Characterization of soil microbial communities under different potato cropping systems by microbial population dynamics, substrate utilization, and fatty acid profiles

The effects of 11 different 2- and 3-yr potato crop rotations on soil microbial communities were characterized over three field seasons using several techniques. Assessments included microbial populations determined by soil dilution plate counts on various general and selective culture media, microbial activity by fluorescein diacetate (FDA) hydrolysis, single carbon source substrate utilization (SU) profiles, and fatty acid methyl ester (FAME) profiles. Potato rotation crops evaluated in research plots at Newport, ME, included barley/clover, canola, green bean, millet, soybean, sweet corn, and a continuous potato control. Soil populations of culturable bacteria and overall microbial activity tended to be highest following barley, canola, and sweet corn rotations, and lowest with continuous potato. Differences among rotations were less apparent during the potato phase of the rotations. Populations of actinomycetes and fluorescent pseudomonads tended to be greater in barley rotations than in most other rotations. SU profiles derived from BIOLOG GN2 plates indicated that certain rotations, including barley, canola, and sweet corn tended to have higher overall microbial activity, and barley and sweet corn rotations averaged higher substrate richness and diversity. Soybean and potato rotations tended to have lower substrate richness and diversity. Principal component analyses of SU data revealed differences among rotation soil communities in their utilization of individual carbon sources and substrate guilds, including carbohydrates, carboxylic acids, amines/amides, and amino acids. Analyses of soil FAME profiles demonstrated distinct differences among all the rotation soils in their relative composition of fatty acids, indicating differences in their microbial community structure. Fatty acids most responsible for differentiation among rotation soils included 16:1 ω5c, 16:1 ω7c, 18:2 ω6c, 18:1 ω9c, 12:0, and 13:0 anteiso, with 16:1 ω5c being the single greatest determinant. Overall, monounsaturated fatty acids, particularly 16:1 ω5c, were most prevalent in sweet corn rotations and polyunsaturates were highest in barley and millet rotations. Straight chain saturated fatty acids comprised the greatest proportion of fatty acids in soils under continuous potato. FAME biomarkers for microorganism groups indicated barley and millet rotations had the highest ratio of fungi to bacteria, and soybean and continuous potato had the lowest ratio. This research has demonstrated that different crop rotations have distinctive effects on soil microbial communities that are detectable using a variety of techniques. Further studies will identify more specific changes associated with particular rotations and relate these changes to potential effects on disease management, crop health, and crop productivity.     

Soil microbial dynamics in maize-growing soil under different tillage and residue management systems

The long-term impact of tillage and residue management on soil microorganisms was studied over the growing season in a sandy loam to loamy sand soil of southwestern Quebec, growing maize (Zea mays L.) monoculture. Tillage and residue treatments were first imposed on plots in fall 1991. Treatments consisted of no till, reduced tillage, and conventional tillage with crop residues either removed from (−R) or retained on (+R) experimental plots, laid out in a randomized complete block design. Soil microbial biomass carbon (SMB-C), soil microbial biomass nitrogen (SMB-N) and phospholipid fatty acid (PLFA) contents were measured four times, at two depths (0-10 and 10-20 cm), over the 2001 growing season. Sample times were: May 7 (preplanting), June 25, July 16, and September 29 (prior to corn harvest). The effect of time was of a greater magnitude than those attributed to tillage or residue treatments. While SMB-C showed little seasonal change (160 μg C g⁻¹ soil), SMB-N was responsive to post-emergence mineral nitrogen fertilization, and PLFA analysis showed an increase in fungi and total PLFA throughout the season. PLFA profiles showed better distinction between sampling time and depth, than between treatments. The effect of residue was more pronounced than that of tillage, with increased SMB-C and SMB-N (61 and 96%) in +R plots compared to −R plots. This study illustrated that measuring soil quality based on soil microbial components must take into account seasonal changes in soil physical and chemical conditions.     

Eubacterial communities in different soil macroaggregate environments and cropping systems

Different positions within soil macroaggregates, and macroaggregates of different sizes, have different chemical and physical properties which could affect microbial growth and interactions among taxa. The hypothesis that these soil aggregate fractions contain different eubacterial communities was tested using terminal restriction fragment length polymorphism (T-RFLP) of the 16S ribosomal gene. Communities were characterized from two field experiments, located at the Kellogg Biological Station (KBS), MI, USA and the Ohio Agricultural Research and Development Center (OARDC), Wooster, OH, USA. Three soil management regimes at each site were sampled and management was found to significantly affect T-RFLP profiles. The soil aggregate erosion (SAE) method was used to isolate aggregate regions (external and internal regions). Differences between eubacterial T-RFLP profiles of aggregate exteriors and interiors were marginally significant at KBS (accounting for 12.5% of total profile variance), and not significant at OARDC. There were no significant differences among macroaggregate size classes at either site. These results are in general agreement with previous studies using molecular methods to examine microbial communities among different soil macroaggregate size fractions, although further study of communities within different aggregate regions is warranted. Analysis of individual macroaggregates revealed large inter-aggregate variability in community structure. Hence the tertiary components of soil structure, e.g. arrangement of aggregates in relation to shoot residue, roots, macropores, etc., may be more important than aggregate size or intra-aggregate regions in the determination of the types of microbial communities present in aggregates. Direct microscopic counts were also used to examine the bacterial population size in aggregate regions at KBS. The proportion of bacterial cells with biovolumes >0.18 μm³ was higher in aggregate interiors than in exteriors, indicating potentially higher activity in that environment. This proportion was significantly related to percent C of the samples, while total bacterial cell counts were not.     

Soil microbial biomass and mineralization of carbon and nitrogen in ecological, integrated and conventional forage and arable cropping systems

 In a cropping systems experiment in southeastern Norway, ecological (ECO), integrated (INT) and conventional (CON) forage (FORAGE) and arable (ARABLE) model farms were compared. After 5 experimental years, topsoil was sampled in spring from spring grain plots and incubated for 449 days at controlled temperature (15  °C) and moisture content (50% water-holding capacity). There were no detectable differences between model farms in terms of total soil C or N. For INT and CON, however, values of microbial biomass C and N, microbial quotient (C_mic/C_org), and C and N mineralization were, or tended to be, higher for FORAGE than for ARABLE. For the ECO treatment, values were similar for FORAGE and ARABLE and did not differ significantly from that of CON-FORAGE. For INT and CON, the metabolic quotient (qCO₂) was lower for FORAGE than for ARABLE. Again, for the ECO treatment, values were similar for FORAGE and ARABLE and did not differ significantly from that of CON-FORAGE. We estimated the sizes of conceptual soil organic matter pools by fitting a decomposition model to biomass and mineralization data. This resulted in a 48% larger estimate for CON-FORAGE than for CON-ARABLE of physically protected biomass C. For physically protected organic C the difference was 42%. Moreover, the stability of soil aggregates against artificial rainfall was substantially greater for CON-FORAGE than for CON-ARABLE. On this basis, we hypothesized that the lower qCO₂ values in the FORAGE soils were mainly caused by a smaller proportion of active biomass due to enclosure of microorganisms within aggregates. Altogether, our results indicated a poorer inherent soil fertility in ARABLE than in FORAGE rotations, but the difference was small or absent in the ECO system, probably owing to the use of animal and green manures and reduced tillage intensity in the ECO-ARABLE rotation. Received: 28 October 1998     

Abundance, production and stabilization of microbial biomass under conventional and reduced tillage

Soil tillage practices affect the soil microbial community in various ways, with possible consequences for nitrogen (N) losses, plant growth and soil organic carbon (C) sequestration. As microbes affect soil organic matter (SOM) dynamics largely through their activity, their impact may not be deduced from biomass measurements alone. Moreover, residual microbial tissue is thought to facilitate SOM stabilization, and to provide a long term integrated measure of effects on the microorganisms. In this study, we therefore compared the effect of reduced (RT) and conventional tillage (CT) on the biomass, growth rate and residues of the major microbial decomposer groups fungi and bacteria. Soil samples were collected at two depths (0-5 cm and 5-20 cm) from plots in an Irish winter wheat field that were exposed to either conventional or shallow non-inversion tillage for 7 growing seasons. Total soil fungal and bacterial biomasses were estimated using epifluorescence microscopy. To separate between biomass of saprophytic fungi and arbuscular mycorrhizae, samples were analyzed for ergosterol and phospholipid fatty acid (PLFA) biomarkers. Growth rates of saprophytic fungi were determined by [¹⁴C]acetate-in-ergosterol incorporation, whereas bacterial growth rates were determined by the incorporation of ³H-leucine in bacterial proteins. Finally, soil contents of fungal and bacterial residues were estimated by quantifying microbial derived amino sugars. Reduced tillage increased the total biomass of both bacteria and fungi in the 0-5 cm soil layer to a similar extent. Both ergosterol and PLFA analyses indicated that RT increased biomass of saprophytic fungi in the 0-5 cm soil layer. In contrast, RT increased the biomass of arbuscular mycorrhizae as well as its contribution to the total fungal biomass across the whole plough layer. Growth rates of both saprotrophic fungi and bacteria on the other hand were not affected by soil tillage, possibly indicating a decreased turnover rate of soil microbial biomass under RT. Moreover, RT did not affect the proportion of microbial residues that were derived from fungi. In summary, our results suggest that RT can promote soil C storage without increasing the role of saprophytic fungi in SOM dynamics relative to that of bacteria.     

Effects of cropping systems on soil organic matter in a pair of conventional and biodynamic mixed cropping farms in Canterbury, New Zealand

Effects of cropping systems on soil organic matter (SOM) in a pair of conventional and biodynamic mixed cropping farms were investigated. Soil samples (0–75 and 75–150-mm depths) were analysed for total carbon (TC), total nitrogen (TN), microbial biomass C (BC) and microbial biomass N (BN), and sequentially extracted for labile and stable SOM using cold water, hot water, acid mixtures and alkalis. In the biodynamic farm, TC and TN decreased with increasing period of cropping but the reverse occurred under pastures. These were not shown in soils from the conventional farm, probably due to N fertilizer additions. Under pastures, increases in SOM were attributed to greater biological N₂ fixation and the return of plant residues and excreta from grazing animals. Overall, sensitive SOM quality indicators found for labile SOM were BN, BN:TN and HC:TC, and for stable SOM were HCl/HFC, HCl/HFC:TC, humin C, humin N, humin C:TC and humin N:TN. The BN and BN:TN were better indicators than BC and BC:TC. The humin fraction was strongly related to both labile and stable SOM fractions suggesting that humin contained non-extractable strongly complexed SOM components with mineral matter and also non-extractable plant and microbial residual components. Received: 10 October 1996     

Soil microbial tests for discriminating between different cropping systems and fertiliser regimes

The aim of this study was to evaluate a set of microbial soil tests for their ability to discriminate between different agricultural practices. For this purpose three sites included in the Swedish Long-Term Soil Fertility Experiments were chosen. The fertility experiments were designed to compare different cropping systems (simulating farming with and without livestock), PK-fertiliser and N-fertiliser regimes. Six different microbial tests were used to derive nine variables describing: (1) basal microbial activity (B-res), (2) potential microbial activities (substrate induced respiration, SIR; potential NH₄ ⁺ oxidation, PAO; potential denitrification activity, PDA; and alkaline phosphatase activity, Alk-P), (3) specific microbial growth rates (μ _res and μ _PDA) and (4) nutrient-limited respiration rates (maximal P-limited respiration, Max-P; and maximal N-limited respiration, Max-N?). Among the individual microbial variables B-res, SIR, μ _res and μ _PDA were the best discriminators of the two different cropping systems. All of them, except μ _PDA, showed some degree of interaction between different treatments. However, the best discriminators between cropping systems were the components [principal component (PC)?1 and 2] from a PC analysis (PCA). In all three soils PC?1 discriminated well between the two cropping systems. In addition, PC?1 and PC?2 reflected the P-fertilisation rate. Max-P alone had the best potential to reflect the microbially available P in the soil and thereby indirectly the plant-available P. The μ _res was also useful when assessing available P in the soil. The N-fertilisation rate seemed to be the most difficult treatment to assess with the microbial activity variables. In addition, PCA revealed a consistent functional relationship in all three soils between the potential activity variables (SIR, PAO, PDA, and Alk-P).     

Effect of temperature on soil microbial biomass and its metabolic quotient in situ under different tillage systems

Variations in the microbial biomass and the in situ metabolic quotient (qCO₂) due to climatic conditions were determined in a typical soil from the Argentine Rolling Pampa. Microbial C was evaluated by fumigation-incubation and qCO₂ was calculated using soil respiration in the field. An inverse relationship between microbial C and soil temperature was fitted to a model (r ²=0.90, P=0.01). No significant association with the soil water content was detected because the soil was generally near field capacity and thus water availability did not limited microbial growth and activity. Values of qCO₂ increased (r ²=0.89, P=0.01) as the result of metabolic activatìon, likely induced by a higher maintenance energy requirement at high temperatures. The highest values of qCO₂ were obtained when microbial C was the lowest, which was attributed to self consumption of microbial C in the presence of high temperatures. Consequently, microbial C was generally higher (P=0.05) in winter than in summer. Therefore, when microbial C is used as an index of soil biological activity, the influence of temperature should be taken into account.     

Soil microbial dynamics and genetic diversity in soil under monoculture wheat grown in different long-term management systems

Organic matter incorporation into soil can increase nutrient availability to plants but it can affect soil microbial communities. These in turn influence soil fertility and plant growth. Soil biochemical and microbiological properties are indicators of soil quality, but there is still no consensus as to how these should be used. Recent developments in molecular biology have provided new tools to obtain a view of the whole microbial community. The long-term impact of crop residue management on the microbial biomass, and on the activity and community structure of soil bacteria was evaluated in a clay soil of Southern Italy, where a monoculture of durum wheat (Triticum durum Desf.) was grown in semiarid conditions, and burning or incorporation of post harvest plant residues were typical practices. The role of N-mineral fertilization, simultaneously with the ploughing in of crop residues and during the plant growth cycle was also investigated. Total bacterial counts of viable cells, biomass C, ATP content of soil microorganisms, genetic fingerprinting of the total eubacterial community and of ammonia oxidizers were evaluated. Burning and incorporation did not affect microbial biomass C, ATP content, and total bacterial counts of viable cells although statistically relevant changes were detected among rhizosphere and bulk soil samples regardless of the crop residue management used. Molecular fingerprinting confirmed that: no significant change in the composition and diversity of total bacteria, as well as of ammonia oxidizers was induced by the crop residue managements; that soil bacteria were more sensitive to N fertilizer application during the plant growth cycle; and that rhizosphere soil samples were significantly different from those of the bulk soil. As microbiological and genetic factors related to soil fertility were not affected significantly, the long-term incorporation of crop residues, under the field conditions investigated, is a sustainable practice to manage post-harvest residues.     

Seasonal variations of soil microbial biomass and activity in warm- and cool-season turfgrass systems

Plant growth can be an important factor regulating seasonal variations of soil microbial biomass and activity. We investigated soil microbial biomass, microbial respiration, net N mineralization, and soil enzyme activity in turfgrass systems of three cool-season species (tall fescue, Festuca arundinacea Schreb., Kentucky bluegrass, Poa pratensis L., and creeping bentgrass, Agrostis palustris L.) and three warm-season species (centipedegrass, Eremochloa ophiuroides (Munro.) Hack, zoysiagrass, Zoysia japonica Steud, and bermudagrass, Cynodon dactylon (L.) Pers.). Microbial biomass and respiration were higher in warm- than the cool-season turfgrass systems, but net N mineralization was generally lower in warm-season turfgrass systems. Soil microbial biomass C and N varied seasonally, being lower in September and higher in May and December, independent of turfgrass physiological types. Seasonal variations in microbial respiration, net N mineralization, and cellulase activity were also similar between warm- and cool-season turfgrass systems. The lower microbial biomass and activity in September were associated with lower soil available N, possibly caused by turfgrass competition for this resource. Microbial biomass and activity (i.e., microbial respiration and net N mineralization determined in a laboratory incubation experiment) increased in soil samples collected during late fall and winter when turfgrasses grew slowly and their competition for soil N was weak. These results suggest that N availability rather than climate is the primary determinant of seasonal dynamics of soil microbial biomass and activity in turfgrass systems, located in the humid and warm region.     

Effect of long-term manuring and fertilizers on carbon pools,soil structure,and sustainability under different cropping systems in wet-temperate zone of northwest Himalayas

We investigated C management index (CMI; an indicator of sustainability of a management system and is based on total and labile C) and soil aggregation in medium-textured soils (silt loam and silty clay loam) under different cropping systems as follows: maize-wheat (M-W), rice-wheat (R-W), soybean-wheat (S-W), Guinea grass, and Setaria grass. Field experiments were 6–32 years long and were located in the wet-temperate zone of northwest Himalayas. The plant nutrients were applied through chemical fertilizers (urea, superphosphate, and muriate of potash) with or without organic materials (FYM, wheat straw, and Lantana spp.). The content of total C (C_T), labile C (C_L), CMI, mean weight diameter (MWD), and aggregate porosity varied significantly under different cropping systems. The range was 1.59 (R-W)–4.29% (Setaria) for C_T, 1.23 (R-W)–3.89 mg/kg (Guinea grass) for C_L, 52.09 (R-W)–129.77 (Guinea grass) for CMI, 0.90 (R-W)–5.09 (Guinea grass) for MWD, and 41.5 (R-W)–56.8% (S-W) for aggregate porosity. Aggregate porosity was highest (56.8%) under S-W, followed by grasses (50.1–51.2%), and M/R-W (41.5–50.0%). As per these data, (a) continuous use of N alone as urea lowered soil sustainability over control (no fertilizers); (b) use of NPK at recommended rates improved soil productivity over control; (c) the NPK + organic amendments further improved soil sustainability; and (d) the sustainability under different cropping systems followed the order: perennial grasses > soybean-wheat > maize-wheat > rice-wheat.     

Carbon management index based on physical fractionation of soil organic matter in an Acrisol under long-term no-till cropping systems

The carbon management index (CMI) is derived from the total soil organic C pool and C lability and is useful to evaluate the capacity of management systems to promote soil quality. However, the CMI has not been commonly used for this purpose, possible due to some limitations of the 333 mM KMnO₄-chemical oxidation method conventionally employed to determine the labile C fraction. We hypothesized, however, that physical fractionation of organic matter is an alternative approach to determine the labile C. The objectives of this study were (i) to assess the physical fractionation with density (NaI 1.8 Mg m⁻³) and particle-size separation (53 μm mesh) as alternative methods to the KMnO₄-chemical oxidation (60 and 333 mM) in determining the labile C and thus the CMI, and (ii) to evaluate the capacity of long-term (19 years) no-till cropping systems (oat/maize: O/M, oat + vetch/maize: O + V/M, oat + vetch/maize + cowpea: O + V/M + C, and pigeon pea + maize: P + M) and N fertilization (0 and 180 kg N ha⁻¹) to promote the soil quality of a Southern Brazilian Acrisol, using the CMI as the main assessment parameter. Soil samples were collected from 0 to 12.5 cm layer, and the soil of an adjacent native grassland was taken as reference. The mean annual C input of the cropping systems varied from 3.4 to 6.0 Mg ha⁻¹ and the highest amounts occurred in legume-based cropping systems and N fertilized treatments. The C pool index was positively related to the annual C input (r² = 0.93, P < 0.002). The labile C determined by density (4.4–10.4% of C pool) and particle-size separation (9.5–17.7% of C pool) had a close relationship (r = 0.60 and 0.85, respectively) with the labile C determined using 60 mM KMnO₄ (7.3–10.5% of C pool). The labile C resulting from the three methods was related to the annual C input imparted by the cropping systems (r² = 0.67–0.88), reinforcing the possibility of using physical fractionation as an alternative approach to determine labile C. In contrast, the chemical method using 333 mM KMnO₄ was not sensitive to different cropping systems and resulted in too high percentage of labile C, varying from 16.8 to 35.2% of the C pool. The CMI based on physical fractionation was a sensitive tool for assessing the capacity of management systems to promote soil quality, as evidenced by its close correlation (r = 0.88, at average) with soil physical, chemical, and biological attributes. The introduction of winter (vetch) and, especially, summer legume cover crops (cowpea and pigeon pea), or application of fertilizer-N, improved the capacity of the management system into promote soil quality in this subtropical Acrisol.     

不同利用方式下红壤微生物生物量及代谢功能多样性的变化

研究了不同农林利用方式下红壤微生物生物量和代谢功能多样性等土壤质量指标的变化.结果表明:不同利用方式对土壤质量各指标造成了显著的影响;稻田的微生物生物量碳、氮最高,林地和草地微生物生物量次之,旱地的微生物生物量碳、氮最低(分别是稻田利用方式的4.3% 和 13.7%);稻田的微生物代谢功能多样性最高,旱地、林地和草地的细菌代谢功能多样性较低,旱地的真菌代谢功能多样性最低;微生物生物量和代谢功能多样性可以作为反映土壤质量变化的早期敏感的指标,用来衡量管理措施的改变对土壤质量造成的影响.     

Temperature and substrate controls on microbial phospholipid fatty acid composition during incubation of grassland soils contrasting in organic matter quality

Soil incubations are often used to investigate soil organic matter (SOM) decomposition and its response to increased temperature, but changes in the activity and community composition of the decomposers have rarely been included. As part of an integrated investigation into the responses of SOM components in laboratory incubations at elevated temperatures, fungal and bacterial phospholipid fatty acids (PLFAs) were measured in two grassland soils contrasting in SOM quality (i.e. SOM composition), and changes in the microbial biomass and community composition were monitored. Whilst easily-degradable SOM and necromass released from soil preparation may have fuelled microbial activity at the start of the incubation, the overall activity and biomass of soil microorganisms were relatively constant during the subsequent one-year soil incubation, as indicated by the abundance of soil PLFAs, microbial respiration rate (r), and metabolic quotient (qCO₂). PLFAs relating to fungi and Gram-negative bacteria declined relative to Gram-positive bacteria in soils incubated at higher temperatures, presumably due to their vulnerability to disturbance and substrate constraints induced by faster exhaustion of available nutrient sources at higher temperatures. A linear correlation was found between incubation temperatures and the microbial stress ratios of cyclopropane PLFA-to-monoenoic precursor (cy17:0/16:1ω7c and cy19:0/18:1ω7c) and monoenoic-to-saturated PLFAs (mono/sat), as a combined effect of temperature and temperature-induced substrate constraints. The microbial PLFA decay patterns and ratios suggest that SOM quality intimately controls microbial responses to global warming.     

Size and activity of the soil microbial biomass under grass and arable management

 The effects of 5 years of continuous grass/clover (Cont grass/clover) or grass (Cont grass) pasture or 5 years of annual grass under conventional (Ann grass CT) or zero tillage (Ann grass ZT) were compared with that of 5 years of continuous barley (LT arable) on a site which had previously been under arable crops for 11 years. For added comparison, a long-term grass/clover pasture site (LT past) nearby was also sampled. Soil organic C (C_org) content followed the order LT arable=Ann grass CT<Ann grass ZT<Cont grass=Cont grass/clover<LTpast. Trends with treatment for microbial biomass C (C_mic), basal respiration, flourescein diacetate (FDA) hydrolytic activity, arginine ammonification rate and the activities of dehydrogenase, protease, histidase, acid phosphatase and arylsulphatase enzymes were broadly similar to those for C_org. For C_mic, FDA hydrolysis, arginine ammonification and the activities of histidase, acid phosphatase and arylsulphatase, the percentage increase caused by 5 years of continuous pasture (in comparison with LT arable) was 100–180%, which was considerably greater than that for organic C (i.e. 60%). The microbial metabolic quotient (qCO₂) was higher for the two treatments which were mouldboard ploughed annually (LT arable and Ann grass CT) than for the undisturbed sites. At the undisturbed sites, C_org declined markedly with depth (0–15 cm) and there was a similar stratification in the size and activity of C_mic and enzyme activity. The microbial quotient (C_mic/C_org) declined with depth whilst qCO₂ tended to increase, reflecting a decrease in the proportion of readily available substrate with depth. Received: 7 July 1998     

Environmental conditions rather than microbial inoculum composition determine the bacterial composition,microbial biomass and enzymatic activity of reconstructed soil microbial communities

The composition of microbial communities and the level of enzymatic activity in the soil are both important indicators of soil quality, but the mechanisms by which a soil bacterial community is generated and maintained are not yet fully understood. Two soil samples were collected from the same location, but each had been subjected to a different long-term fertilization treatment and was characterized by different microbial diversity, biomass and physicochemical properties. These samples were γ-sterilized and swap inoculated. Non-sterilized soil samples along with sterilized and inoculated soil samples were incubated for eight months before their nutrient content, microbial biomass, enzymatic activity and bacterial composition were analyzed. Total phosphorus, and potassium concentrations along with the overall organic matter content of the non-sterilized soil were all equal to those of the same soil that had been sterilized and self/swap inoculated. Additionally, the microbial biomass carbon concentration was not affected by the specific inoculum and varied only by soil type. The activities of catalase, invertase, urease, protease, acid phosphatase and phytase were smaller in the sterilized soils that had been inoculated with organisms from chemical fertilizer amended soil (NPK) when compared to sterilized soil inoculated with organisms from manure and chemical fertilizer amended soil (NPKM) and non-sterilized soil samples. Bacterial 16S rRNA examined by 454-pyrosequencing revealed that the composition of bacterial community reconstructed by immigrant microbial inoculum in the soil was mainly influenced by its physicochemical properties, although the microbial inoculum contained different abundances of bacterial taxa. For example, the pH of the soil was the dominant factor in reconstructing a new bacterial community. Taken together, these results demonstrated that both soil microbial composition and functionality were primarily determined by soil properties rather than the microbial inoculum, which contributed to our understanding of how soil microbial communities are generated and maintained.     

Carbon availability and microbial biomass in soil under an irrigated wheat-maize cropping system receiving different fertilizer treatments

Seasonal changes in carbon availability and microbial biomass were studied in soil under an irrigated wheat-maize cropping system receiving different fertilizter treatments over the past 10 years. Treatments included N-100 and N-200 (urea at 100 and 200kgNha^–1 year^–1, respectively), FYM-16 and FYM-32 (farmyard manure at 16 and 32tha^–1 year^–1, respectively) and a control (unfertilized). Aerobically mineralizable carbon (AMC; C mineralized after 10 days aerobic incubation at 30°C) increased (13–16%) under wheat at both rates of urea whereas under maize it increased (22%) only with the lower rate of urea. Farmyard manure also increased the content of soil AMC under both crops, the effect being two- to threefold higher under wheat than under maize. Urea application caused an 32–78% increase in the specific respiratory activity (SRA) under wheat but caused an 11–50% decrease during the maize season. Farmyard manure also resulted in a higher SRA under both crops but only at the higher application rate. Under wheat, microbial biomass C (MBC) decreased in urea-treated plots but showed a slight increase at the higher rate of FYM. During the maize season, MBC was higher under both urea (42–46%) and FYM (36–47%) treatments as compared to the control. Microbial biomass turnover rate was highest for FYM-32 (2.08), followed by FYM-16 and urea treatments (1.35–1.49); control plots showed a turnover rate of 0.82. The higher AMC and SRA during the active growth period of wheat than that of maize indicated that root-derived C from wheat was higher in amount and more easily degradable. Received: 16 April 1996     

Characterization of active nitrogen pools in soils under different cropping systems

 Studies were conducted to evaluate the relationships among different active N pools of organic matter in soils at two long-term cropping systems in Iowa. Results indicated that multi-cropping systems, particularly meadow-based systems, enhanced bioactivities of soils. Mono-cropping systems, particularly soybean, reduced soil microbial biomass and enzyme activities. The mineralizable N pool (potential N mineralization;N _o) was more sensitive to changes in the size of the microbial biomass N (N_mic) than to changes in organic N. One unit change in organic N did not lead to substantial changes in N _o, but 1 unit change in N_mic resulted in three or more units change in N _o. The active N pools and turnover rate were more sensitive to changes in organic C than to changes in microbial biomass C (C_mic). A unit change in organic C resulted in 10.6 units change in N _o, but a unit change in C_mic resulted in only 0.8 unit change in N _o. C_mic or N_mic are better indexes than organic C or N for the estimation of N _o or N availability, because biomass values are more highly correlated with cumulative N mineralized during 24 weeks of incubation, with r values ranging from 0.57 (P<0.001) to 0.88 (P<0.001). Received: 18 October 1999     

Response of soil microbial communities to the herbicide mesotrione: A dose-effect microcosm approach

Mesotrione is a new selective herbicide used for maize crops. The responses of microbial communities of a chernozem soil (Limagne basin, France) to pure or formulated (Callisto^®) mesotrione, applied at three different doses [one fold field rate (1 × FR), 10 × FR and 100 × FR], were studied using a laboratory microcosm approach. The effects were assessed on the prokaryotic cell abundance, the overall microbial activities (substrate-induced respiration (SIR) and dehydrogenase activity (DHA)) and the genetic structure of the bacterial and fungal communities (temporal temperature/denaturing gradient gel electrophoresis (TT/DGGE)). Mesotrione dissipation was similar whatever the formulation applied and the amounts dissipated were positively correlated to application rates. Several biodegradation products including the metabolites 4-methylsulfonyl-2-nitrobenzoic acid (MNBA) and 2-amino-4-methylsulfonylbenzoic acid (AMBA) were detected from day 42 post-treatment, in 10 × FR and 100 × FR treated soils. No response of the soil microbial communities was detected in soil spread with both the 1 × FR applications. Overall soil microbial activity was stimulated from day 6 by 10 × FR of Callisto^® and more strongly by 100 × FR of pure mesotrione and Callisto^®, whereas prokaryote abundance did not increase before day 95 in both the 100 × FR treatments. Genetic structural shifts recorded from day 42 in the bacterial and fungal communities were small and mainly attributable to variations in band intensity. Maximum dissimilarity of the bacterial and fungal genetic structures between control and 100 × FR treated soils did not exceed 12% and 28%, respectively. The general pattern was that more consistent effects occurred with increasing exposure times, especially in both the 100 × FR treated soils. These microbial responses could be due to the stimulation of (i) adapted mesotrione-degrading microorganisms and (ii) the activity of resistant heterotrophic microbial groups promoted by dead biomass from sensitive organisms. In addition, at 100 × FR doses, pure mesotrione seemed to induce stronger microbial responses than Callisto^®, formulation which contains adjuvants with potential side-effects on some microbial populations. This experimental approach indicated that pure mesotrione and Callisto^® affected soil microbial communities, but the effects were only detected at doses far exceeding the recommended field rates.     

水力侵蚀影响下土壤有机碳和微生物数量动态变化特征

土壤侵蚀是土壤有机碳(Soil organic carbon,SOC)动态过程的重要驱动因素,明确土壤侵蚀如何影响土壤微生物进而作用于SOC,有助于准确把握土壤侵蚀在全球碳循环中的作用。通过野外径流小区模拟降雨试验,结合定量聚合酶链式反应(quantitative Polymerase Chain Reaction,q PCR)技术,研究了水力侵蚀后短期内(10 d)坡耕地表层土壤微生物数量和SOC含量动态变化特征,并在此基础上探讨了微生物与SOC间的关系。结果表明:与雨前相比,降雨侵蚀后表层土壤SOC含量没有显著差异,而表层土壤细菌数量显著降低,为雨前细菌数量的58.76%(坡上)、55.22%(坡中)、55.82%(坡下);降雨侵蚀同样显著改变了表层土壤真菌数量,雨后真菌数量为雨前真菌数量的105.51%(坡上)、2.29%(坡中),12.20%(坡下);降雨侵蚀后,SOC、细菌和真菌数量均在短时间内显著增加,达到峰值后下降;相关性分析表明,细菌和真菌数量与SOC之间的关系均未表现出显著正相关关系,仅有坡下细菌,坡中、坡下以及整个坡面真菌与SOC含量表现出显著正相关关系。