Historical channel analysis and its application to riparian and aquatic habitat restoration

• 1 The planning, design and evaluation of a restoration project should be guided largely by an understanding of past channel changes.
• 2 A historical analysis can sometimes reveal underlying causes of channel change and document prior habitat conditions, both useful in setting appropriate objectives for restoration.
• 3 Restoration planning should address the historical causes and patterns of channel degradation that cannot be detected by examining current conditions alone. Moreover, ongoing adjustments in the channel and changes in the catchment must be understood when interpreting channel changes following construction of restoration projects.
• 4 Changes in channel form (and the independent geomorphological variables of run-off and sediment load from the catchment) can be documented from a variety of sources, including historical maps, boundary lines, aerial photography, bridge and pipeline surveys, gauging records, field evidence and archival sources. Historical riparian vegetation, and use by fish and wildlife, may also be documented from early survey records, photographs and written accounts.
• 5 Historical analysis should cover an area large enough to capture all events potentially influencing the project reach. The entire catchment upstream should be examined to identify events affecting the flow regime and sediment load, such as deforestation or dam construction. For channels in erodible alluvium, the study should include the channel downstream to the first stable grade control to capture events whose effects may propagate upstream, such as channelization or base lowering.
• 6 Application of historical channel analysis to the San Luis Rey River in California served as a basis for evaluating the potential for (and hydrological constraints upon) riparian restoration.

     

Fish assemblage structure and aquatic pollution in a Brazilian stream: some limitations of diversity indices and models for environmental impact studies

Abstract –  The aim of this study was to describe and quantify the effect of aquatic pollution on the fish assemblage structure of the Corumbataí River (Brazil), by comparing two sites with different water quality characteristics. The results revealed that abundance of individuals was low at the polluted site (B). However, the two sites did not differ significantly in species richness (total and average). This fact contradicts theories stating that portions where the transverse area of the channel is larger should present a higher biological richness. It was also observed that the ichthyofauna of site B had higher evenness, and, consequently, a tendency to a higher diversity than that at site A. This demonstrates that diversity estimates should be used cautiously in environmental impact studies, as they do not necessarily indicate better conditions of communities living in more preserved environments.     

Perceptual constraints on stream fish habitat selection: effects of food availability and water velocity

Abstract– Habitat selection theory assumes that individuals either know the quality of habitats a priori or can learn it through experience. This work tests the effects of total food supply and of water velocity on the ability of drift-feeding stream fish ( Rhinicthys atratulus ) to discriminate between two patches in a laboratory flow-tank that differ only in the amount of food in the patch. If the fish can discriminate between the patches, their distributions should be predicted by ideal free distribution models; otherwise, their distributions should be random. The results show that at high total food supply levels, fish distributions differ from random in general agreement with ideal free distribution models; total food supply decreases, fish distributions become random, indicating that total food supply levels affect the ability of fish to discriminate between habitats that differ only in food supply. Increased water velocity was expected to affect fish distributions similarly, but its effect was not significant. The results suggest that habitat selection theory should consider both differences between habitats and the ability of fish to perceive those differences.     

Growth and mortality of prairie stream fishes: relations with fish community and instream habitat characteristics

Abstract – Few studies have been conducted to describe the age structure, growth rates and mortality of fishes in small stream ecosystems. The purpose of this study was therefore to determine age structure, growth rates and mortality (i.e., total annual mortality and, age-specific mortality) of central stonerollers Campostoma anomalum , creek chubs Semotilus atromaculatus , red shiners Cyprinella lutrensis and green sunfish Lepomis cyanellus from 13 streams on Fort Riley Military Reservation, Kansas, using incremental growth analysis. Further, we were interested in determining the influence of fish community and instream habitat characteristics on growth rates. The age structure of central stonerollers, creek chubs, and red shiners was dominated by young individuals (i.e., less than age 2); however, over 60% of the green sunfish were age 2 to age 4. Mean total annual mortality was >60% for cyprinids and averaged approximately 44% for green sunfish. The age-specific mortality of central stonerollers and red shiners was generally less than 45% between age 0 and 1 and increased to over 85% for fishes greater than age 1. Fish community characteristics (e.g., catch per unit effort of trophic guilds) and chemical habitat (e.g., total phosphorous) were not related to growth rates ( P >0.05). Growth of central stonerollers was not significantly correlated with physical habitat ( P >0.05). However, the growth increments of creek chubs, red shiners, and green sunfish were related to the amount of woody debris (e.g., total woody debris, log complex habitat; r >0.60; P ≤0.05). The results of this study provide important information on the population dynamic rate functions of cyprinid and green sunfish populations in small prairie streams. Furthermore, these data suggest that woody debris is important habitat influencing growth of stream fishes. ^Note     

Effect of predation and habitat quality on growth and reproduction of a stream fish

Billman EJ, Tjarks BJ, Belk MC. Effect of predation and habitat quality on growth and reproduction of a stream fish.
Ecology of Freshwater Fish 2011: 20: 102–113. © 2010 John Wiley & Sons A/S Abstract – Anthropogenic disturbances are rarely independent, requiring native fishes to respond to multiple factors to persist in changing environments. We examined the interaction of predation environment (presence of introduced brown trout, Salmo trutta) and habitat quality on growth and reproduction of southern leatherside chub, Lepidomeda aliciae, a small‐bodied stream fish native to central Utah, USA. Southern leatherside chub were sampled from four streams representing a complete two‐factor cross of predation environment and habitat quality. Growth was estimated using increment analysis of annuli on otoliths, and reproductive traits were measured for both sexes. Southern leatherside chub growth was greater in high‐quality than in low‐quality habitats, and greater in predator than in nonpredator environments. However, fish exhibited a greater growth response to presence of brown trout in low‐quality habitats. Southern leatherside chub growth followed predictions of plastic responses to resource availability based on habitat quality and predation environment (lethal vs. nonlethal effects). Reproductive allocation (gonad wet mass) was significantly greater in low‐quality versus high‐quality habitats, but was unaffected by predation environment. Other female life‐history traits were affected either by both effects or their interaction. Reproductive responses to habitat quality and predation environment were consistent with predictions based on differential mortality. Southern leatherside chub growth and reproduction responded differently to the combination of habitat quality and predation environment, thus demonstrating the importance of assessing interacting effects of anthropogenic disturbances to more fully comprehend impacts on native species and to appropriately manage, recover and restore these species and their habitats.     

Diurnal stream habitat use of juvenile Atlantic salmon, brown trout and rainbow trout in winter

Abstract  The diurnal winter habitat of three species of juvenile salmonids was examined in a tributary of Skaneateles Lake, NY to compare habitat differences among species and to determine if species/age classes were selecting specific habitats. A total of 792 observations were made on the depth, velocity, substrate and cover (amount and type) used by sympatric subyearling Atlantic salmon, subyearling brown trout and subyearling and yearling rainbow trout. Subyearling Atlantic salmon occurred in shallower areas with faster velocities and less cover than the other salmonid groups. Subyearling salmon was also the only group associated with substrate of a size larger than the average size substrate in the study reach during both winters. Subyearling brown trout exhibited a preference for vegetative cover. Compared with available habitat, yearling rainbow trout were the most selective in their habitat use. All salmonid groups were associated with more substrate cover in 2002 under high flow conditions. Differences in the winter habitat use of these salmonid groups have important management implications in terms of both habitat protection and habitat enhancement.     

Effects of habitat and internal prey subsidies on juvenile coho salmon growth: implications for stream productive capacity

Abstract –  To evaluate the effects of habitat, foraging strategy (drift vs. limnetic feeding) and internal prey subsidies (downstream transport of invertebrate drift between habitats) on fish production, we measured the growth of juvenile coho salmon confined to enclosures in flowing (pond inlets and outlets) or standing water (centre of pond) habitats in a constructed river side-channel. The effects of habitat and foraging strategy on fish growth were mediated primarily through habitat effects on prey abundance. Invertebrate drift biomass was nearly an order of magnitude higher at pond inlets relative to outlets. Drift-feeding coho in inlet enclosures grew 50% faster than drift-feeding coho at pond outlets or limnetic feeding coho in the centre of ponds, suggesting that elevated drift at inlets was sufficient to account for higher inlet growth rates. Forty per cent of prey biomass in stomachs was terrestrial in origin. These results indicate that, in addition to dependence on external terrestrial subsidies, streams with alternating slow and fast water (i.e., pool-riffle) sequences are also characterised by internal prey subsidies based on transport of drifting invertebrates from refuge habitats (high velocity riffles) to habitats more suitable for drift-feeding predators (e.g., pools), which may result in higher maximum fish growth in systems where internal subsidises are large. Restoration of small streams to maximise productive capacity for pool-rearing salmonids will require a better understanding of the length and interspersion of habitats that maximises both internal prey subsidies and available rearing habitat for juvenile salmon.     

Effects of within-patch habitat structure and variation on fish assemblage characteristics in the Bernecei stream, Hungary

Abstract –  Over a 3-year period we examined variability in physical habitat structure and species richness, abundance and assemblage composition of fishes in 13 habitat patches in the Bernecei stream, Hungary. Principal component analysis of habitat structure data from patches elucidated a riffle-run-pool habitat gradient across patches. Temporal habitat variability increased significantly from riffle to pool patches. Fish assemblage characteristics displayed relatively continuous change over the habitat gradient and were relatively stable within patches. Assemblage structure properties (e.g., species richness) displayed different responses to the habitat gradient and to within-patch habitat variability. In general, pool patches had more diverse assemblages and greater within-patch assemblage variability than riffle patches. However, within-patch dynamics were largely determined by the population dynamics of a habitat generalist (i.e., minnow). Broad scale environmental variability (i.e., a catastrophic 100-year flood) also appeared to affect within-patch fish assemblage characteristics. Our results demonstrate that fish assemblage structure is influenced by physical variability (i.e., both floods and spatio-temporal habitat variability) within the Bernecei stream.     

Movements of creek chubs, Semotilus atromaculatus, among habitat patches in a plains stream

Abstract –  We studied summer movement patterns of creek chubs, Semotilus atromaculatus, in a low-gradient, sand-bottomed stream on the western plains of the United States. Creek chubs were highly associated with patches of cover consisting of wood or macrophytes. Movements among 37 patches in a 1.1-km segment were assessed in a mark-recapture study. Over 2-week intervals, 44% of recaptured fish changed patches. Net distances moved ranged from 4 to 606 m, median distance moved was 49 m. Of fish recaptured repeatedly during the four sampling periods, most (65%) changed patches at least once, but few were consistently mobile. Inter-patch distance was an important variable with a negative effect on creek chub movements. Inter-patch cover was less important, but had a positive effect on movements. Frequent, short-distance movements among habitat patches in summer are a component of the ecology of creek chubs and the spatial arrangement of patches, and intervening stream conditions appear to mediate those movements.     

Dispersal ability determines the genetic effects of habitat fragmentation in three species of aquatic insect

• 1. The dispersal ability of species and the geographic scale of habitat fragmentation both may influence the extent of gene flow between fragments, but their interactions have rarely been tested, particularly among co‐occurring species.
• 2. Population genetic structures of three species of aquatic insect were compared in streams fragmented by reservoirs and in unfragmented streams in north‐eastern Japan, using 52, 37, and 58 RAPD markers. The three species studied included a strong disperser Cincticostella elongatula (Ephemeroptera: Ephemerellidae), an intermediate disperser Stenopsyche marmorata (Trichoptera: Stenopsychidae), and a weak disperser Hydropsyche orientalis (Trichoptera: Hydropsychidae).
• 3. The patterns of genetic isolation by distance (IBD) supported a priori hypotheses of dispersal ability. The strong disperser (C. elongatula) exhibited significant IBD only at the largest spatial scale studied (among drainages, r=0.50, P<0.01). The intermediate disperser (S. marmorata) showed IBD both within (r=0.22, P<0.01) and among (r=0.45, P<0.01) drainages. The weak disperser (H. orientalis) did not exhibit significant IBD at any scale.
• 4. Pairwise genetic differentiation (θ) indicated that neither the weak disperser nor the strong disperser were genetically differentiated above and below reservoirs when compared with reference sites. This was in contrast to previous results for S. marmorata, for which subpopulations were genetically fragmented across larger (>4.1 km), but not smaller (<2.9 km) reservoirs.
• 5. We suggest that intermediate dispersers, i.e. those at equilibrium between migration and genetic drift within drainages, are more likely to be affected by fragmentation than either strong or weak dispersers. Intermediate dispersers could therefore be used as indicator species in studies aimed at detecting the effects of distance between habitat fragments (e.g. reservoir size) for conservation planning. Copyright © 2010 John Wiley & Sons, Ltd.

     

Physical habitat utilization of fish in a Sonoran Desert stream, Arizona, southwestern United States

Abstract– The physical habitat utilization of 7 species of native fishes in a Sonoran Desert stream, Aravaipa Creek, Arizona is described. The species occupied significantly different depths and velocities of water. Longfin dace ( Agosia chrysogaster ), speckled dace ( Rhinichthys osculus ) and loach minnow ( Tiaroga cobitis ) used similar depths and velocities. Two of the three larger species (Sonora sucker [ Catostomus insignis ] and roundtail chub [ Gila robusta ]) used areas of greater depth and reduced velocity. Desert sucker ( Catostomus clarki ) grouped with loach minnow and speckled dace in the velocity of water occupied, but utilized deeper waters. The spikedace ( Meda fulgida ) aligned very closely with desert sucker in use of all 3 physical habitat variables.     

Strawberry creek on the University of California,Berkeley campus: A case history of urban stream restoration

1. Strawberry Creek (37°52′ N; 122°15′ W) is the major focus of open space on the University of California, Berkeley (Alameda County, California, USA) campus; it provides visual amenity and variety, riparian and wildlife habitat, and educational and recreational opportunities. 2. Since the beginning of this century, urbanization of the catchment, channel alteration and water quality degradation combined to cause deterioration of the creek's habitat and overall environmental quality; this was manifested by a marked absence of flora and fauna, obvious water pollution and severe erosion. 3. In 1987 a restoration project was undertaken that focused on water-pollution and erosion-control measures. In 1989, native three-spined sticklebacks (Gasterosteus aculeatus) were successfully reintroduced. Family Biotic Index scores for the macroinvertebrate community indicated a change from the ‘poor’ water quality conditions in 1986 to ‘good’ water quality in 1991. 4. Environmental education programmes now involve over 1500 students who use the creek each year in laboratory exercises; a popular natural history and conservation walking-tour guidebook has also been prepared. 5. On-going restoration efforts include additional reintroductions of other native species, further environmental education efforts and monitoring. 6. Obstacles and key factors that led to the successful implementation of this project are presented to assist in implementing similar ecological restoration projects of urban streams.     

Effect of habitat type on growth and diet of brown trout, Salmo trutta L., in stream enclosures

The effect of habitat on the growth and diet of brown trout, Salmo trutta L., stocked at the same densities in nine stream enclosures, comprising three habitat types of different quality, were tested. The habitats, which were created based on microhabitat preference data, were a shallow water habitat lacking cobbles (habitat 1), a deeper, mixed cobble-bottomed (128-384 mm diameter) habitat (habitat 2) and a large cobble-bottomed (256-384 mm) habitat of intermediate depth (habitat 3). Brown trout were found to have greater increases in total biomass in habitats 2 and 3 than in habitat 1. The pattern for length did not follow that of biomass as trout had greater increases in total length in habitat 2 than in the other two habitats. Biomass of food in trout diets reflected habitat-specific fish biomass changes, with a greater total biomass of prey as well a greater biomass of the leech, Erpobdella, in habitats 2 and 3 than in habitat 1. There were no habitat-specific differences in the biomass of benthic or drifting invertebrates in the enclosures, with the exception of a tendency for an effect of habitat on the biomass of Erpobdella. Although there may have been habitat-specific differences in food resources that were not detected, it is believed that the higher biomass growth in habitats 2 and 3 may have reflected differences in cover afforded by the deeper water and coarser substrates and/or improved foraging opportunities facilitated by the larger volumes of water in the deeper habitats in which the trout could search for prey.     

Influences of local habitat and stream spatial position on fish assemblages in a dammed watershed,the Qingyi Stream,China

Abstract – Identifying the underlying mechanisms that explain the spatial variation in stream fish assemblages is crucial for the protection of species diversity. The influences of local habitat and stream spatial position on fish assemblages were examined from first‐order through third‐order streams within a dammed watershed, the Qingyi Stream, China. Based on linear regression models, the most important environmental variables influencing fish species richness were water temperature and wetted width, but stream spatial position variables were less important. Using canonical correspondence analysis, five environmental variables were identified to significantly influence fish assemblages, including three habitats (elevation, substrate and water depth) and two spatial variables (C‐link and Link). Our results suggest that, in a heavily dammed watershed, by blocking the migration routes of fishes, dams weaken the influence of stream spatial position on fish species richness. However, fish species compositions are significantly influenced by both local habitat environment and stream spatial position, which is perhaps owing to the distribution of fish species according to ecological requirements not related to spatial processes.     

Short-term habitat use by young grayling, Thymallus thymallus L., under variable flow conditions in an experimental stream

Abstract  In an experimental stream containing available refuge zones, moderate and instantaneous flow variations did not cause high mortality or substantial increase in downstream migration of 2-month-old grayling, Thymallus thymallus L. Fish were able to react rapidly to spate simulations by a change in space utilization determined by changes in water velocity patterns. Reaction of fish to these experimental flow variations corresponded to a refuge strategy, i.e. seeking shelter and minimizing the distance to find it.     

A patch perspective on summer habitat use by brown trout Salmo trutta in a high plains stream in Wyoming, USA

Abstract –  We quantified the use of habitat patches by brown trout, Salmo trutta , during summer conditions in a plains stream in the western United States. A Global Positioning System was used to map discrete habitat patches (2–420 m²) consisting of macrophytes, wood accumulation, or deep water. Habitat use by brown trout was monitored by radio telemetry. Brown trout used habitat in a nonrandom manner with 99% of all daytime observations and 91% of all nighttime observations occurring in patches that consisted of combinations of deep water, wood accumulations or macrophytes even though such patches constituted only 9.8% of the available habitat. Brown trout used deep water almost exclusively during the day but broadened their habitat use at night. Most fish stayed within a large plunge pool created by a low-head dam. This pool supplemented the deep-water habitat that was naturally rare in our study area and illustrates how human modifications can sometimes create habitat patches important for stream fishes.     

River bed construction: impact and habitat restoration for juvenile Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L.

The River Soya, Norway, was canalized for agricultural purposes. In order to compensate for damage to the Atlantic salmon, salmo salar L. and brown trout, Salmo trutta L. populations, different weirs were built. The aims of this study were firstly to analyse the effects of weirs covering the river bank and entire river bottom with blasted stones and secondly, to analyse the effects of sediments transported by freshets on the downstream salmon and trout populations after canalization. Restoration of the river bottom with blasted stones provided salmon with more substrate spaces. Densities of trout increased after the river bank was covered with stones. Sediments transported downstream from the canalized river stretch decreased the densities of juvenile salmon and trout.     

Seasonal variation in habitat use by salmon, Salmo salar, trout, Salmo trutta and grayling, Thymallus thymallus, in a chalk stream

Abstract A portable multi‐point decoder system deployed in a tributary of the River Itchen, a southern English chalk stream, recorded the habitats used by PIT‐tagged juvenile salmon, Salmo salar L., trout, Salmo trutta L. and grayling, Thymallus thymallus L., with a high degree of spatial and temporal resolution. The fishes’ use of habitat was monitored at 350 locations throughout the stream during September/October 2001 (feeding period) and January/February 2002 (over‐wintering period). Salmon parr tended to occupy water 25–55 cm deep with a velocity between 0.4 and 1.0 m s^?1. During both autumn and winter, first year salmon (0+ group) were associated with gravel substrate during the daytime and aquatic weed at night. In autumn, 1+ salmon were strongly associated with hard mud substrates during the day and with marginal tree roots at night. In winter, they were located on gravel substrate by day and gravel and mud at night. Trout were associated with a greater range of habitats than salmon, generally occupying deeper and faster water with increasing age. During the autumn, 0+ trout were located along shallow (5–10 cm) and slow (?0.1–0.4 m s^?1) margins of the stream, amongst tree roots by day and on silty substrates at night. During winter the 0+ trout occupied silty substrates at all times. As age increased, trout increasingly used coarse substrates; hard mud, gravel and chalk, and weed at night. All age groups of grayling (0+, 1+ and 2+) tended to occupy hard gravel substrate at all times and used deeper and faster water with increasing age. The 1+ and 2+ groups were generally found in water 40–70 cm deep with a velocity between 0.3 and 0.5 ms^?1, whilst the 0+ groups showed a preference for shallower water with reduced velocity at night, particularly in the winter. There were greater differences in the habitats used between species and age groups than between the autumn and winter periods, and the distribution of fish was more strongly influenced by substrate type than water depth or velocity. The results are discussed in relation to the habitat requirements of mixed salmonid populations and habitat management.