Evaluation of Juvenile salmon passage and survival through a fish weir and other routes at Foster Dam,Oregon, USA

Downstream passage for juvenile Chinook salmon Oncorhynchus tshawytscha (Walbaum) and steelhead Oncorhynchus mykiss (Walbaum) through the fish weir at Foster Dam, Oregon, was evaluated to assess the weir's efficacy as a long-term passage solution. Radio telemetry was used to estimate survival, passage and effectiveness for the fish weir, spillway and turbines. Survival of Chinook salmon through the fish weir varied by season and reservoir elevation (66%–87%), and passage proportions were low (8%–20%). Fish weir effectiveness was low to moderate (0.39–2.09). Steelhead survival was lower (57%–77%) but passed the fish weir in higher proportions (77%), and weir effectiveness was consistently high (2.96–5.49). The results indicate the existing fish weir will not be a suitable long-term passage solution for all species. However, because of the high passage proportions and effectiveness observed for steelhead, further development of the surface-flow concept appears to be promising for safely passing downstream-migrating fishes.     

A patch perspective on summer habitat use by brown trout Salmo trutta in a high plains stream in Wyoming, USA

Abstract –  We quantified the use of habitat patches by brown trout, Salmo trutta , during summer conditions in a plains stream in the western United States. A Global Positioning System was used to map discrete habitat patches (2–420 m²) consisting of macrophytes, wood accumulation, or deep water. Habitat use by brown trout was monitored by radio telemetry. Brown trout used habitat in a nonrandom manner with 99% of all daytime observations and 91% of all nighttime observations occurring in patches that consisted of combinations of deep water, wood accumulations or macrophytes even though such patches constituted only 9.8% of the available habitat. Brown trout used deep water almost exclusively during the day but broadened their habitat use at night. Most fish stayed within a large plunge pool created by a low-head dam. This pool supplemented the deep-water habitat that was naturally rare in our study area and illustrates how human modifications can sometimes create habitat patches important for stream fishes.     

Interactions of baseflow habitat constraints: Macroinvertebrate drift,stream temperature,and physical habitat for anadromous salmon in the Calapooia River,Oregon

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Seasonal habitat use by brook trout,Salvelinus fontinalis (Mitchill), in a second-order stream

Abstract Seasonal habitat use by over-yearling and under-yearling brook trout, Salvelinus fontinalis (Mitchill), was examined in a second-order stream in north-central Pennsylvania, USA. The habitat occupied by brook trout and available habitat were determined in a 0.5-km stream reach during the spring, summer and autumn of 1989 and the spring and summer of 1990. Cover, depth, substrate and velocity were quantified from over 2000 observations of individual brook trout. Habitat used by under-yearling brook trout was more uniform between seasons and years than that used by over-yearling brook trout. Over-yearling brook trout occupied areas with more cover and greater depth than did under-yearling brook trout, suggesting ontogenetic shifts in these variables. Differences for velocity and substrate were not as great as those for cover and depth. The selection of areas with low water velocities governed trout habitat use in spring, whereas cover and depth were the most important habitat variables in summer and autumn. Principal component analysis showed that available habitat and trout habitat centroids diverged most in spring, indicating that habitat selection by brook trout may be greatest at this time.     

Detection efficiency and habitat use to inform inventory and monitoring efforts: juvenile coho salmon in the Knik River basin,Alaska

Imperfect detection associated with sampling gear presents challenges for wildlife inventory and monitoring efforts. We examined occupancy dynamics and habitat use of juvenile coho salmon, Oncorhynchus kisutch, in shallow lake environments over a summer and early fall season in the Knik River area of south central Alaska using models which control for and estimate sampling gear detection efficiency. In addition, we present statements for the probability that observed absences at a survey site or from a survey area (a collection of sites) are true absences given some amount of sampling effort and analysts' beliefs about site occupancy and sampling gear detection efficiency which can be used to guide inventory and monitoring efforts for juvenile salmon or other wildlife and plant species. Occupancy modelling results demonstrate that minnow traps were effective at sampling juvenile coho in shallow lake environments, with a mean probability of detection across the study period of 0.68 (i.e., probability of detecting the presence of juvenile coho given that they are present at a trap site; SE = 0.03). Juvenile coho salmon migrated into shallow water lakes in late summer and early fall, presumably to seek out overwinter habitat. N‐mixture modelling examination of habitat use demonstrated that once in shallow lake environments, juvenile coho were widely distributed across a range of microhabitats, with some evidence for preference for shallower depths and warmer water temperatures.     

A comparative study of juvenile salmon density in 20 streams throughout a very large river system in northern Norway

Abstract – The objective was to compare juvenile salmon density in 20 streams throughout the very large River Tana, northern Norway, and to relate variation in density to a suite of environmental factors. Four sampling sites were electrofished in each stream (one at the mouth of the stream and three within the stream) in August and October 2000, 2001, 2002. 0+ salmon parr were absent from seven streams, present at the mouth of 11 streams, and present within only two streams, both of which were probably spawning streams. Older parr migrated upstream into most streams and their highest densities were usually found in streams flowing directly into the spawning habitat in the three largest tributaries of the Tana or the river itself. Juvenile salmon were sparse or absent in streams flowing into smaller tributaries. Most streams with high parr densities were those of dense riparian vegetation that provided terrestrial invertebrates as drift food for the salmon parr, cover for fish, cooler stream temperatures in summer, and food for benthic stream invertebrates that were also a source of food for the parr.     

Seasonal movements with shifts in lateral and longitudinal habitat use by common bream,Abramis brama,in a heavily modified lowland river

Acoustic telemetry was used to investigate the longitudinal and lateral movements and distribution of adult common bream, Abramis brama (L.), over 43 months in a heavily modified lowland river in eastern England. A positive relationship between activity and temperature was found, with bream moving greater cumulative distances during the warmer months and distributed over a greater longitudinal proportion of the main channel. The occupancy of tributaries was related to temperature, with bream entering shallow tributaries during rising temperatures in the spring, whilst a deeper, slow‐flowing tributary was used more frequently during the cooler autumn/winter months. During the autumn, occupancy of this deeper tributary was positively related to flow rate in the main channel, suggesting that bream use this tributary for flow refuge. The functions of these behaviours are discussed along with potential management of heavily modified lowland rivers.     

Road culvert restoration expands the habitat connectivity and production area of juvenile Atlantic salmon in a large subarctic river system

The effects of restoration of impassable road culverts on the distribution of juvenile Atlantic salmon, Salmo salar L., were evaluated in seven small tributaries of the subarctic River Teno system, northernmost Finland/Norway. Restoration enabled the passage of juvenile salmon through the culverts and increased the distribution area of salmon parr in the seven streams by tens or hundreds of metres, depending on the natural slope of the tributary with a total of ≈1 km new area for ascending juveniles. Areas upstream of the culverts were colonised after varying number of years, mostly 2–3, following restoration. Age‐1 and age‐2 parr were the first salmon age groups entering the new territory after removal of the migration barrier. Although the restoration measures were conducted at the downstream outlet area of the culverts only, the connectivity was improved and increased the production area accessible to juvenile salmon. Such removal of migration barriers and securing habitat connectivity by passable culverts should be taken into account in environmental management strategies of river systems safeguarding the essential habitats of salmonid fish.     

Size-related habitat use by bitterling (Rhodeus sericeus) in a regulated lowland river

Abstract  – Habitat use by four size-classes of bitterling ( Rhodeus sericeus ) in a regulated lowland river was studied at two spatial scales. Mesohabitat scale was represented by the bank type (boulder, beach and steep eroded bank). Microhabitat associations with substrate types, vegetation, woody debris and position in the stream were examined at each mesohabitat scale. Three size cohorts of young-of-the-year (0+) fish and a group of adult bitterling were detected. Univariate ( χ ²-tests) and multivariate (Outlying Mean Index analysis) methods were applied to determine size-related habitat associations. All the size-classes of bitterling avoided the steep eroded bank and most 0+ bitterling were distributed along the boulder bank. The smallest fish had the most pronounced habitat requirements and occurred mostly in the depositional areas, whereas the larger 0+ fish occurred in deeper water. The size-related change in the habitat use coincided with a change in diet and morphological state.     

Inclusion of camelina meal as a protein source in diets for farmed salmonids

Camelina meal (Camelina sativa) (CM) is a potential protein source for aquaculture feeds, on account of its crude protein level (380 g kg^?1) and inclusion of most indispensable amino acids. Two experiments were conducted with rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar). Rainbow trout (44.9 g fish^?1) were fed diets with CM at 0 g kg^?1 (0% CM), 70 g kg^?1 (7% CM), 140 g kg^?1 (14% CM) or 210 g kg^?1 (21% CM) for 12 weeks at 14 °C in freshwater, and salmon (241.8 g fish^?1) were fed diets with CM at 0 g kg^?1 (0% CM), 80 g kg^?1 (8% CM), 160 g kg^?1 (16% CM) or 240 g kg^?1 (24% CM) for 16 weeks at 14 °C in sea water. Growth, lipid and amino acid tissue compositions were compared between species. Trout could tolerate up to 14% CM diets without affecting the growth compared to the control, while salmon fed ≥8% CM gained less weight than the control (P = 0.008). The feed conversion ratio in trout fed 21% CM was higher than the control (P = 0.002), and feed intake in salmon fed ≥8% CM was lower than the control (P = 0.006). Trout fatty acid and amino acid composition showed minimal differences between CM‐fed and control‐fed fish, while salmon showed significant alterations after feeding CM diets. Multivariate analyses emphasized differences in tissue composition between species fed CM diets.     

Biology and habitat use of three-spined stickleback (Gasterosteus aculeatus) in intermittent Mediterranean streams

Abstract –  We present the first data on three-spined stickleback ( Gasterosteus aculeatus ) life history and habitat use in seasonal Mediterranean streams, analysing populations from NE Iberian Peninsula. Stickleback populations were strictly annual, with reproduction events involving exclusively 1+ fish. Somatic growth was concentrated in two periods, one in spring and early summer, and another in autumn and winter. During summer there was a clear stop in the somatic growth, coupled with low values of somatic condition. This growth pattern contrasts both with that of other Mediterranean stream fish species and that of stickleback in other European locations. Stickleback populations occupied mainly intermediate locations along fluvial gradients. The presence of abundant aquatic vegetation was identified as one of the main factors related with both stickleback presence and the abundance of its populations, while the latter was also negatively related with that of invasive fish and crayfish species. Stickleback tended to occur in native-dominated fish communities, being almost absent from lower stream reaches, which bear high abundances of invasive fish species.     

Pathology and immunohistochemistry in three species of salmonids after experimental infection with Flavobacterium psychrophilum

Rainbow trout, Oncorhynchus mykiss (Walbaum), sea trout, Salmo trutta L., and Atlantic salmon, Salmo salar L., were experimentally infected with Flavobacterium psychrophilum in order to evaluate any species differences in susceptibility to the bacterium. Furthermore, differences in pathological changes and distribution of the bacteria in internal organs were studied. The bacteria were injected intraperitoneally in two doses, high dose (Hd) 1 x 10(7) colony forming units (CFU) fish(-1) and low dose (Ld) 1 x 10(6) CFU fish(-1). The mortalities in the Ld groups varied between 0 and 7.5% and in the Hd groups between 55-70%. No significant differences in mortality between the species were recorded. Clinical signs and pathological findings were similar in the three species and in accordance with those of rainbow trout fry syndrome. Rainbow trout showed more pronounced lesions in the spleen compared with the other species. Necrosis of renal tubular epithelium and haematopoietic tissue was most prominent in rainbow trout and Atlantic salmon. Intracellular eosinophilic droplets in the kidney tubular epithelium were a prominent finding in rainbow trout and sea trout surviving the infection. The distribution of the bacteria in internal organs was similar in the three species, as studied with immunohistochemistry.     

鱼类关键生境研究进展

鱼类关键生境(EFH)是指鱼类产卵、繁殖、摄食或育成所必须依赖的水域或底质环境。该文对EFH的产生和由来、研究和应用、评估内容和识别方法等现状进行了全面回顾和总结,重点在介绍相关概念和进展,并针对我国海洋渔业科研和管理中过于强调区域重要性和种类经济价值、而忽略具体生境保护的现实,提出了相应的建议,以期为我国渔业的科学管理和及其可持续发展提供参考。     

Predator and prey events at the entrance of a surface-oriented fish collector at North Fork Dam,Oregon

Quantifiable estimates of predator–prey interactions and relationships in aquatic habitats are difficult to obtain and rare, especially when individuals cannot be readily observed. To overcome this observational impediment, imaging sonar was used to assess the cooccurrence of predator-size fish and juvenile salmonids, Oncorhynchus spp., at the entrance to a floating surface collector (FSC) in the forebay of North Fork Dam on the Clackamas River, Oregon (USA). Imaging sonar can be used to transform active sound waves into visual data, making it possible to obtain continuous underwater observations on the presence and interspecific interactions between predator-size fish and prey (juvenile salmonids). Hourly counts of smolt-size fish tracks, diel phase, water clarity and river discharge were used as covariates within a zero-inflated Poisson model to determine how these factors may influence the number of predators in front of the FSC. Both the number of smolt-size fish tracks and diel phase had the strongest effects on the number of predator-size fish tracks, with more predator-size fish tracks observed during the daytime, and as the number of smolt-size fish tracks increased. Additionally, the presence of predator-size fish may affect the abundance and direction of travel of juvenile salmonids, as fewer smolt-size fish were observed when predators were present, and a greater proportion of smolt-size fish were observed travelling away from the FSC when predator-size fish were present. This study provides estimates of predator and prey fish abundance in the vicinity of surface collection systems at moderate-sized hydropower projects and could help resource managers better understand mechanisms that can influence the survival and passage behaviour of juvenile salmonids using surface collection structures at dams.     

Priority habitats for the conservation of large river fish in the Ganges river basin

• 1. Three classes of habitat used by groups of fish species classified as conservation and management priorities were developed for the Gerua River (also known as the Girwa River, Karnali River) in the Ganges river basin. This river is large (mean annual discharge ca 1500 m³ s^?1, up to 900 m wide), surrounded by protected lands of India and Nepal, and upstream of major diversions and river alterations.
• 2. Fish and habitat sampling was conducted at 45 sites from 2000 to 2003. Data were analysed for 2172 fish of 14 species. Species and life stages found occupying a statistically distinct subset of the river habitats were grouped to identify classes of river habitat for conservation.
• 3. Most species and life‐stage groups specialized on specific habitat conditions revealed by multivariate analyses of variance and a principal component analysis. The most numerous and diverse group (six species, 15 life stages) was associated with deep depositional habitats with sandy substrate. Two species covering three life stages were primarily oriented to erosional habitat marked by fast current velocity with pebble and cobble substrate. A third group of three species of adults and juveniles were intermediate in habitat use.
• 4. River conservation for fish faunas should maintain both erosional and depositional channel habitats with depths, substrates, and current velocity inclusive of the ranges reported. The erosional and depositional nature of the key habitats requires that rivers be maintained with flows capable of channel‐forming functions.

Copyright © 2006 John Wiley & Sons, Ltd.     

Homing experiments with parr, smolt and residents of anadromous Arctic char Salvelinus alpinus and brown trout Salmo trutta: transplantation between neighbouring river systems

Abstract –  Olfaction is decisive for the homeward migration of anadromous salmonids. Two different olfactory hypotheses for explaining how this mechanism works have been proposed (the imprinting and the pheromone hypothesis), and they differ with regard to the origin of the odours that define home. The pheromone hypothesis assumes that fish respond to strain-specific pheromones and that no imprinting is necessary. The imprinting hypothesis assumes that juvenile fish become imprinted to odours of abiotic or biotic origin in natural rivers; the imprinting may be a single event or may occur sequentially during downstream migration as smolts. The two hypotheses were challenged by reciprocal transplantation of parr, residents and smolt of Arctic char ( Salvelinus alpinus ) and brown trout ( Salmo trutta ) between the Salangen and the Løksebotten rivers. Both rivers empty into the Salangen Fjord, Norway, about 10 km apart. Salangen Arctic char released in the Løksebotten River, and Løksebotten brown trout released in the Salangen River (parr, resident and smolt) initiated spontaneous homeward migration without preceding contact with home stream water. This indicates that site imprinting (single or sequential) could not have been involved. In the sea, the released fish apparently integrated into the migratory system of relatives from their river of origin. Recapture rates did not differ for fish allowed to receive single or sequential imprinting.     

Spatial distribution of ocean habitat of yearling Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon off Washington and Oregon,USA

We determined the habitat usage and habitat connectivity of juvenile Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon in continental shelf waters off Washington and Oregon, based on samples collected every June for 9 yr (1998–2006). Habitat usage and connectivity were evaluated using SeaWiFS satellite‐derived chlorophyll a data and water depth. Logistic regression models were developed for both species, and habitats were first classified using a threshold value estimated from a receiver operating characteristic curve. A Bernoulli random process using catch probabilities from observed data, i.e. the frequency of occurrence of a fish divided by the number of times a station was surveyed, was applied to reclassify stations. Zero‐catch probabilities of yearling Chinook and yearling coho salmon decreased with increases in chlorophyll a concentration, and with decreases in water depth. From 1998 to 2006, ～ 47% of stations surveyed were classified as unfavorable habitat for yearling Chinook salmon and ～ 53% for yearling coho salmon. Potentially favorable habitat varied among years and ranged from 9 856 to 15 120 km² (Chinook) and from 14 800 to 16 736 km² (coho). For both species, the smallest habitat area occurred in 1998, an El Niño year. Favorable habitats for yearling Chinook salmon were more isolated in 1998 and 2005 than in other years. Both species had larger and more continuous favorable habitat areas along the Washington coast than along the Oregon coast. The favorable habitats were also larger and more continuous nearshore than offshore for both species. Further investigations on large‐scale transport, mesoscale physical features, and prey and predator availability in the study area are necessary to explain the spatial arrangement of juvenile salmon habitats in continental shelf waters.     

Environmental DNA reveals the temporal and spatial extent of spawning migrations of European shad in a highly fragmented river basin

1. Artificial barriers on lowland rivers impede the spawning migrations of anadromous fishes, preventing access to historical spawning areas. In the cryptic European shads Alosa alosa and Alosa fallax (‘shad’ hereafter), this has resulted in population declines across their range. Conservation programmes aim to facilitate the passage of migrators over these barriers and so require baseline information on the spatial and temporal extent of current migrations.
2. Here, a shad-specific environmental DNA (eDNA) assay was used to quantify the spatial extent of shad spawning migrations in the River Severn basin, western England. This basin is characterized by the presence of multiple barriers in the lower catchment. In 2017, the eDNA assay was piloted in the River Teme, an important shad spawning tributary, and then applied in 2018 and 2019 across the lower Severn basin.
3. In all years, shad DNA was detected between mid-May and mid-June, with the maximum spatial extent of shad distribution being in early June when shad eDNA was detected upstream of weirs that were generally considered as impassable. In 2018, this included the detection of shad above the most upstream weir on the main River Severn that required individual fish to have passed six weirs.
4. Although barriers inhibit the spawning migrations of shad, this eDNA assay showed that some highly vagile individuals might be able to ascend these barriers and migrate considerable distances upstream. This suggests that efforts to increase the permeability of these barriers could result in relatively high numbers of migrating shad reaching upstream spawning areas. These results demonstrate that this eDNA assay could also be used across their range, to further quantify the spatial extent of their spawning, including in highly fragmented rivers and those where shad are believed to spawn only occasionally and are rarely observed.

     

Seasonal migrations of adult and sub‐adult redband trout in a high desert basin of Eastern Oregon,USA

Abstract – Redband trout (Oncorhynchus mykiss gairdneri) migrations were tracked between March 2007 and June 2009 in the Donner und Blitzen River, Oregon, USA, using radio telemetry and PIT tags. We investigated the upstream extent and timing of spawning migrations for two groups of trout, considered the factors that influenced the rate of trout migration and explored the seasonal patterns of redband trout migration related to temperature and flow conditions. We found that trout made long‐distance migrations (up to 91 km) to spawn. Spawning trout from the lower river and middle river migrated to the same reaches, but lower river trout reached spawning habitats later than individuals from the middle river. Migration rate had a positive relationship with fork length and mean river discharge. We also found that redband trout made upstream spring migrations as sub‐adults and as adults. Whereas adult trout migrated to spawn, immature individuals migrated to river segments with more favourable thermal conditions. In both cases, migrations occurred where seasonally appropriate or life‐stage‐specific habitat patches for growth, survival, or reproduction were spatially segregated.     

Levels of Renibacterium salmoninarum antigens in resident and anadromous salmonids in the River Ellidaár system in Iceland

In relation to stock enhancement programmes, wild salmon broodfish have been routinely screened for the presence of Renibacterium salmoninarum antigens (Rs‐Ag) for decades. A sudden increase in the prevalence of Rs‐Ag experienced caused extensive problems to this industry as eggs from positive fish are discarded. The prevalence and level of Rs‐Ag were examined in resident and anadromous salmonids in the River Ellidaár system and the progress of Rs‐Ag in a cohort of salmon followed. Both prevalence and Rs‐Ag levels were high in resident salmonids and emigrating salmon smolts in the river system. When the smolts re‐entered their home river as adults the following summer, they were almost free of Rs‐Ag, but the longer they stayed in the river, the more Rs‐Ag they acquired; the majority being positive at spawning. This study demonstrates a high level of Rs‐Ag in salmonids in the River Ellidaár system which significantly reduces in the salmon during its seawater phase. Accordingly, it seems ideal to sample salmon broodfish as soon as possible after ascending the river and subsequently transfer to Rs‐free environment for storage until stripping, which could result in lower Rs‐prevalence and minimize the problems that stock enhancement programmes have faced due to Rs‐positive wild broodfish.