Covariation between the average lengths of mature coho (Oncorhynchus kisutch) and Chinook salmon (O. tshawytscha) and the ocean environment

We used the average fork length of age‐3 returning coho (Oncorhynchus kisutch) and age‐3 ocean‐type and age‐4 stream‐type Chinook (Oncorhynchus tshawytscha) salmon along the northeast Pacific coast to assess the covariability between established oceanic environmental indices and growth. These indices included the Multivariate El Niño‐Southern Oscillation Index (MEI), Pacific Decadal Oscillation (PDO), Northern Oscillation Index, and Aleutian Low Pressure Index. Washington, Oregon, and California (WOC) salmon sizes were negatively correlated with the MEI values indicating that ultimate fish size was affected negatively by El Niño‐like events. Further, we show that the growth trajectory of WOC salmon was set following the first ocean winter. Returning ocean‐type British Columbia‐Puget Sound Chinook salmon average fork length was positively correlated with the MEI values during the summer and autumn of return year, which was possibly a result of a shallower mixed layer and improved food‐web productivity of subarctic Pacific waters. Size variation of coho salmon stocks south of Alaska was synchronous and negatively correlated with warm conditions (positive PDO) and weak North Pacific high pressure during ocean residence.     

Relating spatial and temporal scales of climate and ocean variability to survival of Pacific Northwest Chinook salmon (Oncorhynchus tshawytscha)

Pacific Northwest Chinook, Oncorhynchus tshawytscha, have exhibited a high degree of variability in smolt‐to‐adult survival over the past three decades. This variability is summarized for 22 Pacific Northwest stocks and analyzed using generalized linear modeling techniques. Results indicate that survival can be grouped into eight distinct regional clusters: (1) Alaska, Northern BC and North Georgia Strait; (2) Georgia Strait; (3) Lower Fraser River and West Coast Vancouver Island; (4) Puget Sound and Hood Canal; (5) Lower Columbia Tules; (6) Columbia Upriver Brights, Willamette and Cowlitz; (7) Oregon and Washington Coastal; and (8) Klamath River and Columbia River Summers. Further analysis for stocks within each of the eight regions indicates that local ocean conditions following the outmigration of smolts from freshwater to marine areas had a significant effect on survival for the majority of the stock groups analyzed. Our analyses of the data indicate that Pacific Northwest Chinook survival covaries on a spatial scale of 350–450 km. Lagged time series models are presented that link large‐scale tropical Pacific conditions, intermediate‐basin scale northeastern Pacific conditions, and local sea surface temperatures to survival of Pacific Northwest stocks.     

A synthesis of the coast‐wide decline in survival of West Coast Chinook Salmon (Oncorhynchus tshawytscha,Salmonidae)

We collated smolt‐to‐adult return rate (SAR) data for Chinook salmon from all available regions of the Pacific coast of North America to examine the large‐scale patterns of salmon survival. For consistency, our analyses primarily used coded wire tag‐based (CWT) SAR estimates. Survival collapsed over the past half century by roughly a factor of three to ca. 1% for many regions. Within the Columbia River, the SARs of Snake River populations, often singled out as exemplars of poor survival, are unexceptional and in fact higher than estimates reported from many other regions of the west coast lacking dams. Given the seemingly congruent decline in SARs to similar levels, the notion that contemporary survival is driven primarily by broader oceanic factors rather than local factors should be considered. Ambitious Columbia River rebuilding targets may be unachievable because other regions with nearly pristine freshwater conditions, such as SE Alaska and northern BC, also largely fail to reach these levels. Passive integrated transponder (PIT) tag‐based SAR estimates available for Columbia River Basin populations are generally consistent with CWT findings; however, PIT tag‐based SARs are not adjusted for harvest which compromises their intended use because harvest rates are large and variable. More attention is needed on how SARs should be quantified and how rebuilding targets are defined. We call for a systematic review by funding agencies to assess consistency and comparability of the SAR data generated and to further assess the implications of survival falling to similar levels in most regions of the west coast.     

Effects of non-native brook trout (Salvelinus fontinalis) on threatened juvenile Chinook salmon (Oncorhynchus tshawytscha) in an Idaho stream

Macneale KH, Sanderson BL, Courbois J-YP, Kiffney PM. Effects of non-native brook trout ( Salvelinus fontinalis ) on threatened juvenile Chinook salmon ( Oncorhynchus tshawytscha ) in an Idaho stream.
Ecology of Freshwater Fish 2010: 19: 139–152. © 2009 John Wiley & Sons A/S
Abstract –  Non-native fishes have been implicated in the decline of native species, yet the mechanisms responsible are rarely apparent. To examine how non-native brook trout may affect threatened juvenile Chinook salmon, we compared feeding behaviours and aggressive encounters between these sympatric fish in Summit Creek, Idaho. Snorkelers observed 278 focal fish and examined diets from 27 fish in late summer 2003. Differences in feeding behaviours and diets suggest that there was minimal current competition for prey, although individual Chinook feeding activity declined as their encounter rate with other fish increased. While difference in size between fish generally determined the outcome of encounters (larger fish 'winning'), it was surprising that in some interspecific encounters aggressive Chinook displaced slightly larger brook trout (≤20 mm longer). We suggest that in late summer, frequent intraspecific interactions may be more important than interspecific interactions in potentially limiting Chinook growth in Summit Creek and perhaps in other oligotrophic streams where they co-occur.     

Effects of transportation timing on osmoregulation and survival in yearling hatchery Chinook salmon (Oncorhynchus tshawytscha)

Seasonal timing of transportation and acclimation of juvenile Chinook salmon (Oncorhynchus tshawytscha) between hatcheries may affect osmoregulation and survival. We investigated the duration of time fish need to acclimate to hatchery conditions prior to being presented with a saltwater challenge. We monitored acute survival and osmoregulatory ability following a 24-h saltwater challenge of fish previously transported to a hatchery at various times throughout the year compared to fish reared at that hatchery. Fish that underwent a saltwater challenge 3 weeks after transport had significantly reduced osmoregulatory performance and increased mortality compared to fish allowed an acclimation period of 2 months.     

δ13C-δ15N values as indicators of trophic position and competitive overlap for Pacific salmon (Oncorhynchus spp.)

Analysis of δ¹³C and δ¹⁵N isotope values for five species of Pacific salmon indicate that they form a trophic hierarchy on the high seas. On the basis of an analysis of these stable isotope ratios, chinook salmon feed at the upper end of the food chain and pink salmon at the lower end, in the sequence pink → sockeye → coho → chinook, with chinook and pink salmon separated by ca. 0.8 of a trophic level. Chum salmon occupy a peculiar position, with low δ¹³C values and high δ¹⁵N values, possibly reflecting an unusual diet that includes large amounts of gelatinous zooplankton (salps, ctenophoi;s, and medusae). Chum appear to occupy a unique trophic position, at a trophic level nearly as high as that of chinook but at the end of a different branch of the food chain. If true, the potential for trophodynamic competition with other salmon species is small. Our results suggest that the greatest potential for trophodynamic competition occurs within the pink-sockeye-coho grouping. A similar analysis, restricted to five stocks of North American sockeye, shows that four widely separated stocks have similar heavy isotope compositions but that the separation between these stocks is still statistically significant. The Chilko stock is strikingly different, however, suggesting that it is located in the central Gulf of Alaska, a region of intense upwelling. Circumstantial evidence supporting the possibility that the Chilko and other sockeye stocks are geographically separated within the Gulf of Alaska is reviewed.     

Climate effects on size‐at‐age and growth rate of Chinook Salmon (Oncorhynchus tshawytscha) in the Fraser River,Canada

Decline in size‐at‐age of Chinook Salmon (Oncorhynchus tshawytscha) has been observed for many populations across the entire Northeast Pacific Ocean, and identifying external drivers of this decline is important for sustainable management of these ecologically, economically, and culturally valuable resources. We assessed size‐at‐age of 96,939 Chinook Salmon sampled in the Fraser River watershed (Canada) from 1969 to 2017. A broad decline in size‐at‐age was confirmed across all population aggregates of Fraser River Chinook Salmon, in particular since year 2000. By developing a novel probability‐based approach to calculate age‐ and year‐specific growth rates for Fraser River Chinook Salmon and relating growth rates to environmental conditions in specific years through a machine learning method (boosted regression trees), we were able to disentangle multi‐year effects on size‐at‐age and thus identify environmental factors that were most related to the observed size‐at‐age of Chinook Salmon. Among 10 selected environmental variables, ocean salinity at Entrance Island in spring, the Aleutian Low Pressure Index and the North Pacific Current Bifurcation Index were consistently identified as important contributors for four of the seven age and population aggregate combinations. These top environmental contributors could be incorporated into future stock assessment and forecast models to improve Chinook Salmon fisheries management under climate change.     

Spatial distribution of ocean habitat of yearling Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon off Washington and Oregon,USA

We determined the habitat usage and habitat connectivity of juvenile Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon in continental shelf waters off Washington and Oregon, based on samples collected every June for 9 yr (1998–2006). Habitat usage and connectivity were evaluated using SeaWiFS satellite‐derived chlorophyll a data and water depth. Logistic regression models were developed for both species, and habitats were first classified using a threshold value estimated from a receiver operating characteristic curve. A Bernoulli random process using catch probabilities from observed data, i.e. the frequency of occurrence of a fish divided by the number of times a station was surveyed, was applied to reclassify stations. Zero‐catch probabilities of yearling Chinook and yearling coho salmon decreased with increases in chlorophyll a concentration, and with decreases in water depth. From 1998 to 2006, ～ 47% of stations surveyed were classified as unfavorable habitat for yearling Chinook salmon and ～ 53% for yearling coho salmon. Potentially favorable habitat varied among years and ranged from 9 856 to 15 120 km² (Chinook) and from 14 800 to 16 736 km² (coho). For both species, the smallest habitat area occurred in 1998, an El Niño year. Favorable habitats for yearling Chinook salmon were more isolated in 1998 and 2005 than in other years. Both species had larger and more continuous favorable habitat areas along the Washington coast than along the Oregon coast. The favorable habitats were also larger and more continuous nearshore than offshore for both species. Further investigations on large‐scale transport, mesoscale physical features, and prey and predator availability in the study area are necessary to explain the spatial arrangement of juvenile salmon habitats in continental shelf waters.     

Diel distribution,behaviour and consumption of juvenile Chinook salmon (Oncorhynchus tshawytscha) in a Wilderness stream

Abstract – Understanding population regulation in juvenile salmonids requires distinguishing the effects of intrinsic (size, behaviour) and extrinsic (food, competition) factors. To examine the relative influence of these variables on juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Salmon River drainage (ID, USA), we examined diel differences in foraging microhabitats, behaviour and consumption in two areas with consistent differences in parr‐to‐smolt survival. In lower Big Creek (LBC, high‐survival area) and upper Big Creek (UBC, low‐survival area), we observed fish by snorkelling, recording length, behaviour (foraging rate and aggression) and physical (depth, velocity, cover, temperature) and biotic (density, size and species of neighbouring fish) microhabitat features. Stomach contents were extracted to estimate consumption. Depth and temperature were greater in LBC, where Chinook salmon were significantly larger and present at lower densities. Fish in LBC exhibited higher foraging activity during the day than night, but there were no size differences between day and night foragers. In UBC, a higher density area, foraging behaviour did not change between day and night, although the smallest size classes did not forage nocturnally. Regression models that integrated physical and biotic variables suggested that physical factors influenced foraging in both areas, but competition also affected foraging in UBC. Our results demonstrate that fish from low‐ and high‐survival populations in Big Creek are exposed to different physical and biological influences during their first growth season, which are reflected in different diel foraging behaviours.     

Forecasting climate-induced changes in the survival of Snake River spring/summer Chinook salmon (Oncorhynchus tshawytscha)

Effective conservation and management of natural resources requires accurate predictions of ecosystem responses to future climate change, but environmental science has largely failed to produce these reliable forecasts. The future response of Pacific salmon (Oncorhynchus spp.) to a changing environment and continued anthropogenic disturbance is of particular interest to the public because of their high economic, social, and cultural value. While numerous retrospective analyses show a strong correlation between past changes in the ocean environment and salmon production within the north Pacific, these correlations rarely make good predictions. Using a Bayesian time-series model to make successive 1-yr-ahead forecasts, we predicted changes in the ocean survival of Snake River spring/summer chinook salmon (O. tshawytscha) from indices of coastal ocean upwelling with a high degree of certainty (R² = 0.71). Furthermore, another form of the dynamic times-series model that used all of the available data indicated an even stronger coupling between smolt-to-adult survival and ocean upwelling in the spring and fall (R² = 0.96). This suggests that management policies directed at conserving this threatened stock of salmon need to explicitly address the important role of the ocean in driving future salmon survival.     

The effect of restricted springtime feeding on growth and maturation of freshwater-reared Chinook salmon, Oncorhynchus tshawytscha (Walbaum)

Springtime fasting was used as a means to reduce the incidence of early maturation in freshwater cultured male chinook salmon Oncorhynchus tshawytscha (Walbaum) of New Zealand origin. The experiment was started with yearling fish at the beginning of September (spring) and completed in the following April (autumn) at the time of expected maturation. Feeding was restricted for 2 months (September-October) and 3 months (September-November) by offering food only on alternate weeks. In April, the control group, full fed throughout, had a significantly higher incidence (60%) of mature males then the two groups that had been fasted for 2 or 3 months in the spring. There was little difference in maturation rate in the latter groups (21% and 24%). Growth was depressed during fasting, relative to controls, but the mean weight of the group fasted for 2 months was not significantly different to that of the controls by April.     

Influence of estuary conditions on the recovery rate of coded‐wire‐tagged Chinook salmon (Oncorhynchus tshawytscha) in an ocean fishery

Chinook salmon (Oncorhynchus tschawytscha) populations within the highly modified San Francisco Estuary, California, have seen precipitous declines in recent years. To better understand this decline, a decade of coded‐wire tag release and recovery data for juvenile salmon was combined with physicochemical data to construct models that represented alternative hypotheses of estuarine conditions that influence tag recovery rate in the ocean. An information theoretic approach was used to evaluate the weight of evidence for each hypothesis and model averaging was performed to determine the level of support for variables that represented individual hypotheses. A single best model was identified for salmon released into the Sacramento River side of the estuary, whereas two competitive models were selected for salmon released into the San Joaquin River side of the estuary. Model averaging found that recovery rates were greatest for San Joaquin River releases when estuary water temperatures were lower, and salmon were released at larger sizes. Recovery rate of Sacramento releases was greatest during years with better water quality. There was little evidence that large‐scale water exports or inflows influenced recovery rates in the ocean during this time period. These results suggest that conceptual models of salmon ecology in estuaries should be quantitatively evaluated prior to implementation of recovery actions to maximise the effectiveness of management and facilitate the recovery of depressed Chinook populations.     

A study on relationships between large‐scale climate indices and estimates of North Pacific albacore tuna productivity

A logistic production model was used to examine potential relationships between three climate indices, the North Pacific Gyre Oscillation (NPGO), the Pacific Decadal Oscillation (PDO), and the Multivariate El Niño‐Southern Oscillation Index (MEI), and productivity estimates of the North Pacific albacore tuna (Thunnus alalunga) population. Catch and standardized catch‐per‐unit‐effort data from three longline fisheries (Japan, US, and Taiwan) were used in the model. The climate indices were incorporated into the model by correlating time‐varying intrinsic population growth rate (r_y) of the production model with the annual mean value for each index. The estimated probability that the NPGO is positively correlated with stock productivity, as measured by r_y, was 0.99, and the calculated probability that MEI is negatively correlated with the productivity was 0.95. The time lag for these correlations is 4 yr, which is consistent with the timing of recruitment to the Japan longline fishery. The PDO did not seem to have any detectable relationship with stock productivity. However, it remains uncertain if there is a conclusive linkage between the albacore productivity and the NPGO or the MEI index, because model fit to the data is about the same as that of a base model which does not use any climate index and assumes a time‐invariant r.     

Potential trophodynamic and environmental drivers of steelhead (Oncorhynchus mykiss) productivity in the North Pacific Ocean

Information on prey availability, diets, and trophic levels of fish predators and their prey provides a link between physical and biological changes in the ecosystem and subsequent productivity (growth and survival) of fish populations. In this study two long‐term data sets on summer diets of steelhead (Oncorhynchus mykiss) in international waters of the central North Pacific Ocean (CNP; 1991–2009) and Gulf of Alaska (GOA; 1993–2002) were evaluated to identify potential drivers of steelhead productivity in the North Pacific. Stable isotopes of steelhead muscle tissue were assessed to corroborate the results of stomach content analysis. We found the composition of steelhead diets varied by ocean age group, region, and year. In both the GOA and CNP, gonatid squid (Berryteuthis anonychus) were the most influential component of steelhead diets, leading to higher prey energy densities and stomach fullness. Stomach contents during an exceptionally warm year in the GOA and CNP (1997) were characterized by high diversity of prey with low energy density, few squid, and a large amount of potentially toxic debris (e.g., plastic). Indicators of good diets (high proportions of squid and high prey energy density) were negatively correlated with abundance of wild populations of eastern Kamchatka pink salmon (O. gorbuscha) in the CNP. In conclusion, interannual variations in climate, abundance of squid, and density‐dependent interactions with highly‐abundant stocks of pink salmon were identified as potential key drivers of steelhead productivity in these ecosystems. Additional research in genetic stock identification is needed to link these potential drivers of productivity to individual populations.     

Relationships between oceanic conditions and growth of Chinook salmon (Oncorhynchus tshawytscha) from California, Washington, and Alaska, USA

We model age‐specific growth rates of Chinook salmon (Oncorhynchus tshawytscha) with two life‐history behaviors from Alaska (i. Situk and ii.Taku Rivers), Puget Sound, Washington (iii., iv. Skagit River), and California (v. Smith River) relative to oceanic conditions in those regions. By analyzing over 20 yr of biological and physical data from the NE Pacific downwelling, upwelling, and transition zones, we are able to determine the factors affecting growth across much of the species’ range and between life‐history behaviors. With scale increment data from returning fish, we use path analysis and partial least squares regression to quantify the relationships between growth and regional‐ and large‐scale oceanic conditions (e.g., sea level height, sea surface temperature, upwelling). Alaskan fish with both ocean‐ and stream‐type behaviors were fit best by the environmental data from the winter in Alaska waters. Specifically, coastal and gyre factors such as sea surface temperature, river flow, and Ekman pumping positively correlated to growth, indicating a productive and strong Alaska Current promoted growth. Growth of fish from California was fit by local factors such as increased upwelling, lower coastal sea surface temperature, and wind stresses during summer and spring, indicating a productive and strong California Current promoted growth. For Puget Sound, Washington, growth of fish that migrate to sea in their first year was generally negatively correlated to a strong California Current. Puget Sound fish that spend a year in freshwater before migrating to sea were modeled well with environmental data from their source region for the first 2 yr at sea and by data from Alaska waters in their third year at sea. Results suggest that conditions in which the transition zone is dominated by neither the Alaska nor California Currents are best for increased growth of Puget Sound fish.     

Effects of temperature on Renibacterium salmoninarum infection and transmission potential in Chinook salmon,Oncorhynchus tshawytscha (Walbaum)

Renibacterium salmoninarum is a significant pathogen of salmonids and the causative agent of bacterial kidney disease (BKD). Water temperature affects the replication rate of pathogens and the function of the fish immune system to influence the progression of disease. In addition, rapid shifts in temperature may serve as stressors that reduce host resistance. This study evaluated the effect of shifts in water temperature on established R. salmoninarum infections. We challenged Chinook salmon with R. salmoninarum at 12 °C for 2 weeks and then divided the fish into three temperature groups (8, 12 and 15 °C). Fish in the 8 °C group had significantly higher R. salmoninarum‐specific mortality, kidney R. salmoninarum loads and bacterial shedding rates relative to the fish held at 12 or 15 °C. There was a trend towards suppressed bacterial load and shedding in the 15 °C group, but the results were not significant. Bacterial load was a significant predictor of shedding for the 8 and 12 °C groups but not for the 15 °C group. Overall, our results showed little effect of temperature stress on the progress of infection, but do support the conclusion that cooler water temperatures contribute to infection progression and increased transmission potential in Chinook salmon infected with R. salmoninarum.     

Prey selectivity and diel feeding chronology of juvenile chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon in the Columbia River plume

We studied salmon feeding selectivity and diel feeding chronology in the Columbia River plume. Juvenile chinook and coho salmon were caught by trawling at 2–3 h intervals throughout a diel period on three consecutive days (21–23 June 2000) at stations located 14.8 and 37 km offshore from the mouth of the Columbia River. A total of 170 chinook salmon were caught at the inshore and 79 chinook and 98 coho salmon were caught at the offshore station. After each trawl, potential prey were sampled at different depths with 2–3 different types of nets (1‐m diameter ring net, bongo net, neuston net). Despite the variability in zooplankton abundance, feeding selectivity was surprisingly constant. Both salmon species fed selectively on larger and pigmented prey such as hyperiid amphipods, larval and juvenile fish, various crab megalopae, and euphausiids. Hyperiid amphipods were abundant in the salmon diets and we hypothesize that aggregations of gelatinous zooplankton may facilitate the capture of commensal hyperiid amphipods. Small copepods and calyptopis and furcilia stages of euphausiids dominated the prey field by numbers, but were virtually absent from salmon diet. Juvenile chinook salmon, with increasing body size, consumed a larger proportion of fish. Stomach fullness peaked during morning hours and reached a minimum at night, suggesting a predominantly diurnal feeding pattern. In general, both chinook and coho salmon appear to be selective, diurnal predators, preying mostly on large and heavily pigmented prey items, in a manner consistent with visually oriented, size‐selective predation.     

Annual variations in the diet of juvenile chinook salmon (Oncorhynchus tshawytscha) in the Waitaki River and the demonstration channels, 1982–1986

The numbers of particular prey in stomach samples of juvenile chinook salmon varied between sites, months and years in two controlled flow demonstration channel sites and the mainstem lower Waitaki River. During 4 growing seasons, 1982–1986, Deleatidium, Aoteapsyche, Hydroptilidae, Elmidae, Chironomidae and Amphipoda were important components of the diet. Salmon also ate a variety of other items of aquatic and terrestrial origin. Diets were quite similar and tended to change in the same way in all sites simultaneously, perhaps in response to discharge. Smaller prey (Chironomidae, Hydroptilidae and early instar Aoteapsyche) were more numerous in stomach samples in seasons of lower, more stable, discharge. Fewer but larger prey were consumed during high flows. The salmon sampled in March 1986 originated from the high egg deposition of 1985 and grew during a season of low discharge. They were exceptionally small and their diet consisted of large numbers of small prey. There was no evidence of progressive annual changes in the habitat or the diet of salmon in the demonstration channels. However, it would be prudent to arrange for flow fluctuations that would be sufficient to flush finer substrate sediments in a controlled flow residual river, thus maintaining the diversity of prey for juvenile salmon.     

In vivo growth and genomic characterization of rickettsia‐like organisms isolated from farmed Chinook salmon (Oncorhynchus tshawytscha) in New Zealand

A rickettsia‐like organism, designated NZ‐RLO2, was isolated from Chinook salmon (Oncorhynchus tshawytscha) farmed in the South Island, New Zealand. In vivo growth showed NZ‐RLO2 was able to grow in CHSE‐214, EPC, BHK‐21, C6/36 and Sf21 cell lines, while Piscirickettsia salmonis LF‐89^T grew in all but BHK‐21 and Sf21. NZ‐RLO2 grew optimally in EPC at 15°C, CHSE‐214 and EPC at 18°C. The growth of LF‐89 ^T was optimal at 15°C, 18°C and 22°C in CHSE‐24, but appeared less efficient in EPC cells at all temperatures. Pan‐genome comparison of predicted proteomes shows that available Chilean strains of P. salmonis grouped into two clusters (p‐value = 94%). NZ‐RLO2 was genetically different from previously described NZ‐RLO1, and both strains grouped separately from the Chilean strains in one of the two clusters (p‐value = 88%), but were closely related to each other. TaqMan and Sybr Green real‐time PCR targeting RNA polymerase (rpoB) and DNA primase (dnaG), respectively, were developed to detect NZ‐RLO2. This study indicates that the New Zealand strains showed a closer genetic relationship to one of the Chilean P. salmonis clusters; however, more Piscirickettsia genomes from wider geographical regions and diverse hosts are needed to better understand the classification within this genus.     

The determination of maternal run time in juvenile Chinook salmon (Oncorhynchus tshawytscha) based on Sr/Ca and 87Sr/86Sr within otolith cores

Historically, Pacific salmon (Oncorhynchus spp.) returned to natal streams throughout much of the year and extant populations continue to display extensive variation in run time. The genetic and environmental mechanisms that regulate run time are not well-understood, and there are few objective criteria to determine an individual’s run time. Here, in order to develop an independent marker of run time, the relationship between maternal run time and otolith core strontium (Sr/Ca and ⁸⁷Sr/⁸⁶Sr) of progeny was examined. Chinook salmon (Oncorhynchus tshawytscha) juveniles from three rivers with fall- and spring-run hatchery populations were used to: (1) test the hypotheses that otolith Sr/Ca_core and ⁸⁷Sr/⁸⁶Sr_core are greater in progeny of females from fall-runs, which return to natal rivers and spawn during fall, compared with spring-runs, which return to natal rivers in spring and spawn during fall; and (2) determine if otolith Sr/Ca_core and ⁸⁷Sr/⁸⁶Sr_core can accurately predict maternal run time. Progeny of fall-run Chinook salmon consistently displayed greater Sr/Ca_core and ⁸⁷Sr/⁸⁶Sr_core than those of spring-run Chinook salmon, with the exception of Sr/Ca_core in one of the three rivers. Differences in core chemistry resulted in accurate determination of maternal run time for 87–100% of the juveniles examined. The use of Sr/Ca_core, however, resulted in more accurate identification of spring-run progeny while the use of ⁸⁷Sr/⁸⁶Sr_core resulted in more accurate identification of fall-run progeny. This methodology should be applicable to other anadromous species with variable run times although additional validation using wild runs is warranted. The ability to accurately determine individual run time will allow for independent examination of correlated life history traits that are related to individual and population growth rates.