Parameter estimation for carcass traits including growth information of Simmental beef cattle using restricted maximum likelihood with a multiple-trait model.

(Co)variance component estimates were computed for retail cuts per day of age (kilograms per day), cutability (percentage of carcass weight), and marbling score (1 through 11) using a multiple-trait sire model. Restricted maximum likelihood estimates of (co)variance components were obtained via an expectation-maximization algorithm. Carcass data consisted of 8,265 progeny records collected by U.S. Simmental producers. Growth trait information (birth weight, weaning weight, and[or] postweaning gain) for those progeny with carcass data and an additional 5,405 contemporaries formed the complete data set for analysis. A total of 420 sires were represented. Three models differing in number of traits were investigated: 1) carcass traits with growth traits, 2) carcass traits only, and 3) single trait. The final models did not include postweaning gain because of convergence problems. Parameter estimates for all three models were essentially the same. Heritability estimates were .30, .18, and .23 for retail cuts per day, cutability, and marbling score, respectively. Correlations between growth and carcass traits were low except for those with retail cuts per day, which were moderate and positive. The additional information gained by adding growth traits to the carcass-traits-only evaluation lowered prediction error variances most for retail cuts per day. Little change in prediction error variances was found for cutability and marbling score. Inclusion of growth traits in future sire evaluations for carcass traits will benefit the evaluation of retail cuts per day but have considerably less effect on cutability and marbling score.     

Association of a single nucleotide polymorphism in ribosomal protein L27a gene with marbling in Japanese Black beef cattle

Marbling, defined by the amount and distribution of intramuscular fat, is an economically important trait of beef cattle in Japan. The c2‐11#2 expressed sequence tag (EST) has been previously shown to possess expression difference in musculus longissimus muscle between low‐marbled and high‐marbled steer groups, and to be located within genomic region of a quantitative trait locus for marbling. Thus, the ribosomal protein L27a (RPL27A) gene containing the c2‐11#2 EST sequence was considered as a positional candidate for the gene responsible for marbling. In the present study, a single nucleotide polymorphism (SNP) in the promoter region of the RPL27A, referred to as g.3109537C>T, was detected between the 2 steer groups. The SNP was associated with the predicted breeding value for beef marbling standard number by the analyses using Japanese Black beef cattle population. The effect of genotypes of the SNP on the predicted breeding value for subcutaneous fat thickness was not statistically significant. These findings suggest that the RPL27A SNP may be useful for effective marker‐assisted selection to increase the levels of marbling in Japanese Black beef cattle.     

Genetic parameters for carcass traits of field progeny and their relationships with feed efficiency traits of their sire population for Japanese Black cattle

Genetic parameters for carcass traits of 1774 field progeny (1281 steers and 493 heifers), and their genetic relationships with feed efficiency traits of their sire population (740 bulls) were estimated with REML. Feed efficiency traits included feed conversion ratio (FCR) and residual feed intake (RFI). RFI was calculated by the residual of phenotypic (RFI_phe) and genetic (RFI_gen) regression from the multivariate analysis of feed intake on metabolic weight and daily gain. Progeny traits were carcass weight (CWT), rib eye area (REA), rib thickness (RBT), subcutaneous fat, yield estimate (YEM), marbling score (MSR), meat quality grade, meat color, fat color, meat firmness and meat texture. The estimated heritability for CWT (0.70) was high and heritabilities for all the other traits were moderate (ranged from 0.32 to 0.47), except for meat and fat color and meat texture which were low (ranged from 0.02 to 0.25). The high genetic correlation (0.62) between YEM and MSR suggests that simultaneous improvement of high carcass yield and beef marbling is possible. Estimated genetic correlations of RFI (RFI_phe and RFI_gen) of sires with CWT (− 0.60 and − 0.53) and MSR (− 0.62 and − 0.50) of their progeny were favorably negative indicating that the selection against RFI of sires may have contributed to produce heavier carcass and increase in beef marbling. The correlated responses in CWT, REA and RBT of progeny were higher to selection against RFI than those to selection against FCR of sires. This study provides evidence that selection against RFI is preferred over selection against FCR in sire population for getting better correlated responses in carcass traits of their progeny.     

肉用西门塔尔牛与和牛杂交群体的肉品质分析

本研究旨在对肉用西门塔尔牛与杂交和牛两试验群体进行肉质性状比较,以期为肉品质性状遗传机制剖析及优质肉牛培育提供理论指导。收集肉用西门塔尔牛与杂交和牛两试验群体肉质性状表型数据,包括眼肌面积、剪切力、系水力、pH、肉色、脂肪颜色和大理石花纹等指标,进行相关性及差异性分析,从而综合评价两群体的肉品质。结果显示,两群体的脂肪颜色、系水力及剪切力呈现两两正相关;肉色与脂肪颜色、pH呈正相关,且肉色与pH呈显著相关（P < 0.05）,而系水力与pH、肉色和大理石花纹呈负相关。在两试验群体间,和牛杂交群体的大理石花纹、眼肌面积、pH性状表现为极显著优于肉用西门塔尔牛（P < 0.01）。从性别比较来看,肉用西门塔尔牛母牛在大理石花纹、pH、剪切力等性状上极显著或显著优于公牛（P < 0.01;P < 0.05）;而和牛杂交群体母牛的肉色和剪切力性状表现为显著或极显著高于公牛（P < 0.05;P < 0.01）。总体而言,和牛杂交群体的肉质性能优于肉用西门塔尔牛;群体内比较表明,肉用西门塔尔牛群体母牛肉质性能优于公牛,而和牛杂交群体母牛肉质性能低于公牛。     

Accounting for numbers of expressions of specific genotypes using a modified gene-flow method

The objective of this study was to develop a modified discounted gene-flow method and calculate numbers of cumulative discounted expressions (CDE) and value of using a Japanese Black cattle bull carrying specific alleles of interest. The discounted gene-flow method was modified to consider not only parent's genotypes but also the allele frequency in the herd. Input parameters representing a typical situation in a Japanese Black cattle herd were used to calculate the CDE and the value of using sires genotyped for recessive genes assuming biallelic loci (A and a) and a herd at Hardy–Weinberg equilibrium. The quantitative trait assumed was marbling and the effect of genotype aa was 1 Beef Marbling Standards (BMS) above that of an animal with either genotype Aa or AA. The effects of gene frequency and discount and survival rates on the CDE were determined for different genotypes of sires. Benefits from using either aa sires or Aa sires above that of using unknown sires at various gene frequencies were also determined. The CDE of aa sires were larger than those of Aa sires under all gene frequencies. The differences in the CDE between aa and Aa sires ranged from 34% at gene frequency of 0.7 to 71% at gene frequency of 0.01. An increase in the discount rates and a decrease in survival rates were associated with a decrease in expressions in cases using aa and Aa sires. The benefits of using aa sires were high when the gene frequency in the herd was 0.5. The benefit of aa sires were approximately 3023 yen more than that for unknown sires in the population when the gene frequency was 0.5. At gene frequencies higher than 0.5, use of Aa sires was not beneficial. This study has demonstrated how the gene frequencies in the herd and the genotypes of sires are critical in determining the benefits of using single recessive gene in the Japanese Black cattle.     

Relationship of the bovine growth hormone gene to carcass traits in Japanese black cattle.

The bovine growth hormone gene (bGH) possesses three haplotypes, A, B and C, that differ by amino acid mutations at positions 127 and 172 in the fifth exon: (leucine 127, threonine 172), (valine 127, threonine 172) and (valine 127, methionine 172) respectively. The correlation between meat quality or carcass weight and these haplotypes was investigated in Japanese black cattle. Altogether, 940 bGH haplotypes were compared with respect to six carcass traits: carcass weight, longissimus muscle area, rib thickness, subcutaneous fat thickness, beef marbling score and beef colour. The frequency of the B haplotype was higher (0.421) than that of A (0.269) and C (0.311). High carcass weight and low beef marbling were associated with haplotype A (p < 0.05 and p < 0.01 respectively), whereas beef marbling was increased by haplotype C (p < 0.05). Estimated regression coefficient of the A haplotype substitution effect for carcass weight and beef marbling score were 5.55 (13.1% of the phenotypic SD) and -0.31 (17.0%) respectively. That of the C haplotype for beef marbling score was 0.20 (11.0%). The other traits showed no relationship to the haplotypes examined. The results of this investigation suggest that information pertaining to bGH polymorphisms in Japanese black cattle could be used to improve the selection of meat traits.     

Effect of direct and indirect selection criteria for efficiency of gain on profitability of Japanese Black cattle selection strategies

The objective of this study was to determine the effect of use of residual feed intake (RFI) and the blood concentration of IGF-I (IGF) as selection criteria for efficiency of gain on profitability of Japanese Black cattle selection strategies with restricted test capacity. A breeding objective that integrated the cow-calf and feedlot segments was considered. Selection strategies were defined that differed in whether information on IGF and RFI during performance testing (RFIpt) was used to make selection decisions and in the number of animals measured for IGF. In all strategies, sires were selected from the proportion chosen during the first selection stage (performance testing), modeling a 2-stage selection process. The effect on genetic gain and profitability of variations in test capacity, of the genetic correlations of IGF with marbling score (MS) and RFIpt, and nonzero economic values for and, hence, inclusion of RFI of the cow and feedlot animals in the breeding objective was examined. Additional genetic gain and profitability were generated when information on IGF concentration and RFIpt in the performance-tested young bulls was included in the selection criteria. Profit per cow was optimal when measurement of IGF and RFIpt were incorporated together in the selection index. Increasing test capacity resulted in an increase in genetic gain in all strategies, and profit per cow was optimal in all strategies when 900 places were available for performance testing. Profit per cow was more sensitive to changes in the genetic correlation between IGF and MS than between IGF and RFIpt, especially when more animals were measured for IGF, or else the favorable relationship between IGF and MS had no significant effect on profit per cow. Additional genetic gain and profitability were generated in each strategy when RFI of the cow and feedlot animals were included in the breeding objective with nonzero economic values. These results may be used to provide guidance to Japanese Black cattle breeders and, in the absence of more breed-specific information, may also have application in other Japanese beef breeds.     

The value of using DNA markers for beef bull selection in the seedstock sector

The objective of this study was to estimate the value derived from using DNA information to increase the accuracy of beef sire selection in a closed seedstock herd. Breeding objectives for commercial production systems targeting 2 diverse markets were examined using multiple-trait selection indexes developed for the Australian cattle industry. Indexes included those for both maternal (self-replacing) and terminal herds targeting either a domestic market, where steers are finished on pasture, or the export market, where steers are finished on concentrate rations in feedlots and marbling has a large value. Selection index theory was used to predict the response to conventional selection based on phenotypic performance records, and this was compared with including information from 2 hypothetical marker panels. In 1 case the marker panel explained a percentage of additive genetic variance equal to the heritability for all traits in the breeding objective and selection criteria, and in the other case to one-half of this amount. Discounted gene flow methodology was used to calculate the value derived from the use of superior bulls selected using DNA test information and performance recording over that derived from conventional selection using performance recording alone. Results were ultimately calculated as discounted returns per DNA test purchased by the seedstock operator. The DNA testing using these hypothetical marker panels increased the selection response between 29 to 158%. The value of this improvement above that obtained using traditional performance recording ranged from $89 to 565 per commercial bull, and $5,332 to 27,910 per stud bull. Assuming that the entire bull calf crop was tested to achieve these gains, the value of the genetic gain derived from DNA testing ranged from $204 to 1,119 per test. All values assumed that the benefits derived from using superior bulls were efficiently transferred along the production chain to the seedstock producer incurring the costs of genotyping. These results suggest that the development of greater-accuracy DNA tests for beef cattle selection could be beneficial from an industry-wide perspective, but the commercial viability will strongly depend on price signaling throughout the production chain.     

Progeny testing sires selected by independent culling levels for below-average birth weight and high yearling weight or by mass selection for high yearling weight.

Breeding values of sires resulting from selection either for reduced birth weight and increased yearling weight (YB, n = 8) or for increased yearling weight alone (YW, n = 9) were compared with each other and with sires representative of the population before selection began (BS, n = 12) using progeny testing. Reference sires (n = 6) connected these Line 1 sires with the Hereford international genetic evaluation. Thirty-five sires produced 525 progeny that were evaluated through weaning. After weaning, 225 steer progeny were individually fed, slaughtered, and carcass data collected. Data were analyzed using restricted maximum likelihood procedures for multiple traits to estimate breeding values for traits measured on the top-cross progeny while simultaneously accounting for selection of the sires. Results of the progeny test substantiate within-line results for traits upon which sires were selected. Breeding values for gestation length were greater in YB sires than in YW sires and were unchanged relative to BS sires. Breeding values for growth rate and feed intake for the YB and YW sires were greater than for BS sires. Predicted breeding values for indicators of fat deposition tended to be greater in YB sires and less in YW sires relative to BS sires, although YB and YW sires had similar breeding values for marbling score. Selection based on easily and routinely measured growth traits, although achieving the intended direct responses, may not favorably affect all components of production efficiency. Further, divergence of selection lines may not be easily anticipated from preexisting parameter estimates, particularly when selection is based on more than one trait.     

Two-stage selection strategies utilizing marker-quantitative trait locus information and individual performance.

Short- and long-term response to marker-assisted selection in two stages was studied using a stochastic simulation of a closed nucleus herd for beef production. First-stage selection was carried out within families based on information at a fully additive quantitative trait locus (QTL). Second-stage selection strategies were based on 1) individual phenotype, 2) individual phenotype precorrected for QTL, 3) a selection index incorporating phenotype and QTL information, 4) a standard animal model BLUP, and 5) a selection index incorporating marker-QTL information and standard animal model BLUP on records precorrected for QTL. All strategies were efficient in moving the favorable allele at the QTL to fixation, but they differed in the time to reach fixation. Mass selection was less efficient in changing allele frequencies than BLUP. Discounted accumulated response, accounting for the time response was realized and inflation rate, was proposed to rank strategies and to elude the conflict between short- and long-term response in marker-assisted selection. Discounted accumulated response at a time horizon of 20 yr for alternative two-stage selection strategies was compared with conventional BLUP carried out in second stage only. Within-family selection increased discounted accumulated response by more than 11% using Strategy 4 and by up to 12% using Strategy 5 at an inflation rate of 2%. The percentage increase in response was less for highly heritable traits and when the proportion of additive variance explained by the QTL was small. Strategy 5 gave larger response with reduced inbreeding. This strategy also resulted in the lowest cost-benefit ratio, requiring less genotyping per unit of response. Cost-benefit ratio for discounted genotyping and for discounted in vitro production of embryos for traits with low heritability was two to four times that for traits with high heritability. The use of first-stage selection slightly increased the level of inbreeding for both mass (Strategy 1) and BLUP selection (Strategies 4 and 5).     

影响肉牛大理石花纹形成的主要因素

决定大理石花纹水平的肌内脂肪(IMF)含量是影响牛肉感官质量(包括嫩度、多汁性、风味和颜色)的重要因素之一。肉牛体内IMF的形成始于受孕后6个月左右,并在动物的一生中持续增长。大理石花纹的沉积受到品种、遗传、营养和管理(包括去势、断奶年龄)等多方面因素的影响。本文综述了肉牛大理石花纹沉积的主要影响因素,为品种选择以及在肉牛生长发育过程中有效调整饲料、优化营养、因地制宜改善管理提高牛肉品质提供有效依据。     

Comparison of two- and three-way rotational crossing, beef x beef and beef x Brown Swiss composite breed production: postweaning growth and carcass traits

Data collected from steer and bull progeny, fed to a constant final feedlot weight over 11 yr, were used to estimate heterosis in post-weaning feedlot growth and carcass traits in two-way and three-way rotational crossing systems and a breed composite from crossing Hereford, Angus and Charolais breeds. Steer and bull progeny from matings of beef x Brown Swiss-cross sires and dams also were compared with the straight beef breeds and beef crosses. Growth traits evaluated were initial weight on test, 112-d weight, total feedlot average daily gain and total days from initial to final weight. Carcass traits included hot carcass weight, dressing percentage, rib eye area, 12th-rib fat thickness, kidney, pelvic and heart fat, yield grade and marbling score. Heterosis estimates for calves of all crossing systems were significant for initial and 112-d weight and for saving of days in the feedlot, but not for average daily feedlot gain. Heterosis estimates were small and nonsignificant for most carcass traits except for fat traits in specific crosses. Males from Hereford and Angus sires mated to Angus x Hereford dams had higher (P less than .10) backfat than did the parental average. Male progeny from Charolais ranked higher (P less than .10 to P less than .01) than calves from Hereford and Angus sires for most growth traits. Progeny from Charolais sires were more desirable (P less than .10 to P less than .01) for traits related to cutability, but they had less (P less than .05 to P less than .01) marbling than calves of Angus sires.(ABSTRACT TRUNCATED AT 250 WORDS)     

Interval mapping of growth quantitative trait loci in Japanese Black beef cattle using microsatellite DNA markers and half-sib regression analysis

A confirmatory scan for the regions of bovine chromosome 1 segregating the quantitative trait loci (QTL) influencing birthweight, weaning weight, yearling weight, and preweaning and postweaning average daily gains was performed by genotyping half‐sib progeny of four Japanese Black sires using microsatellite DNA markers. Data were analyzed by generating an F‐statistic every 1 cM on a linkage map by the regression of phenotype on the probabilities of inheriting an allele from the sire after adjusting for the fixed effects of sire, sex, parity and season of birth as well as age as a covariate. Permutation tests at chromosome‐wide significance thresholds were carried out over 10 000 iterations. A significant QTL for birthweight at 114 cM was detected in the sire 2 family. This identification of a birthweight QTL in Japanese Black cattle may be useful for the implementation of marker‐assisted selection.     

Quantitative trait loci affecting growth and carcass composition of cattle segregating alternate forms of myostatin

The effects of the bovine myostatin gene on chromosome 2 on birth and carcass traits have been previously assessed. The objective of this study was to identify additional quantitative trait loci (QTL) for economically important traits in two families segregating an inactive copy of myostatin. Two half-sib families were developed from Belgian Blue x MARC III (n = 246) and Piedmontese x Angus (n = 209) sires. Traits analyzed were birth (kg) and yearling weight (kg); hot carcass weight (kg); fat depth (cm); marbling score; longissimus muscle area (cm2); estimated kidney, pelvic, and heart fat (%); USDA yield grade; retail product yield (%); fat yield (%); and wholesale rib-fat yield (%). Meat tenderness was measured as Warner-Bratzler shear force at 3 and 14 d postmortem. The effect of myostatin on these traits was removed by using phase information obtained from the previous study with six microsatellite markers flanking the locus. Selective genotyping was done on 92 animals from both families to identify genomic regions potentially associated with retail product yield and fat depth, using a total of 150 informative markers in each family. Regions in which selective genotyping indicated the presence of QTL were evaluated further by genotyping the entire population and additional markers. For the family with Belgian Blue inheritance (n = 246), a significant QTL for birth and yearling weight was identified on chromosome 6. Suggestive QTL were identified for longissimus muscle area and hot carcass weight on chromosome 6 and for marbling on chromosomes 17 and 27. For the family with Piedmontese inheritance (n = 209), suggestive QTL on chromosome 5 were identified for fat depth, retail product yield, and USDA yield grade and on chromosome 29 for Warner-Bratzler shear force at 3 and 14 d postmortem. Interactions suggesting the presence of QTL were observed between myostatin and chromosome 5 for Warner-Bratzler shear force at 14 d postmortem and between myostatin and chromosome 14 for fat depth. Thus, in families segregating an inactive copy of myostatin in cattle, other loci influencing quantitative traits can be detected. These results are the initial effort to identify and characterize QTL affecting carcass and growth traits in families segregating myostatin.     

Phenotypic ranges and relationships among carcass and meat palatability traits for fourteen cattle breeds, and heritabilities and expected progeny differences for Warner-Bratzler shear force in three beef cattle breeds

Carcass and Warner-Bratzler shear force (WBSF) data from strip loin steaks were obtained from 7,179 progeny of Angus, Brahman, Brangus, Charolais, Gelbvieh, Hereford, Limousin, Maine-Anjou, Red Angus, Salers, Shorthorn, Simbrah, Simmental, and South Devon sires. Trained sensory panel (TSP) evaluations were obtained on 2,320 steaks sampled from contemporary groups of progeny from one to five sires of each breed. Expected progeny differences for marbling and WBSF were developed for 103 Simmental sires from 1,295 progeny, 23 Shorthorn sires from 310 progeny, and 69 Hereford sires from 1,457 progeny. Pooled phenotypic residual correlations, including all progeny, showed that marbling was lowly correlated with WBSF (-0.21) and with TSP overall tenderness (0.18). The residual correlation between WBSF and TSP tenderness was -0.68, whereas residual correlations for progeny sired by the three Bos indicus breeds were only slightly different than for progeny sired by Bos taurus breeds. The phenotypic range of mean WBSF among sires across breeds was 6.27 kg, and the phenotypic range among breed means was 3.93 kg. Heritability estimates for fat thickness, marbling score, WBSF, and TSP tenderness, juiciness, and flavor were 0.19, 0.68, 0.40, 0.37, 0.46, and 0.07, respectively. Ranges in EPD for WBSF and marbling were -0.41 to +0.26 kg and +0.48 to -0.22, respectively, for Simmentals; -0.41 to +0.36 kg and 0.00 to -0.32, respectively, for Shorthorns; and -0.48 to +0.22 kg and +0.40 to -0.24, respectively, for Herefords. More than 20% of steaks were unacceptable in tenderness. Results of this study demonstrated that 1) selection for marbling would result in little improvement in meat tenderness; 2) heritability of marbling, tenderness, and juiciness are high; and 3) sufficient variation exists in WBSF EPD among widely used Simmental, Shorthorn, and Hereford sires to allow for genetic improvement in LM tenderness.     

Effects of production circumstances on expected responses for growth and carcass traits to selection of bulls in Japan.

Economic values of growth and carcass traits in Japanese beef cattle for production systems with various types of integration of levels/ stages (cow-calf and feedlot segments and the integrated system) and production circumstances (including 20% higher genetic levels of the traits, management, and economic alternatives) were used to examine responses to selection. Discounted economic values with interest rates of 0, 4.2 (Japanese average), and 8.4% were obtained to investigate the effect of discounting on selection efficiency. Traits considered were daily gain in the feedlot, marbling score, birth weight, weaning weight, and mature weight. The effects of discounting were small. Correlated responses to selection were not always economically favorable for all situations. Selecting bulls for the base situation (i.e., the typical biological and economic conditions for the production of Japanese Black cattle) resulted in negative genetic changes in weaning weight and mature weight in the feedlot segment. Higher genetic levels of daily gain and weaning weight affected efficiency of selection. Although effects of management and economic alternatives on responses to selection were generally small, lighter market weight influenced responses to selection. The results indicate that predicted correlated responses to selection are sensitive to production systems and some production circumstances.     

Comparison of genetic gains per year for carcass traits among breeding programs in the Japanese Brown and the Japanese Black cattle

The breeding program for beef cattle in Japan has changed dramatically over 4 decades. Visual judging was done initially, but progeny testing in test stations began in 1968. In the 1980s, the genetic evaluation program using field records, so-called on-farm progeny testing, was first adopted in Oita, Hyogo, and Kumamoto prefectures. In this study, genetic trends for carcass traits in these 3 Wagyu populations were estimated, and genetic gains per year were compared among the 3 different beef cattle breeding programs. The field carcass records used were collected between 1988 and 2003. The traits analyzed were carcass weight, LM area, rib thickness, s.c. fat thickness, and beef marbling standard number. The average breeding values of reproducing dams born the same year were used to estimate the genetic trends for the carcass traits. For comparison of the 3 breeding programs, birth years of the dams were divided into 3 periods reflecting each program. Positive genetic trends for beef marbling standard number were clearly shown in all populations. The genetic gains per year for all carcass traits were significantly enhanced by adopting the on-farm progeny testing program. These results indicate that the on-farm progeny testing program with BLUP is a very powerful approach for genetic improvement of carcass traits in Japanese Wagyu beef cattle.     

Assessing the association of single nucleotide polymorphisms at the thyroglobulin gene with carcass traits in beef cattle

The objective of this study was to assess the association of SNP in the thyroglobulin gene, including a previously reported marker in current industry use, with marbling score in beef cattle. Three populations, designated GPE6, GPE7, and GPE8, were studied. The GPE6 population sampled breeds that could be used as alternative germplasm sources in beef cattle production, including Wagyu, Swedish Red and White, Friesian, and Norwegian Red. The GPE7 population sampled 7 popular beef cattle breeds used in temperate climates of the United States: Angus, Charolais, Gelbvieh, Hereford, Limousin, Red Angus, and Simmental. The GPE8 population sampled Bos indicus-influenced breeds used in subtropical regions of the country and subtropical and tropical regions of the world, including Beefmaster, Bonsmara, Brangus, and Romosinuano. Evaluation of 6 SNP in the thyroglobulin gene, including 5 newly described variations, showed no association (P > 0.10) with marbling score in these populations, except a tendency (P < 0.10) for an association with the previously described marker in GPE6. Closer examination of the GPE6 data revealed that the source of the tendency was an association (P < 0.02) with marbling in animals of Wagyu inheritance. Animals having Wagyu background and inheriting the TT genotype had a greater marbling score (599 +/- 20) than those inheriting the CC (540 +/- 10) or the CT (541 +/- 11) genotype. No association was detected with any other carcass trait for this marker in the 3 populations. Furthermore, none of the 5 newly described markers in the gene displayed an association with marbling score. The data indicate that markers at the thyroglobulin gene may be a useful predictor of marbling performance for producers raising Wagyu-based cattle. Although associations with marbling score in the remaining populations were not large or significant, the TT genotype had the numerically greatest marbling score in each population.     

Record keeping,genetic selection,educational experience and farm management effects on average milk yield per cow,milk fat percentage,bacterial score and bulk tank somatic cell count of dairy farms in the Central region of Thailand

A study was conducted to estimate the record keeping, genetic selection, educational, and farm management effects on average milk yield per cow (AYC), milk fat percentage, bacterial score, and bulk tank somatic cell count (BTSCC) of dairy farms in the central region of Thailand. Farms were located in the provinces of Saraburi and Nakhon Ratchisima and were members of the Muaklek dairy cooperative. Records from individual animals were unavailable. Thus, farm records of milk yield, milk fat percentage, bacterial score, and BTCCC were collected from July 1, 2003 through June 30, 2006. Additional record keeping, genetic selection, education, and farm management information was collected through a questionnaire in May of 2006. Data from the Muaklek dairy cooperative and the questionnaire were then merged by a farm identification number. A single trait mixed model was used to analyze AYC, milk fat percentage, and BTSCC, while a log linear model was used to analyze bacterial score. Results showed that farms that kept records on individual animals had higher (P < 0.05) milk fat percentages and lower bacterial scores than farms that did not. Farms that used genetic information (EBV) and phenotypes when selecting sires were higher (P < 0.05) for milk fat percentage than farms that used only phenotypes and personal opinion. Farms milking cows with a single unit milking machine and by hand, had higher (P < 0.05) bacterial scores and BTSCC than farms using only a single or multi unit machine. Overall farms that kept individual animal records, used EBV when selecting sires, used a single method for collecting milk, and used family labor achieved higher performance from their herds than farms that did not.