Distribution and genetic diversity of root‐knot nematodes (Meloidogyne spp.) in potatoes from South Africa

A molecular‐based assay was employed to analyse and accurately identify various root‐knot nematodes (Meloidogyne spp.) parasitizing potatoes (Solanum tuberosum) in South Africa. Using the intergenic region (IGS) and the 28S D2–D3 expansion segments within the ribosomal DNA (rDNA), together with the region between the cytochrome oxidase subunit II (COII) and the 16S rRNA gene of the mtDNA, 78 composite potato tubers collected from seven major potato growing provinces were analysed and all Meloidogyne species present were identified. During this study, M. incognita, M. arenaria, M. javanica, M. hapla, M. chitwoodi and M. enterolobii were identified. The three tropical species M. javanica, M. incognita and M. arenaria were identified as the most prevalent species, occurring in almost every region sampled. Meloidogyne hapla and M. enterolobii occurred in Mpumalanga and KwaZulu‐Natal, respectively, while M. chitwoodi was isolated from two growers located within the Free State. Results presented here form part of the first comprehensive surveillance study of root‐knot nematodes to be carried out on potatoes in South Africa using a molecular‐based approach. The three genes were able to distinguish various Meloidogyne populations from one another, providing a reliable and robust method for future use in diagnostics within the potato industry for these phytoparasites.     

Non-toxic control techniques for Microtus spp. in apple orchards1

Alternative control techniques to the use of endrin ground spray were investigated in apple orchards in Washington (US). Non-toxic control strategies using cultural practices proved highly successful in reducing high populations of Microtus montanus to low levels. Early spring raking and mowing followed by the application of herbicides to a strip along the tree line appeared to have the greatest effect. Regular mowing between the tree rows and the maintenance of bare ground under the trees prevented significant build-up of the population. Similar cultural work also substantially improved the efficacy of subsequent rodenticide applications. The economic impact of the vole damage on apple orchards, even those composed of mature trees, is substantial and the expense of intensive cultural work is justified where high vole populations are possible.     

Root-knot nematodes (Meloidogyne spp.) in Hungary1

During a routine survey which was conducted in three successive years, 1990–1992, in southeastern Hungary, it was found that Meloidogyne spp. are common on a wide host range in fields, glasshouses and polythene tunnels, especially in sandy soil between the Danube and Tisza rivers. Meloidogyne incognita, M. incognita acrita and M. arenaria were recorded to be the most important in glasshouses (at Hódmezóvásárhely, Csongrád, Mindszent, Fábiánsebestyén, Kistelek, Balástya, Szatymaz, Bordány, Mórahalom, Szeged, Apátfalva and Szegvár); M. hapla was found to be the most important species in the field (at Hódmezóvásárhely, Makó, Szeged, Szatymaz, Szentes, Domaszék, Mórahalom, Asotthalom, Bordány, Ulés, Zsombó, Balástya, Kistelek, Csanytelek, Forráskút and Rúzsa). M. thamesi was detected in certain cultivated plants and weed hosts (at Kistelek, Balástya, Rúzsa, and Gyula). Besides the cultivated plants, 41 weed plants, belonging to 34 genera in 22 families, were also found to be hosts for root-knot nematodes in fields and glasshouses. Meloidogyne naasi was found for the first time in Hungary on some grass hosts.     

The threat of root‐knot nematodes (Meloidogyne spp.) in Africa: a review

Meloidogyne species pose a significant threat to crop production in Africa due to the losses they cause in a wide range of agricultural crops. The direct and indirect damage caused by various Meloidogyne species results in delayed maturity, toppling, reduced yields and quality of crop produce, high costs of production and therefore loss of income. In addition, emergence of resistance‐breaking Meloidogyne species has partly rendered various pest management programmes already in place ineffective, therefore putting food security of the continent at risk. It is likely that more losses may be experienced in the future due to the on‐going withdrawal of nematicides. To adequately address the threat of Meloidogyne species in Africa, an accurate assessment and understanding of the species present, genetic diversity, population structure, parasitism mechanisms and how each of these factors contribute to the overall threat posed by Meloidogyne species is important. Thus, the ability to accurately characterize and identify Meloidogyne species is crucial if the threat of Meloidogyne species to crop production in Africa is to be effectively tackled. This review discusses the use of traditional versus molecular‐based identification methods of Meloidogyne species and how accurate identification using a polyphasic approach can negate the eminent threat of root knot nematodes in crop production. The potential threat to Africa posed by highly damaging and resistance‐breaking populations of ‘emerging’ Meloidogyne species is also examined.     

Control of root-knot nematodes (Meloidogyne spp.) in Hungary1

Under Hungarian climatic conditions, root-knot nematodes, and other phytoparasitic nematodes, generally cause damage in certain plant growing areas. These pests are present in glasshouses throughout the country. In the field the nematodes occur in sandy soil in the vegetable-growing areas of southern and central Hungary. The following species of root-knot nematodes have so far been reported to occur in Hungary: Meloidogyne incognita, M. arenaria, M. hapla, M. javanica, M. incognita acrita, M. thamesi and M. naasi. There are 10 specific nematicides registered for nematode control in the country. These chemicals are mainly applied in glasshouses where their use produces most economic return. Nematoderesistant cultivars are only available in the case of tomato. The nematodes cause the heaviest damage on glasshouse cucumber.     

Characterization of fungi (Fusarium and Rhizoctonia) and oomycetes (Phytophthora and Pythium) associated with apple orchards in South Africa

Several species of fungi and oomycetes including Fusarium, Rhizoctonia, Phytophthora and Pythium have been reported as root pathogens of apple where they contribute to a phenomenon known as apple replant disease. In South Africa, little is known about specific species in these genera and their pathogenicity toward apple. Therefore, these aspects were investigated along with the development and optimization of qPCR tests for detection and quantification of the most virulent oomycete species. In eight investigated orchards, the oomycete Phythophthora cactorum was widely distributed, while nine Pythium species were differentially distributed among the orchards. Pythium irregulare was the most widely distributed and the most virulent species along with P. sylvaticum, P. vexans and Ph. cactorum. Seven binucleate Rhizoctonia anastomosis groups (AGs) were also differentially distributed among the orchards, with the majority appearing to be non-pathogenic while certain AG-I and AG-F isolates exhibited low virulence on apple. In the genus Fusarium, F. oxysporum was widely distributed, but isolates were non-pathogenic. Fusarium solani and F. avenaceum were less frequently encountered, with only some isolates having low virulence. qPCR data obtained from seedling roots inoculated with the most virulent Pythium species (P. irregulare, P. sylvaticum and P. vexans) and the genus Phytophthora were not always reproducible between trials, or isolates of the same species. In general, seedling growth inhibition was associated with the presence of a low amount of pathogen DNA (±40 fg μl⁻¹ to 2 pg μl⁻¹) in roots. Pythium irregulare, although having the lowest DNA concentrations in roots, was the only species for which a significant negative correlation was found between seedling weight and pathogen DNA concentration.     

植物根结线虫基因组学研究进展

根结线虫是世界农业生产中危害最大的植物病原之一,目前仍缺乏安全有效的防治措施。深入揭示寄生线虫与植物之间互作的分子机制,利用生物技术进行抗性育种被认为是最有前景的抗线虫策略。在根结线虫基因组学研究方面,目前已经构建了北方根结线虫AFLP遗传连锁图谱,南方根结线虫和北方根结线虫基因组测序也已完成;基因组的注释和比较基因组学分析,较全面地描述了根结线虫的遗传组成;以差异表达分析和比较基因组学为主的方法鉴定了大量的重要基因;以RNA干扰、植物转化和蛋白互作为主的根结线虫基因功能研究也取得了一些进展。本文就根结线虫基因组学研究予以综述,并进一步探讨其研究方向和可持续抗线虫新策略的发展前景。     

Use of perennial cover crops to suppress weeds in Nicaraguan coffee orchards

Both uncontrolled weed growth and vegetation‐free orchard floors have been shown to affect coffee (Coflea arabica L.) negatively, but using cover crops as a solution has yielded conflicting results in different studies. In this study we tested the establishment success of three cover crop species under different management intensities and planting densities, as well as their long term weed‐controlling abilities and effects on weed community composition. Monthly manual weedings during the first 12 weeks after planting resulted in more rapid and extensive cover crop development compared with less intensive management. Transplanted Commelina diffusa Burm. f. grew most rapidly and controlled weeds by limiting light availability, but disappeared during the dry season and failed to establish at all on one of the farms. Arachis pintoi established and persisted for over 2 years, providing excellent weed control by outcompeting weeds for water and/or nutrient resources. Desmodium ovalifolium Wall required the longest time to establish and controlled weeds by an undetermined competitive mechanism. The sowing method of Desmodium led to intense intraspecific competition which probably decreased its effectiveness. Both Arachis and Desmodium led to lower relative abundances of grassy weeds and more perennial forbs, but total weed biomass was so low that these differences have no practical implications.     

香蕉品种对根结线虫病的抗性鉴定

在5个香蕉栽培品种对香蕉根结线虫抗病性测试中明确,威廉斯-F和北蕉表现中感,威廉斯-Y、粉蕉和 红蕉表现高度感病。     

Root‐knot nematodes (Meloidogyne spp.), a growing problem in French vegetable crops

Root‐knot nematode infestations have become an increasing source of concern in French vegetable production due to recent restrictions on the use of chemical nematicides and the banning of some of the most active compounds. This problem is likely to become particularly severe in the next few years. A survey, based on questionnaires to farmers, was carried out by INRA Sophia Antipolis (PACA centre) between 2007 and 2010 in collaboration with more than 30 research institutes and technical centres, groups of producers and chambers of agriculture. It showed that in the Provence–Alpes–Côte d’Azur (PACA) region, more than 40% of horticultural holdings are infested by Meloidogyne species. It is no longer possible to produce cucurbits on certain plots. Other regions are also affected. Other genera of nematodes that are more difficult for farmers to diagnose (Globodera, Heterodera, Pratylenchus, Ditylenchus) were sometimes detected. Alternatives to chemical control have been tested on several farms and have been found to be highly variable in efficiency. There is therefore a need for researchers and professionals (producers, technical advisers, etc.) to combine forces to monitor this plant health problem and to develop and test new, economically viable and sustainable control methods.     

Haplotype diversity of Tilletiopsis spp. causing white haze in apple orchards in Northern Italy

White haze (WH), a manifestation of extensive colonization of anamorphic smut fungi of the genus Tilletiopsis on the surface of apple fruit, has recently been described as a new postharvest disorder of the cultivar Elstar. This study shows that these fungi can also affect apple fruit of different cultivars prior to harvest, and therefore seriously compromise the quality of the produce in Northern Italy. In order to identify the Tilletiopsis taxa involved in the induction of WH in this region, 48 isolates, mainly derived from fruit samples, were analysed by DNA sequencing of the internal transcribed spacer region. Six haplotypes were identified that could be assigned to three different phylogenetic lineages, the T. washingtonensis group, the T. pallescens group and the Entylomataceae. More than 40% of the isolates were classified as T. washingtonensis which had not previously been associated with WH. Furthermore, this is the first study that reports the occurrence of this species on field‐grown fruit samples. The extensive overgrowth of apple fruit by Tilletiopsis spp., appearing erratically in the last decade, may be a consequence of moist weather conditions and novel cultural practices, such as the use of hail nets and the intensive application of foliar nutrients.     

Interaction of root-lesion nematodes, Pratylenchus thornei and P. crenatus, with the fungus Thielaviopsis basicola and a grey sterile fungus on roots of pea (Pisum sativum)

Pratylenchus thornei invaded excised pea roots in agar in greater numbers and penetrated the cortex more deeply than P. crenatus . Both species fed on the roots ectoparasitically and displaced root cells into the surrounding medium. The cytoplasm of cortical cells near cither nematode became granulated, with enlarged vacuoles and nuclei. P. thornei also caused these responses in the endodermis. Infection of the root surface with a grey sterile fungus inhibited invasion by P. crenatus and P. thornei . Infection by Thielaviopsis basicola inhibited P. thornei invasion but encouraged penetration by P. crenatus and the hyphae were found deeper in the cortex when P. crenatus was present.     

Screening of common bean (Phaseolus vulgaris) for resistance against temperate root-knot nematodes (Meloidogyne spp.)

BACKGROUND: An important part of the production area of common bean (Phaseolus vulgaris L.) in Belgium is located on the sandy soils of the provinces of Antwerp and Limburg where Meloidogyne chitwoodi (Golden), M. fallax (Karssen) and M. hapla (Chitwood) are present. The host plant status of ten bean cultivars for root‐knot nematodes was determined by evaluating penetration, development and egg mass formation after inoculation with second‐stage juveniles. RESULTS: The tested cultivars were poor to good hosts for M. chitwoodi, non‐hosts or bad hosts for M. fallax and excellent hosts for M. hapla. Significantly fewer M. fallax were found in the roots, and their development was delayed. Penetration of M. hapla took place over a longer period than that of M. chitwoodi and M. fallax. The number of mature females of M. chitwoodi in cv. Polder 6 weeks after inoculation was no different from that in other cultivars, although fewer egg masses were found on this cultivar in the screening test. There was no influence of M. chitwoodi on vegetative growth of cv. Polder. CONCLUSION: The differences found in host plant status of bean cultivars stress the importance of a correct diagnosis of the Meloidogyne species in agricultural fields. Cultivar Polder showed potential as a trap crop for M. chitwoodi. Copyright © 2011 Society of Chemical Industry     

Variability in the phloem restricted plant trypanosomes (Phytomonas spp) associated with wilts of cultivated crops

Plant trypanosomatids (Phytomonas spp) have been isolated from the crude sap of coconut tress and oil palm trees affected with Hartrot or Marchitex diseases in South America andAlpinia purpurata affected with wilt in the Caribbean. They are also commonly isolated from the fruits and latex of Euphorbiaceae or Asclepiadaceae. Thirty-fourPhytomonas stocks were studied by isoenzyme electrophoresis (11 loci) in order to investigate genetic variability in the intraphloemic group. Our results showed that variability in phloem restrictedPhytomonas is very high, and that Marchitez or Hartrot associated trypanosomatids are not readily separated into two distinct groups. Moreover, the two isolates fromAlpinia are very close to the other intraphloemic isolates. The results confirm the existence of several distinct groups, comprising of at least 2 groups of phloem restricted trypanosomatids, not related to the host species, 3 groups of latex trypanosomatids, and one group of fruit trypanosomatids.     

Dynamics of post‐harvest pathogens Neofabraea spp. and Cadophora spp. in plant residues in Dutch apple and pear orchards

Post‐harvest diseases of apple and pear cause significant losses. Neofabraea spp. and Cadophora spp. infect fruits during the growing season and remain quiescent until disease symptoms occur after several months in storage. Epidemiological knowledge of these diseases is limited. TaqMan PCR assays were developed for quantification of N. alba, N. perennans, C. malorum and C. luteo‐olivacea in environmental samples. Various host tissues, dead weeds and grasses, soil and applied composts were collected in 10 apple and 10 pear orchards in May 2012. Neofabraea alba was detected in 73% of samples from apple orchards and 48% from pear orchards. Neofabraea perennans was present in a few samples. Cadophora luteo‐olivacea was detected in 99% of samples from apple orchards and 93% from pear orchards, whilst C. malorum was not detected in any sample. In apple orchards, highest concentrations of N. alba were found in apple leaf litter, cankers and mummies, and of C. luteo‐olivacea in apple leaf litter, mummies and dead weeds. In pear orchards, N. alba and C. luteo‐olivacea were found in highest concentrations in pear leaf litter and in dead weeds. Substrate colonization varied considerably between orchards. The temporal dynamics of pathogens was followed in four apple orchards and four pear orchards. In apple orchards the colonization by pathogens decreased from April until August and increased from September until December. This pattern was less pronounced in pear. Knowledge on population dynamics is essential for the development of preventative measures to reduce risks of fruit infections during the growing season.     

First Report of the Root Lesion Nematode,Pratylenchus hippeastri,on Apple in South Africa

Journal of Plant Diseases and Protection - Root lesion nematodes (Pratylenchus spp.) are the most common plant-parasitic nematodes present in apple orchards in South Africa. During a survey...