Evaluation of nitrogen cycling and fish production in seasonal ponds (‘Fingerponds’) in Lake Victoria wetlands,East Africa using a dynamic simulation model

A dynamic model was developed to simulate nitrogen (N) flows and fish production in seasonal wetland fish ponds (Fingerponds) based on organic manuring and natural food production. The model incorporates pond water depth, food availability, fish stocking densities, fish and fingerling weights at stocking, reproduction rate, manure type and application rates. The ponds were fertilized fortnightly with 1042 kg ha⁻¹ chicken manure. The model captured the dynamics of hydrology, nutrients and fish and demonstrated that similar fundamental processes underlie fish production in these systems. The model predicted annual fish yields of up to 2800 kg ha⁻¹. Simulated fish production, chlorophyll a and dissolved inorganic N concentrations were comparable with field measurements. Using the model, N budgets and estimates of all N flows were made. Most of the N input into the ponds (60–70%) accumulated in the bottom detritus of the pond and only 8–10% was converted into fish biomass, of which about half consisted of small fish. Fish production in Fingerponds was limited by turbidity induced light limitation and by nutrient limitation. Reduction of variability of fish production should come from reduced turbidity and sufficient nutrient input to minimize light limitation and maximize fish growth.     

Integration of mapping and socio‐economic status of cage culture: Towards balancing lake‐use and culture fisheries in Lake Victoria,Kenya

Mapping of lacustrine aquaculture and socio‐economic assessment of cage farmers operations can be employed as decision support tools in an integrated fashion for fisheries management. We simultaneously mapped and reported the location of cages and characterized socio‐economic and indicators of cage farming in Lake Victoria, Kenya. Structured questionnaires and interviews from cage farmers generated socio‐economic data and management information. Vital water quality parameters were analyzed in selected sampling sites. Cage culture was found to be a male‐dominated activity with the majority of owners aged <45 years (n = 23; 59%). Siaya County had the highest cage establishments (n = 20) and number (n = 1,343). Proximity to Dominion Farm, pioneers of cage culture, as well as decreased presence of water hyacinth (Eichhornia crassipes) coverage may have contributed to high cage numbers in Siaya County. The only species cultured was Oreochromis niloticus. Most cage establishments (n = 30; 76%) were located within 200 m from the shoreline. Total operational costs for a cycle (8 months) amounted to USD 465,250 worth a total production value of USD 8,827,000, farmers often realizing a mark‐up of >100%, indicative of its robust viability within “The Blue Economy” concept. With the increasing number of cages in the lake, there is the need for policy and regulations to guide its investment, both to protect local economies through improved business practices and to ensure sustainability for the lake ecosystem due to the likelihood of exacerbation in water quality deterioration in cage culture sites.     

Distribution of and reproductive isolation among color morphs of a rock-dwelling Lake Victoria cichlid (Haplochromis nyererei)

Geographical, macro- and microhabitat distribution of and mate recognition among color morphs of a complex of Lake Victoria cichlids was studied. The distribution of most morphs was mutually exclusive but two morphs overlapped extensively and differed only in microhabitat requirements. Coloration differences between them were inherited, and wild fishes were homozygous in this respect. Positive morph assortative female mate choice was demonstrated. Over the largest part of their common geographical range intermediate phenotypes are absent and the two morphs are to be considered two biological species. However, in populations at one end of the range intermediate phenotypes with continuously varying male coloration make up the majority of the individuals. It is suggested that the status of color morphs as phenotypes of one species or as separate biological species is a function of environmental conditions that vary considerably between the localities. The data support the hypothesis that polymorphisms can be a step preceding speciation in cichlid fish.     

Distribution of and reproductive isolation among color morphs of a rock-dwelling Lake Victoria cichlid (Haplochromis nyererei)

Abstract— The geographical and macro- and microhabitat distribution of and mate recognition among color morphs of a complex of Lake Victoria cichlids were studied. The distribution of most morphs was mutually exclusive, but two morphs overlapped extensively and differed only in microhabitat requirements. Coloration differences between them were inherited, and wild fishes were homozygous in this respect. Positive morph-assortative female mate choice was demonstrated. Over the largest part of their common geographical range, intermediate phenotypes are absent and the two morphs are to be considered two biological species. However, in populations at one end of the range, intermediate phenotypes with continuously varying male coloration make up the majority of the individuals. It is suggested that the status of color morphs as phenotypes of one species or as separate biological species is a function of environmental conditions that vary considerably between the localities. The data support the hypothesis that polymorphisms can be a step preceding speciation in cichlid fish.     

Detection of tilapia lake virus (TiLV) infection by PCR in farmed and wild Nile tilapia (Oreochromis niloticus) from Lake Victoria

Tilapia lake virus disease (TiLVD) has emerged to be an important viral disease of farmed Nile tilapia (Oreochromis niloticus) having the potential to impede expansion of aquaculture production. There is a need for rapid diagnostic tools to identify infected fish to limit the spread in individual farms. We report the first detection of TiLV infection by PCR in farmed and wild Nile tilapia from Lake Victoria. There was no difference in prevalence between farmed and wild fish samples (p = .65), and of the 442 samples examined from 191 fish, 28 were positive for TiLV by PCR. In terms of tissue distribution, the head kidney (7.69%, N = 65) and spleen (10.99%, N = 191), samples had the highest prevalence (p < .0028) followed by heart samples (3.45%, N = 29). Conversely, the prevalence was low in the liver (0.71%, N = 140) and absent in brain samples (0.0%, N = 17), which have previously been shown to be target organs during acute infections. Phylogenetic analysis showed homology between our sequences and those from recent outbreaks in Israel and Thailand. Given that these findings were based on nucleic acid detection by PCR, future studies should seek to isolate the virus from fish in Lake Victoria and show its ability to cause disease and virulence in susceptible fish.     

The effects of different solids and biological filters in intensive pacific white shrimp (Litopenaeus vannamei) production systems

Biofloc systems rely on suspended solids in the water to house microbes that can remove or cycle nitrogenous wastes; however, nitrogen cycling can be inconsistent. In contrast, external biofilters are used in many recirculating systems to provide a more consistent environment for microbes to process nitrogen. Regardless of the biofiltration approach, solids levels must be controlled to prevent issues in shrimp such as gill fouling, low dissolved oxygen levels, and other negative impacts. The purpose of this study was to examine the effects of settling chambers versus foam fractionators for solids filtration and to compare external biofilters to the biofloc approach as biofiltration strategies. Sixteen 1-m³ round, polyethylene tanks were randomly assigned to four treatments, each of which had four replicate tanks. Eight biofloc systems were established: four using settling chambers for solids control (BF-S) and four using foam fractionators (BF-F). The other eight tanks used external biofilters; four had settling chambers (EB-S) and the other four had foam fractionators (EB-F). All 16 systems were stocked with 250 shrimp at an average size of 4.3 g which were grown for 85 days. There were no significant differences in shrimp production between treatments; however, variability was high in biofloc systems. Nitrite levels were significantly lower in systems with fractionators compared to systems with settling chambers. The concentrations of dissolved Na, Mg, Ca, Sr and Ba in the water were significantly reduced in treatments with settling chambers. The results of this study show that filtration choices significantly impact short- and long-term water quality and reusability but may not have much effect on shrimp production in the short-term.     

Diet of the largemouth bass, Micropterus salmoides (Lacepède), in Lake Naivasha, Kenya

Abstract The major food items of adult largemouth bass, Micropterus salmoides (Lacepède), in Lake Naivasha, Kenya are not markedly different from those in its native range. Although insects and their larvae are major components of the diet for both temperate and equatorial populations of juvenile bass, the equatorial population also eats Procambarus clarkii (Girard), juvenile fish and aquatic weeds. In temperate populations they also eat crustaceans, rotifers and oligochaetes. The frequency of occurrence of the major prey organisms in the stomachs of M. salmoides varies seasonally with population peaks in these organisms. Similar to North American populations, the Naivasha population feeds during the day between dawn and dusk. In contrast to temperate populations, the population of M. salmoides in this equatorial lake feeds throughout the year, with feeding intensity correlated with water temperature.     

The budget of nitrogen in the grow‐out of the Amazon river prawn (Macrobrachium amazonicum Heller) and tambaqui (Colossoma macropomum Cuvier) farmed in monoculture and in integrated multitrophic aquaculture systems

This work determined the nitrogen inputs, outputs and accumulation in compartments of stagnant earthen ponds for the monoculture and integrated multi‐trophic aquaculture (IMTA) of the Amazon river prawn (Macrobrachium amazonicum) and tambaqui (Colossoma macropomum), using recycled hypereutrophic water. A completely randomized experiment was designed with four treatments and three replications: PM–monoculture with 30 prawns/m², FM ‐ monoculture with 3 fish/m², IMTA ‐ polyculture with 30 prawns/m² and 30 fish/m² free, POLY‐CAGE ‐ polyculture with 30 prawns/m² free and 40 fish/m³ in net‐cages. Animals, rain, water, feed, soil, gas, accumulated sludge, and suspended sediments were collected throughout the experiment to determine their nitrogen contents and to calculate the nitrogen budget. Results showed that much of the nitrogen available escapes to atmosphere as N₂ (~40%–56%) after denitrification or accumulated within bottom sludge (~14%–42%). The remaining nitrogen was converted in animal biomass (~5%–21%) or was discharged to receiving waterbodies in the outlet water (~11%–13%). Feed management appeared to influence the major biological processes in the aquatic nitrogen cycle, such as photosynthesis and denitrification. The fish‐prawn IMTA systems converted approximately 53%–75% of feed nitrogen into harvestable products, which is more efficient than the 19%–46% of feed nitrogen converted in the monocultures. However, a large amount of nitrogen is accumulated in the pond bottom in all systems. An increased prawn density or the addition of a mud‐feeder species to the culture may enhance the incorporation of this material in harvested biomass, improving the efficiency of the systems.     

Fatty Acid Profiles and Lipid Oxidation Status of Sun Dried,Deep Fried,and Smoked Sardine (Rastrineobola argentea) from Lake Victoria,Tanzania

Freshwater fishes contain long chain omega-3 and omega-6 polyunsaturated fatty acids (PUFAs) of highest nutritional value. PUFAs in fish are susceptible to oxidative damage during processing and subsequent storage. Sardines (Rastrineobola argentea) are an important fish species of Lake Victoria, constituting 72.3% of the total landings by weight on the Tanzanian side of the lake. Fatty acid profiles and lipid oxidation status of sun-dried, deep-fried, and smoked sardines were investigated. Lipid oxidation was assessed by peroxide value, thiobarbituric acid reactive substances (TBARS), and free fatty acids. Fatty acids were analyzed by gas chromatography with flame ionization detector. The three omega-3 PUFAs: docosahexaenoic acid (C22:6n-3), docosapentaenoic acid (C22:5n-3), and eicosapentaenoic acid (C20: 5n-3) contributed 57–60, 63, and 38% of PUFAs in sun-dried, smoked, and deep-fried sardines, respectively. Lipid oxidation reactions were more pronounced in sardines dried on sand and rocks, with TBARS values 97.87 and 84.18 µmolMDA/kg, respectively. The polyene index was significantly lower (p < 0.05) in deep-fried sardines, indicating lower retention of PUFAs in the product. Lake Victoria sardines are a rich source of omega-3 PUFAs. PUFAs in sun-dried sardines are prone to oxidative damage. Smoking resulted in relatively higher retention of omega-3 fatty acids in products.     

A comparison of three land-based containment systems for use in culturing green sea urchins, Strongylocentrotus droebachiensis (Müller) (Echinodermata: Echinoidea)

Worldwide, most sea‐urchin populations are in decline. Future market demands will likely be met through aquaculture, which may consist of gonad enhancement of wild‐caught sea urchins. In this context, we examined three land‐based containment systems for suitability in maintaining commercial‐size green sea urchins (Strongylocentrotus droebachiensis). Mortality rate, gonad quantity, gonad quality (colour, brightness, firmness, texture) and cleaning efficiency associated with each containment system were the criteria for comparing the effectiveness of the systems (large raceways, small raceways and washtub tanks). After 6 weeks, urchins maintained in large raceways displayed significantly higher mortality rates than urchins maintained in either the small raceways or washtub tanks (mean±SD: 24.3±10.4%, 8.0±3.5% and 4.3±1.5% respectively). Significant differences in cleaning time were detected among the three systems with washtub tanks requiring significantly more cleaning time (0.11±0.02 min urchin^?1) than the other two systems and large raceways requiring significantly less cleaning time (0.06±0.02 min urchin^?1) than the other two systems. No significant differences in gonad characteristics were detected among the three containment systems. Because of the higher mortality rate in the large raceways and the increased cleaning time required for the washtub tanks, the small raceways were considered to be the best of the three systems tested.     

Comparative study of the culturable microbiota present in two different rearing systems,flow‐through system (FTS) and recirculation system (RAS), in a great scallop hatchery

A comparison of the culturable microbiota present in the different compartments of a great scallop (Pecten maximus) hatchery with two experimental production systems, FTS and RAS, throughout a cycle of larval rearing was carried out. All isolates obtained from broodstock gonads, larvae, tank water, biofilm, microalgae, UV‐treated water and biofilter in both systems at three sampling times were characterized by biochemical tests and identified by sequencing of the 16S rRNA gene. Some of the genera were found to be exclusive of broodstock gonads, such as Sinobacterium, Kordia or Microbulbifer, and differences between gonad microbiota before and after spawning were detected. The number of morphotypes obtained in water, larvae and biofilm was similar in both systems, as well as the behaviour of the microbial populations in almost all hatchery compartments, in which Vibrio, Neptuniibacter, Pseudoalteromonas and Shewanella were the most common genera. The diversity obtained was analysed using the principal component analysis (PCA) and Fisher's exact test, showing that the microbial communities present in the common compartments between FTS and RAS did not significantly differ. These results suggest that, at least from a microbiological point of view, the recirculation system could be a good alternative for the production of scallop larvae.     

Review of rice–fish-farming systems in China — One of the Globally Important Ingenious Agricultural Heritage Systems (GIAHS)

Rice–fish-farming systems constitute a unique agro-landscape across the world, especially in tropical and sub-tropical Asia. Rice is a globally important staple food crop, with a wide distribution and constituting diversified varieties. The introduction of fish rearing to rice farming creates an integrated agro-ecological system. China boasts a history of 1700 years in rice–fish-farming practice. It is no longer a sole agro-production practice, but an agro-cultural pattern. Therefore, it has been listed by the Food and Agriculture Organization of the United Nations (FAO) and the United Nations Educational, Scientific and Cultural Organization (UNESCO) as one of the Globally Important Ingenious Agricultural Heritage Systems (GIAHS). Qingtian County of the Zhejiang province has been selected as a pilot conservation site. The rice–fish-farming systems in China diversify China's agro-landscape and favor the conservation of species variety of both rice and fish. The survival of deep-water rice, an indigenous rice variety, and Oujiang red carp, an indigenous fish variety, are cases in point. Being low external input systems, the rice–fish-farming systems necessitate only small amounts of pesticide and fertilizer. The application of pesticides can be lowered to 50% of that of modern, high-input rice production; sometimes, no pesticide application is required. The natural enemies of rice pests show a prominent rise, making the bio-control of rice diseases and pests highly feasible. The rice–fish-farming system is also of great significance in global food security and global change. It provides food and animal protein for subsistence farmers living in ecologically-fragile mountainous regions. It also reduces economic risks that these farmers potentially face. The nitrogen-fixation role of the system increased the content of organic matter, total nitrogen and total phosphorus in the soil by 15.6–38.5%. It also reduces the emission of CH₄ by nearly 30% compared with traditional rice farming. However, the economical development and industrialization in China pose a threat to rice–fish farming and, consequently, the numbers of farmers involved in rice–fish farming are decreasing. This calls for the Chinese government to engage itself in the conservation and development of this system and to innovate the existing technologies. It would also be useful, in the meantime, to exploit and conserve rice–fish farming as eco-tourism resources, so that the income of the mountainous farmers can be increased and this important, indigenous agro-culture be conserved and developed.     

Effects of feeding rate and frequency on growth performance,digestion and nutrients balances of Atlantic salmon (Salmo salar) in recirculating aquaculture systems (RAS)

A 10‐week study was conducted to investigate the effects of feeding rate and frequency on growth performance, digestion and nutrients balances of Atlantic salmon (Salmo salar) in replicated recirculating aquaculture systems (RAS). Replicated groups of juvenile salmon weighing 90 ± 2.5 g (mean ± SD) were fed a commercial feed (21.63 MJ kg^?1 gross energy) to designed feeding rate (1.4%, 1.6% and 1.8% body weight day^?1, BW day^?1) and feeding frequency (2 and 4 meals day^?1) combinations. Specific growth ratio varied between 1.15 ± 0.02 and 1.37 ± 0.16% day^?1, and feed conversion ratio ranged from 0.96 ± 0.03 to 1.16 ± 0.02. The nitrogen and phosphorus retention rates were from 36.50 ± 1.94 to 47.08 ± 5.23% and from 20.42 ± 1.05 to 38.59 ± 2.80%. Apparent digestibility coefficients (ADC) in dry matter, protein, lipid and energy showed no significant differences for all groups. However, fish fed at 1.6% BW day^?1 and 4 meal day^?1 groups had relatively better growth and nutrient retention efficiency compared to other groups. In addition, concentrations of nitrogenous and phosphorous compounds were also detected in this study. These results suggested that salmon of 100–200 g in RAS could in practice be fed at 1.6% BW day^?1 and 4 meals day^?1, taking environmental impacts into account.     

Long‐term records (1781–2013) of European eel (Anguilla anguilla L.) production in the Comacchio Lagoon (Italy): evaluation of local and global factors as causes of the population collapse

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The influence of stocking density, light and temperature on the growth, production and nutrient removal capacity of Porphyra dioica (Bangiales, Rhodophyta)

The optimal conditions for growth of Porphyra dioica gametophytes were investigated in the laboratory, focusing on bioremediation potential. Porphyra dioica is one of the most common Porphyra species along the northern coast of Portugal and can be found year-round. The influence of stocking density and photon flux density (PFD) on the growth, production and nutrient removal was tested. Maximum growth rates, up to 33% per day, were recorded with 0.1 g fw l^− 1 at 150 and 250 μmol photons m^− 2 s^− 1. Growth rate decreased significantly with increasing stocking density. Productivity (g fw week^− 1) had an inverse trend, with more production at the higher stocking densities. At 150 μmol m^− 2 s^− 1 and with 1.5 g fw l^− 1, 1.4 g fw week^− 1 were produced. At this PFD, there was no significant difference in production between 0.6 to 1.5 g fw l^− 1. Nitrogen (N) content of the seaweeds decreased with increasing stocking densities and PFDs. The maximum N removal was recorded at 150 μmol m^− 2 s^− 1, with 1.5 g fw l^− 1 stocking density (1.67 mg N day^− 1). However, the N removed by thalli at 50 μmol photons m^− 2 s^− 1 was statistically equal to that at 150 and 250 μmol photons m^− 2 s^− 1, at a stocking density of 1.0 g fw l^− 1. The influence of temperature and photoperiod on growth and reproduction was also assessed. Growth rates of P. dioica were significantly affected by temperature and photoperiod. In this experiment (with 0.3 g fw l^− 1 stocking density), the highest growth rate, 27.5% fw day^− 1, was recorded at 15 °C and 16 : 8¯, L : D¯. Male thalli started to release spermatia 21 days after the beginning of the experiment, in temperatures from 10 to 20 °C and with 10, 12 and 16 h of day length. Unfertilized female-like thalli were observed at 10 to 20 °C, under all photoperiods tested. Growth of these thalli declined after 4 weeks. By then, formation of young bladelets in the basal portion of these thalli was observed. After 7 weeks all biomass produced was solely due to these vegetatively propagated young thalli, growing 22.4% to 26.1% day^− 1. The results of this study showed that P. dioica appears to be a candidate as a nutrient scrubber in integrated aquaculture systems.     

Applying biofloc technology in the culture of juvenile of Piaractus brachypomus (Cuvier, 1818): Effects on zootechnical performance and water quality

The aim of this study was to assess the zootechnical performance and water quality of a cachama blanca (Piaractus brachypomus) culture using biofloc technology (BFT) versus a system with daily water exchange (DWE). To do this, 180 juveniles (mean initial weight: 5.40 ± 0.19 g) were distributed in 12 circular plastic tanks with stocking densities of 20 or 40 individuals m³; then, they were cultured for 91 days. BFT treatments kept a C:N ratio approximately of 15:1. Temperature, pH and oxygen were monitored daily, while the other variables were measured weekly. Most productive variables were significantly influenced by both culture system and stocking density with significantly higher values of daily weight gain, total weight gain and total length for fish kept in DWE 20. However, only minor differences were observed within the BFT system. With the exception of the toxic nitrogen compounds (NH₄⁺ and NO₂^?), all the other water quality parameters were within the acceptable ranges for the cultivation of tropical fish. Microorganisms started to settle from the first week. A total of 23 genera were present, the most outstanding of which being seven genera of ciliates and three rotifers, rhizopods and chlorophytes. In conclusion, both systems BFT and DWE are useful for increasing the production of P. brachypomus in captivity. Additionally, the BFT system can potentially be applied for growing juveniles of this specie in regions with scarce water resources.     

Seeding nets with neutral spores of the red alga Porphyra umbilicalis (L.) Kützing for use in integrated multi-trophic aquaculture (IMTA)

Nets in traditional Porphyra mariculture are seeded with conchospores derived from the conchocelis phase, and spend a nursery period in culture tanks or calm coastal waters until they reach several centimeters in length. Some species of Porphyra can regenerate the foliose phase directly through asexual reproduction, which suggests that the time, infrastructure, and costs associated with conchocelis culture might be avoided by seeding nets with asexual spores. Here, we present work from a short-term mariculture study using nets seeded with asexual spores (neutral spores) of a native Maine species of Porphyra. Porphyra umbilicalis (L.) Kützing was selected for this proof of concept research because of its reproductive biology, abundance across seasons in Maine, and evidence of its promise as a mariculture crop. We studied the maturation, release, and germination of the neutral spores to develop an appropriate seeding protocol for nets, followed by development of a nursery raceway to provide an easily manipulated environment for the seeded nets. Neutral spores were produced throughout the year on the central Maine coast; however, there was a temporal variability in the number and survival of released neutral spores, depending upon thallus position in the intertidal zone. Small thalli were strictly vegetative, but most thalli reproduced by neutral spores; sexual reproduction was absent. Neutral spores germinated quickly at 10 and 15 °C, but germination was delayed at 5 °C. Unlike some algal zygotes and spores, neutral spores of P. umbilicalis required light to germinate; however, irradiances of 25 and 100 μmol photons m^− 2 s^− 1 were equally sufficient for germination. Rafts of seeded nets were deployed in Cobscook Bay, Maine, at two distances from salmon aquaculture pens and at a control site on a nearby, fallow aquaculture site (no salmon). There was no difference in nitrogen content of harvested thalli; however, both the density and the surface area of harvested thalli were different among the sites. The possible causes of these differences are discussed in the context of potential use of P. umbilicalis in IMTA.     

Effect of the data family structure,tank replication and the statistical model,on the estimation of genetic parameters for body weight at 28 days of age in the Pacific white shrimp (Penaeus (Litopenaeus) vannamei Boone, 1931)

Real and simulated data sets were analysed to estimate the effect of data structure (i.e. the number of dams mated to one sire and the number of tanks per dam) and the model used for analysis on the bias of genetic parameter estimates of the square root of 28‐day body weight (BW28) in Penaeus vannamei. Estimated parameters used were 0.13 for the heritability (h²); 0.16 for the proportion of the variance of the maternal and common environmental effects (c²); 0.15 for the proportion of the tank effect variance (t²) and 0.56 for the proportion of the environmental variance (e²). Total variance for the BW28 was 2.36 mg. Simulated data involved a total of 9000 sires and 1 444 000 offspring. Exclusion of maternal and common environmental effects inflated estimates of heritability both in real and simulated data. Exclusion of tank effects from the model inflated the estimates of heritability in real, but not in simulated data, indicating the presence of non‐random effects affecting individual tanks. We conclude that replication of dams per sire is necessary for obtaining unbiased estimates of heritability. Use of replicated tanks may help in reducing overestimation of heritability if tank and genetic effects are confounded.