Cyto-nuclear discordance in the genetic relationships among Tunisian fig cultivars (Ficus carica L.): Evidence from non coding trnL–trnF and ITS regions of chloroplast and ribosomal DNAs

Genetic diversity studies were conducted to evaluate intra-specific relationships in Tunisian fig (Ficus: Moraceae) using sequences of the ITS regions of nuclear ribosomal DNA and the chloroplast non-coding region trnL–trnF (trnL intron, and trnL [UAA]–exon–trnF [GAA] intergenic spacer). All data sets suggest that the sequences obtained showed variations either on their lengths or on their nucleotide compositions. The mean size of these nuclear and cytoplasmic non-coding regions is 697.5 and 1035 base pairs for ITS and trnL–trnF chloroplast DNA, respectively. Our results suggest that the substitution rate estimated for the ITS sequences of nuclear DNA is greater than the one unregistered for the non-coding regions of chloroplast DNA. Therefore, chloroplast DNA shows more homoplasy than the nuclear ribosomal DNA. In fact, the consistency (CI) and retention (RI) indexes calculated for nuclear and cytoplasmic DNAs show values of 0.420 and 0.490 for chloroplast DNA and 0.573 and 0.387 for ribosomal DNA, respectively. The nuclear DNA has more resolution of genetic relationships between cultivars. In addition, the result suggests that the cultivars studied are clustered independently from their geographical origin and the male trees did not thoroughly diverge from the common figs. The discordance between chloroplast and the nuclear topology is revealed. The lack of congruence between the two data sets may be a result of hybridization or introgression. Our result showed that the nuclear and cytoplasmic sequences are useful for germplasm discrimination as well as for investigation of patterns of variation in fig.     

Genetic diversity in Acorus calamus L. as revealed by RAPD markers and its relationship with β-asarone content and ploidy level

β-Asarone content in Acorus calamus is a paramount issue because it limits the usage of plant for medicinal purpose. In the present study A. calamus L. accessions based on RAPD marker, ploidy level and β-asarone content were characterized and correlated on the basis of β-asarone content/ploidy level. Of the 40 random primers used, 6 primers generated polymorphism. Genetic relatedness among accessions evaluated by a similarity matrix based on Dice's coefficient ranged from 0.72 to 0.97. A phenetic dendrogram based on UPGMA analysis grouped accessions into two clusters. A. calamus L. accessions were found to be triploid and tetraploid and their β-asarone content was found in two ranges 6.92–8.0% and 73–88%. The study clustered the accessions as per their ploidy level, β-asarone content and geographical locations. This study would have extensive application in quality control of raw materials.     

Functional characterization of watermelon (Citrullus lanatus L.) EST–SSR by gel electrophoresis and high resolution melting analysis

The present work was conducted to characterize the functionality of 257 watermelon EST–SSR primer pairs for their PCR amplification and polymorphisms. EST–SSR markers were tested on DNA sample panels of six watermelon cultigens and two related species of Citrullus lanatus var. citroides and Citrullus colocynthis based on agarose gel electrophoresis and high resolution melting (HRM) analysis. Successful PCRs were shown for 240 primer pairs (79%), and 173 primer pairs (67%) were polymorphic in a watermelon DNA sample panel on agarose gel electrophoresis. In addition, HRM analysis of 24 EST–SSR markers that were monomorphic on agarose gel separation identified an additional 19 polymorphic markers, indicating that HRM is an efficient tool for the rapid screening of sequence variations and allele discrimination. In the assessment of genetic relationships, six watermelon cultivars were closely related together (0.91–0.97) and demonstrated a narrow genetic base in the watermelon genetic pool. A high level of genetic dissimilarity (0.36–0.97) was shown between watermelon species and other related species. Marker transferability to melon species (Cucumis melo L.) was examined by cross-species PCR amplification and genetic diversity assessment in eight melon cultigens. Of the 257 EST–SSR primer pairs, 79 (32.9%) showed successful PCR amplification from melon DNA samples. A dendrogram of the genetic relationship based on 22 EST–SSR markers showed a clear classification of melon genotypes in accordance to fruit characteristics. The EST–SSR markers characterized in this study will contribute to diverse genomic investigations and breeding efforts, including comparative genome mapping, marker-assisted selection, and DNA fingerprinting for genetic diversity and cultivar identification in many cucurbit crops.     

Effects of farmyard manure on soil organic carbon stock,the pattern of fertility build-up,and plant growth in ‘Mallika’ mango (Mangifera indica L.)

Summary

A field experiment was conducted on mango (Mangifera indica L.) to study the effects of farmyard manure (FYM) on soil organic carbon (SOC) content and on the build-up of fertility over three growing seasons (2006–2007, 2007–2008, and 2008–2009) at Bhubaneswar, Orissa, India. Five treatments, including the application of FYM at 5.0 kg plant^–1, 7.5 kg plant^–1, or 10.0 kg plant^–1, the recommended dose of a chemical fertiliser (RDF; N:P:K=75:20:60), and a non-fertilised control, were evaluated in a randomised block design. The results indicated that SOC contents increased significantly in the FYM-treated plots. The highest SOC density (554 g m^–2) and stock (5.55 Mg ha^–1) were recorded in the treatment with FYM at 10 kg plant^–1. The rate of increase in SOC density was highest (193 g m^–2 year^–1) with FYM at 10 kg plant^–1, and lowest in the untreated control (15 g m^–2 year^–1). Regular addition of FYM had a positive effect on the build-up of soil fertility. However, the greatest increases in soil N, P, K contents were in the 7.5 kg plant^–1 FYM treatment (means = 319.9, 19.1, and 270.8 kg ha^–1 for N, P, K, respectively). Farmyard manure significantly influenced the growth parameters of mango trees over the three seasons. There was a positive and linear relationship between increasing rates of application of FYM and trunk cross-sectional area.     

The genetic variability,inheritance and inter-relationships of ascorbic acid, β-carotene,phenol and anthocyanin content in strawberry (Fragaria × ananassa Duch.)

Strawberry (Fragaria × ananassa Duch.) is rich source of dietary antioxidants, minerals and nutrients. Dietary antioxidants have been known as beneficial for enhancing the fitness, preventing certain diseases and even mitigating the effects of ageing. The objectives of the present study were to determine variability and inheritance of antioxidants, to identify antioxidant rich and productive genotypes, and to suggest suitable breeding approaches. The genotypes, namely Ofra, Chandler, Festival and Camarosa showed higher concentrations of dietary antioxidants and therefore could be useful in future breeding. Results indicate that the effect of the genotypes on antioxidant contents is stronger than that of the environment. The high heritability (>80%) and low genetic advance as percentage of mean (<40%) for ascorbic acid and β-carotene contents could be improved by heterosis breeding. However, selection and hybridization would be effective tools to enhance the phenols and anthocyanin content, and yield potential as these traits showed high heritability (>80%) and high genetic advance as percentage of mean (>40%). Positive direct effect on fruit yield was highest for phenol content (0.609) which is also fairly close to its correlation coefficient (0.765) indicating that a direct selection based on phenol content would be most effective and that the phenol content could be used as a reliable biochemical marker to identify the productive genotypes having higher amounts of dietary antioxidants. The information could also be used for developing antioxidant rich cultivars, i.e. ‘Breeding Strawberry for High Antioxidants’.     

Effect of calcium based fertilization on dried fig (Ficus carica L. cv. Sarılop) yield and quality

Fig tree mainly spread in regions where Mediterranean climate prevails can be grown over a wide range of soils without any significant deficiency or toxicity symptoms of plant nutrients. Surveys revealed that, however, quality is highly affected by nutrition especially N, K and Ca in fig production for commercial drying. This research work was initiated based on few studies performed on fertilization of fig. The experiment was performed between 2000 and 2002 in three fig orchards of cv. Sar?lop (syn. Calimyrna) in Ayd?n-Turkey. Trees received seven types of fertilization as (i) untreated control; (ii) NPK (430 g N, 200 g P₂O₅ and 430 g K₂O per tree); (iii) NPK + 70 g Ca; (iv) NPK + 140 g Ca; (v) NPK + 280 g Ca; (vi) NPK + 420 g Ca and (vii) N + 420 g Ca, Ca(NO₃)₂ used as the Ca source. Tested fertilizer applications showed significant differences in respect to yield and quality of fig. Basic NPK fertilization with additional 280 g Ca treatment increased overall quality by reducing the number of fruit with ostiole-end crack and sunscald. Results showed that applied fertilizers exerted significantly in reduction of cull ratio and could alleviate the negative impact of yearly drought conditions.     

Determination of Pesticide Residues in Apricot (<Emphasis Type="Italic">Prunus armeniaca</Emphasis> L.) Grown at Good Agricultural Practices (GAPs) by LC-MS/MS and GC-MS

Good Agricultural Practices (GAPs) includes agricultural techniques which environmentally-conscious, is not harmful to human and animal health, target protection of natural resources, provide traceability and food security. With these kinds of production techniques, it is aimed at agricultural production which is socially viable, economically profitable and sustainable. In this study conducted under good agricultural practices, pesticide residues in apricot fruit were investigated. The experiment was set up to have 3 replications and 15 trees in each replicate, according to randomized trial design. From the trees included in the experiment, necessary samples were taken at the harvest time and analyzes were carried out. In this study, pesticide residue levels were determined in fruit extracts with high-precision analytical instruments such as LC-MS/MS and GC-MS. A total of 385 pesticide active substances were analyzed in LC-MS/MS and 101 pesticide active substances in GC-MS in fruit extracts. In this research carried out in 2014 and 2015, samples of both years were not found to be detectable to the tolerance values of Turkish Food Codex (TFC).