highly significant (P=0.001) variation among parents and among F1's in both environments. In Bradenton and Hazeva both, the difference in average BSI between parents and F1's was not significant suggesting insignificant overall dominance effects. Further partitioning of variation within F1's indicated that general combining ability (GCA) effects were highly significant in both environments, whereas specific combining ability (SCA) effects were significant at P=0.001 in Bradenton, but only at P=0.05 in Hazeva. Estimated variance components for GCA and SCA effects indicated that BSI inherited mainly additively in both environments. Analysis combined over environments indicated that variation in sensitivity to environments was 5-fold higher among parents than among F1's. The genotype x environment variance component was not large enough to justify testing over more than one environment for population improvement purposes and early testing of hybrids. Evaluation of inbred lines, however, may have to be done in more than one environment, especially for Suncoast-derived material. Under temperatures in Hazeva, genotype differences were more pronounced and heritabilities higher than under high temperatures in Bradenton. The estimated overall single plot heritability was 0.63. Breeding lines with a pointed blossom-end morphology (e.g. NC 8276 and NC 140 in this study) generally had small blossom-end scars, and intercrossing of these lines or crossing with non-pointed, moderately smooth breeding lines generally resulted in smooth hybrids.     

Genetics of resistance to bean golden mosaic virus in Phaseolus vulgaris L.

Summary The genetics of resistance to bean golden mosaic virus (BGMV) was studied in an 8×8 complete diallel cross of common bean, Phaseolus vulgaris L. The 28F₁ hybrids, their reciprocals, and eight parents were artificially inoculated with BGMV under glasshouse conditions. Data were recorded and analyzed for foliar yellowing, plant dwarfing, flower abortion, and pod formation, using a randomized complete block design with two replications.General combining ability (GCA) mean squares were highly significant (P<0.01) and larger than values for specific combining ability for all traits. Reciprocal and maternal effects were nonsignificant. Cultivars Royal Red and Alubia Cerrillos possessed significant negative and positive GCA for all traits, respectively. Porrillo Sintetico also had negative GCA for all traits except plant dwarfing. None of the GCA effects were significant for Great Northern 31 and PVA 1111. Positive associations existed among all traits studied.     

Diallel analysis of barley for resistance to leaf stripe and impact of the disease on genetic variability for yield components

Barley breeders in Syria attempting to develop barley (Hordeum vulgare L.) cultivars resistant to barley leaf stripe (BLS) disease caused by Pyrenophora graminea Ito & Kuribayashi [anamorph Drechslera graminea (Rabenh. Ex. Schlech. Shoem.)]. Information on the combining ability for BLS resistance in Syria is not available. This study was conducted to evaluate, in 10 genetically diverse barley parents, general combining ability (GCA) and specific combining ability (SCA) effects towards the determination of the genetic basis of disease resistance and to estimate genetic variability for yield components and its modification by BLS. Ten parental genotypes varying in their reactions to BLS were crossed in a half-diallel mating design to generate 45 full-sib families. The families and the parents were inoculated with P. graminea and evaluated for resistance in replicated field tests (three inoculated and three non-inoculated plots). The parents chosen showed wide variations for resistance to BLS. Genetic component analysis showed significant effects for both GCA and SCA for resistance to BLS, suggesting that additive as well as non-additive genetic mechanisms were involved in the expression of resistance in these parents. GCA effects were more important than SCA effects. Resistant parents exhibited high negative GCA indicating that additive gene effects were more predominant, and suggesting their prime suitability for use in barley breeding programs to improve resistance to BLS. Narrow-sense heritability was 58% and broad-sense heritability was 99% indicating that selection for BLS resistance should be effective in these crosses. A high genetic variability for the agronomic traits studied was observed. Yield components decreased significantly in inoculated plants and more pronounced in diseased plants. Significant GCA was observed for all traits. Values for GCA were, in some cases, significantly modified by BLS. This indicates that attention must be paid to the danger of drawing conclusion in quantitative genetics studies dealing with both diseased and healthy plants. Two genotypes, Banteng and Igri, had high negative GCA effects and are promising parents for enhancement of BLS resistance.     

Correlation between late blight resistance and foliage maturity type in potato

The genetics of race-non-specific foliage resistance against Phytophthora infestans, of foliage maturity type, and of their association in potato (Solanum tuberosum) were studied. Six progenies were derived from a half-diallel set of crosses between diploid potato clones that represented a broad pool within the genus Solanum and were free of any of the 11 known R genes for late blight resistance. The progenies were evaluated for resistance to late blight and for foliage maturity type, and five of them showed a significant correlation between the two traits. The correlation did not account for all variation that was present for both traits, as reflected in the analysis in which the relative AUDPC values were adjusted for foliage maturity type. The present study adds to previous results: resistance against P. infestans always coincides with late foliage maturity. However, the results also indicate that some selection for late blight resistance without affecting the foliage maturity type should be possible.     

Diallel analysis of resistance to Septoria tritici isolates in durum wheat

Summary All crosses, except for reciprocals, were made among ten cultivars originating from crop improvement programs in North Africa and the Middle East. The entries varied widely in reaction to Septoria tritici. F₁ and F₂ progenies of the crosses were evaluated using eight S. tritici isolates from seven countries in the Mediterranean area. Thus, sixteen separate combining ability analyses were excecuted. General combining ability (GCA) was the major component of variation, although specific combining ability (SCA) was present in most cases. Additive variance thus appears to be of predominant importance. Nevertheless, non-additive variance may interfere when line selection in a breeding program is practiced. While differing greatly among cultivars, specific GCA effects for each cultivar separately were of similar magnitude for all isolates. Ranking statistics determined that cultivars were ranked in similar order for both means and specific GCA effects independent of the isolate used. Different isolates may therefore interact with similar or identical genetically controlled mechanisms in a particular cultivar. This could indicate the absence of differential gene-for-gene relationships and suggests that isolates vary in aggressiveness rather than in virulence.     

Trypsin inhibitor activities as useful taxonomic traits of sweetpotato varieties

Summary Trypsin inhibitor activities (TIAs) of roots of 53 sweetpotato varieties were used as traits for intraspecific grouping. Three numerical taxonomic techniques were evaluated on the basis of breeding records of 42 varieties. When UPGMA was used as the clustering method, phenograms from average Euclidean distance and Manhattan distance performed better than those from correlation, and 8-character matrix gave better phenograms than 4- or 11-character matrix in average, when both node counts and detailed assignments of correct pairs were compared. The best phenogram simultaneously assigned 10 pairs exactly with a probability by chance of 2.84×10^–10. For cladistic analysis, mid-point rooting Wagner in the Wagner78 program package was applied to construct 3 cladograms using 4-, 8-, or 11-character matrix as input data. The cladograms from 8- and 11-character matrices were better than that from 4-character matrix, when total relative path length required to search for group members of 11 varieties and assignments of correct pairs were compared. In all, TIAs are useful traits for intraspecific grouping of sweetpotato varieties used. Eleven varieties with unknown breeding records were assigned to appropriate groups accordingly.Abbreviations T Tainong - TN15 Tainan-15 - CH Changhua - HSW Honsinwei - PR Puerto Rico - CENT Centennial - OK Okinawa - AYS (MKHuP) American Yellow Skin (Meikuohuangpee) - ARS (MKHoP) American Red Skin (Meikuohonpee) - PHL Paiholan - HZ Honzuo - TI Trypsin Inhibitor - TIA Trypsin Inhibitor Activity - d with dialysis - nd without dialysis - h with heating - nh without heating     

Diallel analysis of yield components of snap beans exposed to two temperature stress environments

Ten snap beans (Barrier, Brio, Carson, Cornell 502, CT 70, HB 1880, Hystyle, Labrador, Opus and Venture) were selected for differential temperature tolerance and used as parents in a complete diallel mating design. The 45 F₁ hybrid lines (with reciprocals) and parents were screened at 32 C day/28 C night, and in a separate experiment, 16 C day/10 C night, during reproductive development in replicated controlled environments. Variation for yield under temperature treatments was observed among parents and hybrids, with certain hybrids exceeding parental performance. Significant (P 0.0001) general combining ability (GCA), and significant (P 0.05) specific combining ability (SCA) were observed for yield components including pod number, seed number, and seeds per pod. There was evidence that pod number and seeds per pod under temperature stress are under separate genetic control. Reciprocal effects and heterosis were not significant. GCA could not be predicted from parental performance. The breeding line Cornell 502 had the highest GCA under high temperature, and the cultivar Brio had the highest GCA under low temperature. The cross Brio × Venture was high yielding in both temperature treatments. Heat tolerance and chilling tolerance were associated in certain parents and hybrids. However, performance under high and low temperature treatments was not generally correlated in the parents and hybrids, indicating that these traits should be selected separately.     

Variation in sweet potato for tolerance to some physical and biological stresses

Summary Sweet potato cultivars, breeding lines and unselected seedling clones were grown under 9 stress conditions in field and greenhouse; heavy soil, space competition, competition with maize, shading, flooding, drought, acidity, salinity, and weevil infestation. High root yield was considered to be a sign of stress tolerance. Stresses were shown to reduce the growth of shoots and roots, except flooding, which increased fibrous root production. The percentge of plants showing high stress tolerance varied from 0.35 to 30.90 for the different stress situations. Tolerances to stresses tended to occur together, as shown by low but significant correlations, significant chi-squares for numbers of plants with multiple stresses, and by low but significant correlations between yield and multiple stresses. Root flooding, space and fertility competition, and soil acidity appear to be the stress factors most closely related to production in heavy soils. Yet the magnitude of the correlations suggest that other factors or random variation also affect yield, and thus the predictive value of greenhouse stress test is presently limited.     

New source of resistance to mosaic virus transmission by Aphis gossypii in melon

The melon accession ‘TGR-1551’ shows a clear and total resistance to the transmission of several isolates of CMV and ZYMV when A. gossypii was used as the vector. The genetic analysis of the progenies obtained crossing this accession with the susceptible Spanish cultivar ‘Bolade Oro’ showed that the resistance to mosaic virus transmission is conferred by the presence of a dominant gene. There are also evidences that this dominant gene is different from ‘Vat’ gene. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic variation in cocksfoot (Dactylis glomerata L.) populations for mottle virus resistance

Summary Highly significant and continuous variation in the degree of injury due to cocksfoot mottle virus (CfMV) infection was found among clones of 7 cocksfoot (Dactylis glomerata L.) populations, taken at random among surviving plants in 9 year old swards. Broad sense heritabilities for CfMV injury ranged from 0.52 to 0.91 within populations, and genotypic correlations between CfMV injury and total DM-yield ranged from –0.46 to –0.88. The relationship between CfMV injury and DM-yield could be described by a second degree curve. CfMV injury was to some extent genotypically correlated in the positive direction with crude protein content and digestibility, and negatively with crude fiber content, especially in the first cut. Artificial infection of plants from the original populations with CfMV in a simulated sward experiment, did not reveal any significant differences between populations in tolerance towards CfMV infection. Infection caused a 54.5% increase in the number of dead plants per plot, relative to uninfected plots, but only a 4.5% reduction in dry matter yield. There is a clear tendency that synthetic populations selected for high yield are less tolerant towards CfMV infection than unselected or low yielding populations. The resistance found in these cocksfoot populations is a sort of tolerance, and the results indicate that the level of tolerance can be increased by selection.     

Breeding for resistance to yellow disease of hyacinths. I. Investigations on F1's from diallel crosses

Summary Analysis of an incomplete diallel design with 14 hyacinth cultivars for resistance to yellow disease showed a significant GCA and a heritability of 0.75. A correlation appeared to exist between flowering date and degree of resistance to yellow disease, early flowering seedlings being generally less resistant. Of 1440 seedlings 69 were selected as resistant on the basis of absence of leaf symptoms. The results of the selection appeared to be in agreement with the breeding value (GCA) of the parent cultivars. The possible influence of chromosome numbers on the degree of resistance to yellow disease is discussed.     

Breeding for resistance to yellow disease of hyacinths. II. Influence of flowering time,leaf characters,stomata and chromosome number on the degree of resistance

Summary Analysis of an incomplete diallel design with 14 hyacinth cultivars and 4 wild accessions of Hyacinthus orientalis showed a significant GCA component for resistance to yellow disease. The late flowering hyacinth cultivars King of the Blues and Marconi and the early flowering Hyacinthus orientalis 70129 were found to be the best combiners for yellow disease resistance. Within a cultivar, the degree of earliness itself was not associated with the degree of resistance. Correlation coefficients of leaf characters and degree of resistance showed that hyacinths with short and/or narrow leaves are generally more resistant than those with long and/or broad leaves. Tetraploid cultivars with few, large stomata tend to be susceptible, diploid ones with many small stomata tend to be the more resistant.     

Inheritance of resistance to cucumber green mottle mosaic virus in muskmelon (Cucumis melo L.)

Summary Studies on inheritance of resistance to CGMMV showed that resistance was governed by polygenes with recessive nature. Out of 15 crosses studied, 10 were found to be interacting. All the interacting crosses (except one Phoot x Harela) showed duplicate type of epistasis. Kachri x Phoot (R × R type) cross exhibited heterosis in F₁ and transgressive segregation in F₂ for resistance. Studies pointed out the need to exploit this F₁ further to develop a new breeding line with higher level of resistance than both the parents.     

Genetic variation among cocoa (Theobroma cacao L.) families for resistance to cocoa swollen shoot virus disease in relation to total phenolic content

Phenolic compounds have been suggested as one of the defence mechanisms to cocoa swollen shoot virus disease (CSSVD), but not well studied. Correlation and genetic variation of total phenolic content (TPC) and CSSVD resistance among 53 cocoa families were investigated. Three‐month‐old seedlings of 15 families obtained from an incomplete 6 × 3 NCII mating design, of 24 families from a 3 × 8 NCII mating design and of 14 other families were evaluated for CSSVD and TPC. Plants were inoculated with viruliferous mealybugs carrying the New Juaben CSSV strain (1A) in a gauze house facility. A single seedling randomization within blocks procedure was followed, using the gauze house units as blocks. There were six blocks with five seedlings of each family randomized within each block. Disease severity scores on leaf flushes at the first, second, third and seventh flushes after inoculation were recorded. The TPC before and 3 months after inoculation was also determined. Family effects were highly significant (P ≤ 0.01) for CSSVD severity scores and TPC. Narrow‐ and broad‐sense heritability estimates were low for CSSVD severity but moderate to high for TPC evaluations. Correlations between severity scores and TPC were weak (r = ?0.22 to 0.40) suggesting that the TPC may be of little value in selecting CSSVD resistance varieties in cocoa. Additive effect in terms of significant GCA was important for CSSVD severity scores whereas both additive and non‐additive effects were important for TPC values when the 3 × 8 and 6 × 3 NCII mating designs were analysed. Only clones GU 239/H, GU 290/H and GU 225/V had favourable GCA effects for CSSVD symptom expression indicating their potential for developing progeny with high levels of resistance to CSSVD infection.     

Screening sweet potato for source potentials

Summary Screening sweet potato, Ipomoea batatas, L., for source potentials is more difficult than for sink capacities. Twenty clones were grafted to four tester varieties to screen them for source potentials in relation to sink capacities which are interdependent. Source potential of a clone was measured by its average scion effect when grafted on the four tester varieties. There were significant differences in source potentials among the twenty clones. Seven clones were selected for having high source potentials. Clone TIS 2498 was the best. Degrees of response of source to sink were estimated using the regression method for twenty clones showed significant differences and ranged from b–0.45 to b=2.06. Source potential showed significant relationship (r=0.62^**) with response of source to sink. Implication of this approach to sweet potato breeding is discussed.     

Difference between USA and French isolates of tobacco etch virus and pepper mottle virus displayed by doubled haploid line analysis

Summary Doubled haploid peppers resistant in France to specific strains of tobacco etch virus (TEV) and pepper mottle virus (PeMV) were indexed for resistance to USA strains of TEV and PeMV. The doubled haploids were inoculated when four to six true leaves had developed. The peppers were indexed after an incubation period, and a disease index was calculated. Plants without viral symptoms were reinoculated. Plants challenged to TEV were inoculated four times. Doubled haploids, TEV-resistant in France, were susceptible to the USA strain by the fourth screening. All doubled haploid lines showed TEV symptoms after the fourth inoculation. Two doubled haploids lines, no. 4 and no. 8, had about 6% resistance to TEV after the fourth inoculation. Doubled haploid line no. 5 was 100% resistant to PeMV. The results confirm that the USA PeMV and the USA TEV isolates are different pathotypes than the French ones used originally to screen the doubled haploids. In addition, the use of doubled haploids to identify pathotypes of PeMV and TEV is demonstrated.