Distribution of carbohydrates and related enzyme activities in yacon (polymnia sonchifolia)

Abstract

Yacon (Polymnia sonchifolia) plants originating from Andean highlands are known to accumulate a large amount of oligofructans in their tubers and tuberous roots (Ohyama et al. 1990; Asami et al. 1992). Asami et al. (1992) have reported that tubers and tuberous roots which were harvested in late fall contained about 57 and 66% respectively (on a dry matter basis) of oligofructans. However, the tubers, tuberous roots and shoots of the yacon contained only a small amount of starch and inulin. The tuberous roots of yacon which resemble those of sweet potato in appearance are usually eaten raw and are expected to become commercially valuable as a source of oligofructans.     

A Potato Collecting Expedition in the Province of Jujuy,Argentina and Disease Indexing of Virus and Fungus Pathogens in Andean Cultivars

A potato collecting expedition was carried out in the province of Jujuy, Argentina in March 24 to April 15, 2001. The objective was to collect local cultivars of potatoes and wild potato species, covering high mountain valleys not previously collected or areas where germplasm was not available. A total of 247 accessions was collected, 188 cultivated accessions of S. tuberosum subsp. andigenum, four of Solanum tuberosum subsp. tuberosum, two of S. curtilobum and 53 accessions of wild species. The wild species collected were S. acaule subsp. acaule, S. chacoense, S. infundibuliforme, S. megistacrolobum subsp. megistacrolobum, S. microdontum, S. gourlayi, S. × viirsooi and S. oplocense. Herbarium voucher specimens were obtained when possible. For the collection of cultivated potatoes, tubers were gathered from farmer's fields and in a few cases from stores or markets. Seed samples were generally obtained for the wild species. Detailed collection site data were recorded at every site. After breaking dormancy, the accessions of the cultivated species were screened for the presence of Potato virus Y (PVY), Potato virus X (PVX), Potato leafroll virus (PLRV), Potato virus S (PVS), Potato virus M (PVM), Potato virus V (PVV), Andean potato latent virus (APLV), Andean potato mottle virus (APMoV), Potato rough dwarf virus (PRDV), Potato spindle tuber viroid (PSTVd) and Spongospora subterranea f. sp. subterranea. PSTVd, APLV and PRDV were not detected, but different levels of infection are reported for the other pathogens assayed.     

Andean yacon root (Smallanthus sonchifolius Poepp. Endl) fructooligosaccharides as a potential novel source of prebiotics

The ability of three known probiotic strains (two lactobacilli and one bifidobacterium) to ferment fructooligosaccharides (FOS) from yacon roots (Smallanthus sonchifolius Poepp. Endl) was compared to commercial FOS in this study. Results indicate that Lactobacillus acidophilus NRRL-1910, Lactobacillus plantarum NRRL B-4496, and Bifidobacterium bifidum ATCC 15696 were able to ferment yacon root FOS. FOS consumption apparently depended on the degree of polymerization and the initial FOS composition. L. plantarum NRRL B-4496 and L. acidophilus NRRL B-1910 completely utilized 1-kestose molecules, while B. bifidum was able to utilize 1-kestose molecules as well as molecules with a higher degree of polymerization.     

Age of wheat and barley roots and infection by gaeumannomyces graminis var tritici

Seminal roots of wheat and barley seedlings were inoculated with G. graminis var tritici on regions 0, 5- and 15-days old, and assessed for intensity and extent of infection after standard times. Wheat roots were most heavily infected on young regions, whereas barley roots were most heavily infected on old ones. The effect of root age in wheat was similar in both unsterile and aseptic conditions, so it could not be ascribed to saprophytic rhizosphere micro-organisms interacting with G. graminis.The contrasting results for wheat and barley are explained by a single hypothesis, based on decreasing host-resistance in the root cortex but increasing resistance at or near the endodermis as the roots age. It is suggested that, under some conditions, even small amounts of non-pathogenic root cortex death can enhance infection by G. graiminis. This interpretation may explain several aspects of take-all and its biological control by other dark mycelial parasites.     

Inter-MITE polymorphisms of a newly identified MITE show relationships among sugarcane (Saccharum) species

Sugarcane, one of the most important tropical crops, belongs the genus Saccharum. This genus consists of six species, four cultivated and two wild. The domestication histories of the four cultivated Saccharum species is an interesting and important topic of study. Previous studies have categorized the four cultivated species into two groups, one consisting only of S. edule and the other comprising S. officinarum, S. sinense and S. barberi. All four species have inherited the genomic DNA of S. robustum, one of two wild relative species. Saccharum species have large genomes with complex structures, as evidenced by chromosomes with a high degree of polyploidy, alloploidy and aneuploidy. Miniature inverted-repeat transposable elements (MITEs) are class II (DNA) transposons that disperse throughout the plant genome. In this study, a Tourist family MITE sequence with 18/19-bp terminal inverted repeats and a 2-bp target site duplication was newly identified from genomic DNA of S. robustum. The abundant accumulation of this MITE sequence in the sugarcane genome enabled the application of inter-MITE polymorphism (IMP) analysis to Saccharum. IMP analysis revealed the genetic relationships among all six Saccharum species and the domestication histories of the four cultivated species.     

Chloroplast DNA Variation in the Most Primitive Cultivated Diploid Potato Species Solanum stenotomum Juz. et Buk. and its Putative Wild Ancestral Species using High-Resolution Markers

Solanum stenotomum Juz. et Buk. (2n = 2x = 24) is considered to be the most primitive diploid cultivated species from which all the other Andean cultivated potatoes were originated (Hawkes 1990). To disclose chloroplast DNA (ctDNA) variability and the maternal origin of S. stenotomum, 36 accessions of S. stenotomum and 86 accessions of putative wild ancestral species were determined for ctDNA types and analyzed by high-resolution markers (seven ctDNA microsatellites and an H3 marker). High-resolution markers discriminated 57 different ctDNAs (haplotypes), which were classified into the W-type ctDNA group and C-, S- and A-type ctDNA group, and within the latter group S- and A-type ctDNAs were distinct from each other among many different haplotypes mostly having C-type ctDNA. This ctDNA relationship supported our previous findings obtained for mostly Andean cultivated species (Sukhotu et al. 2004). Compared with other putative ancestral wild species, S. stenotomum showed somewhat limited ctDNA diversity, having two major haplotypes 1 and 2 also found in different wild species in different places. Therefore, the ctDNA in S. stenotomum was of at least dual origins either by successive domestication from different species or else by introgression after initial S. stenotomum arose.     

A recombination-derived mitochondrial genome retained stoichiometrically only among Solanum verrucosum Schltdl. and Mexican polyploid wild potato species

We previously found a specific DNA fragment, designated Band 1, in the cytoplasm of a Mexican hexaploid wild potato species, Solanum demissum, and varieties with the S. demissum cytoplasm. In this study, we show that Band 1 also occurs substoichiometrically in various species and varieties. The S. demissum DNA sequence harboring Band 1 was extended by genome walking to 7,040 bp, and whole-genome sequencing of the S. verrucosum genome generated a 10,794-bp contig with the corresponding sequence. Their 3′-terminal end sequences had 100 % homology with segment 2 of the S. tuberosum mitochondrial genome, proving that Band 1 originated from a recombination-derived mitochondrial genome. Both normal and recombination-derived mitochondrial genomes co-existed in Band 1 carriers. The presence or absence of Band 1 was surveyed for four accessions of tomato and wild relatives and 172 accessions of 38 Solanum species or potato and tuber-bearing wild relatives, mostly from Mexican species. Together, with the results of our previous survey (mostly for South American species), we conclude that Band 1 is retained stoichiometrically only among S. verrucosum and Mexican polyploid species, supporting S. verrucosum as a maternal ancestor for all Mexican polyploid species. The presence or absence of Band 1 was not uniform within these species and was not associated with ploidy, geographical distribution, or latitude. Several evolutionary hypotheses to explain intraspecific variation were discussed.     

Cadmium Accumulation and Translocation in Four Emergent Wetland Species

Emergent wetland plant species may exhibit different capacity for phytoremediation when used in constructed wetlands. To evaluate cadmium (Cd) remediation capacity of four emergent wetland species [Baumea juncea (R.Br.) Palla, Baumea articulata (R.Br.) S.T. Blake, Schoenoplectus validus (M.Vahl) A. & D.Löve, and Juncus subsecundus N.A. Wakef.], a glasshouse experiment was conducted in hydroponics to investigate the effects of Cd (0, 5, 10, and 20 mg L^?1) on plant growth and Cd uptake and translocation as well as uptake of other nutrients after 14 days. The relative growth rates of the three species changed little in various Cd treatments, but was severely inhibited for B. juncea at 20 mg Cd per liter treatment. Hence, the Cd tolerance index (root length in Cd treatment vs. control) was significantly lower in B. juncea compared to other species. Among the species, the highest concentration of Cd was in the roots of J. subsecundus, followed by S. validus, B. articulata, and B. juncea, while the lowest concentration of Cd was in the S. validus shoots. Of all the species, J. subsecundus had the highest bioconcentration factor (BCF) in shoots, whereas S. validus and B. juncea had the lowest BCF in rhizomes and roots, respectively. The translocation factor was significantly lower in S. validus compared to the other species. J. subsecundus had a higher Cd accumulation rate than the other species regardless of the Cd supply. The lowest allocation of Cd in shoots was recorded for S. validus and in roots for B. juncea. The concentrations of other elements (P, S, Ca, Fe, Cu, and Zn) in shoots decreased with Cd additions, but the interactions between Cd and other elements in roots varied with the different species. These results indicate that the four wetland species have good tolerance to Cd stress (except B. juncea at high Cd exposure), varying in Cd accumulation and translocation in tissues. These properties need to be taken into account when selecting species for wetlands constructed for phytoremediation.     

Genetic diversity and origin of cultivated potatoes based on plastid microsatellite polymorphism

The origin of cultivated potatoes has remaining questions. In this study, 237 accessions of all cultivated species and 155 accessions of wild species closely related to cultivated potatoes, including their putative ancestors, were analyzed using 15 plastid microsatellites (SSRs) to investigate genetic diversity and their relationships with the wild species. We here used polymorphic plastid SSRs we developed from potato plastid genome sequences as well as already known plastid SSR markers. All 15 loci were polymorphic and identified a total of 127 haplotypes. Dramatic decreases in levels of genetic diversity were revealed in landraces in comparison with wild ancestor species. The plastid SSR results showed a decrease in haplotype number and diversity from Peru to both north and south. Phylogenetic analysis revealed two distinct groups. One of them, group A, contained the majority of accessions of cultivated species of the Solanum tuberosum Andigenum group including all accessions of cultivated diploid and triploid cytotypes of this group (S. chaucha, S. phureja, and S. stenotomum by a former taxonomic system) and most of tetraploid accessions of the S. tuberosum Andigenum group (S. tuberosum subsp. andigenum), and the majority of accessions of wild ancestors from the northern members of the S. brevicaule complex. Another group B comprised most of the wild species accessions and almost exclusively hybrid cultivated species which have introgressed plastid genomes from the other wild gene pools. Lack of clustering of traditional cultivated species (as used above) support a revised group classification of S. tuberosum.     

Germination differentiation patterns of wild and domesticated columnar cacti in a gradient of artificial selection intensity

Germination of wild and managed populations of columnar cacti was compared to analyze differences associated to management intensity. The species studied: Polaskia chende, Escontria chiotilla, Myrtillocactus schenckii, Polaskia chichipe, and Stenocereus pruinosus are in a gradient from lower to higher management intensity, respectively. Within each species wild, silvicultural, and cultivated populations also represent a gradient from lower to higher management intensity. We hypothesized that seeds of plants under higher management intensity would require more water to germinate than others since managed environments are relatively wetter than unmanaged environments. Such pattern could be visualized within and among species according to management intensity. We tested germination of seeds from different populations of the different species to the water potentials: 0.0, ?0.2, ?0.4, ?0.6, ?0.8, and ?1.0 MPa. In all species studied seeds of managed populations had significantly more mass than seeds from wild populations. Each species had different susceptibility to water availability decrease, which could be related to particular adaptations to drought resistance. Stenocereus pruinosus and Polaskia chende were the most and least susceptible species, respectively. In control treatments of all species, seeds of managed populations had higher germination rate than seeds from wild populations, but when water availability decreased the pattern was the contrary. Our results suggest that artificial selection for larger fruits and heavier seeds in plants established in wetter environments have affected germination patterns. Although species have particular critical points of water availability for germination, differences in germination patterns are more pronounced according to management and artificial selection intensity.     

Polyphasic characterization of Brazilian Rhizobium tropici strains effective in fixing N2 with common bean (Phaseolus vulgaris L.)

Common bean (Phaseolus vulgaris) is native to the Americas, and Rhizobium etli is the dominant microsymbiont in both the Mesoamerican and the Andean centers of genetic diversification. Wild common beans are not found in Brazil, although the legume has been cropped in the country throughout time and all but one of the rhizobial species that nodulate it (Rhizobium gallicum) have been broadly detected in Brazilian soils. However, the majority of the effective rhizobial strains isolated so far from field-grown plants belong to R. tropici. This study describes the analysis of symbiotic and non-symbiotic genes of 15 effective R. tropici strains, isolated from four geographically distant regions in Brazil. With RFLP-PCR of the 16S and 23S rRNA genes and sequence analysis of 16S rRNA, two clusters were observed, one related to R. tropici type A and another to type B strains. Diversity in ribosomal genes was high, indicating that type A strains might represent a new species. High intraspecies diversity was also observed in the rep-PCR analysis with BOX, ERIC and REP primers. However, in the RFLP-PCR analysis of nifH and nodC genes, all R. tropici showed unique combinations of profiles, which might reflect an evolutionary strategy to maximize N₂ fixation.     

Genetic diversity of Bolivian wild potato germplasm: changes during ex situ conservation management and comparisons with resampled in situ populations

Potato wild relatives are important sources of novel variation for the genetic improvement of the cultivated potato. Consequently, many natural populations have been sampled and were deposited as accessions in gene banks around the world. Here we investigate to what extent the genetic variation of Bolivian wild potato species is maintained under gene bank conditions and how this diversity relates to that of current in situ populations. For this purpose, materials from seven potato species were screened for microsatellite variation. Genetic changes between different generations of ex situ germplasm were not observed for Solanum leptophyes and S. megistacrolobum, but were detected for S. neocardenasii and S. okadae, while each of the species S. acaule, S. avilesii and S. berthaultii showed stability in some cases and genetic change in others. The observed changes were ascribed to genetic drift and contamination resulting from human error during regeneration. Re-collected populations of six of the studied species showed highly significant genetic differences with the ex situ accessions that, apart from changes during ex situ maintenance, are most likely to be attributed to sampling effects during collecting and in situ genetic changes over time. The implications of the results for ex situ and in situ conservation strategies of wild potato species are discussed.     

青藏高原东北部4种灌木主根和侧根抗拉力学特性比较

[目的]开展青藏高原东北部黄土区4种灌木植物主根和侧根抗拉力学强度试验,探讨主根和侧根抗拉力学特性关系,为深入研究植物根系固土护坡力学机理提供参考。[方法]选取西宁盆地长岭沟流域作为研究区,对生长期为3 a的柠条锦鸡儿(Caragana korshinskii)、中宁枸杞(Lycium chinense)、白刺(Nitraria tangutorum)和霸王(Sarcozygium xanthoxylon)4种优势灌木主根和侧根进行室内单根拉伸试验,确定其主根和侧根抗拉力、抗拉强度和杨氏模量及其与根径之间的关系;在此基础上,进一步分析了4种灌木主根和侧根根径、抗拉力、抗拉强度和杨氏模量之间的关系。[结果]柠条锦鸡儿、中宁枸杞、白刺和霸王主根抗拉力分别为侧根的28.45,13.21,11.01,7.35倍,主根抗拉强度分别为侧根的0.67,1.17,0.68,1.22倍,主根杨氏模量分别为侧根的2.00,2.39,2.82,2.48倍。[结论] 4种灌木植物主根抗拉力均显著大于侧根;柠条锦鸡儿和白刺主根抗拉强度小于侧根,而中宁枸杞和霸王主根抗拉强度大于侧根;4种灌木植物主根杨氏模量显著大于侧根,说明其主根相对于侧根不易发生形变,对边坡浅层稳定性贡献亦显著于侧根。     

Development and use of microsatellite markers for genetic diversity analysis of cañahua (<Emphasis Type="Italic">Chenopodium pallidicaule</Emphasis> Aellen)

Cañahua (Chenopodium pallidicaule Aellen) is a poorly studied, annual subsistence crop of the high Andes of South America. Its nutritional value (high in protein and mineral content) and ability to thrive in harsh climates make it an important regional food crop throughout the Andean region. The objectives of this study were to develop genetic markers and to quantify genetic diversity within cañahua. A set of 43 wild and cultivated cañahua genotypes and two related species (Chenopodium quinoa Willd. and Chenopodium petiolare Kunth) were evaluated for polymorphism using 192 microsatellite markers derived from random genomic cañahua sequences produced by 454 pyrosequencing of cañahua genomic DNA. Another 424 microsatellite markers from C. quinoa were also evaluated for cross-species amplification and polymorphism in cañahua. A total of 34 polymorphic microsatellite marker loci were identified which detected a total of 154 alleles with an average of 4.5 alleles per marker locus and an average heterozygosity value of 0.49. A cluster analysis, based on Nei genetic distance, clearly separated from wild cañahua genotypes from the cultivated genotypes. Within the cultivated genotypes, subclades were partitioned by AMOVA analysis into six model-based clusters, including a subclade consisting sole of erect morphotypes. The isolation by distance test displayed no significant correlation between geographic collection origin and genotypic data, suggesting that cañahua populations have moved extensively, presumably via ancient food exchange strategies among native peoples of the Andean region. The molecular markers reported here are a significant resource for ongoing efforts to characterize the extensive Bolivian and Peruvian cañahua germplasm banks, including the development of core germplasm collections needed to support emerging breeding programs.     

Hybridization barriers between diploid Solanum tuberosum and wild Solanum raphanifolium

Wild potato germplasm represents a unique, diverse and accessible resource for disease and pest resistance, along with useful agronomic traits that may be introgressed into the cultivated potato (Solanum tuberosum L.). Hybridization of diploid wild Solanum species with haploids (2×) of cultivated potato (4×) is generally an effective technique for introducing genetic diversity and desirable traits into potato. However, in this study, hybridization barriers were found in crosses between S. tuberosum haploids and the wild species S. raphanifolium. Male sterility, likely due to nuclear-cytoplasmic interactions, was observed in some haploid tbr?×?S. raphanifolium hybrids. In addition, pollen-pistil incompatibilities were observed in backcross, F2, and reciprocal cross hybridization attempts that failed to produce seed. More crosses were successful when F1 clones were crossed as females to wild clones than to cultivated clones. When crosses were made in the other direction, with F1 hybrids used as male parents, seeds were almost never produced.     

<Emphasis Type="Italic">Achromobacter insolitus</Emphasis> and <Emphasis Type="Italic">Zoogloea ramigera</Emphasis> associated with wheat plants (<Emphasis Type="Italic">Triticum aestivum</Emphasis>)

This study reports for the first time the presence of diazotrophic bacteria belonging to the genera Achromobacter and Zoogloea associated with wheat plants. These bacterial strains were identified by the analysis of 16S rDNA sequences. The bacterium IAC-AT-8 was identified as Azospirillum brasiliense, whereas isolates IAC-HT-11 and IAC-HT-12 were identified as Achromobacter insolitus and Zoogloea ramigera, respectively. A greenhouse experiment involving a non-sterilized soil was carried out with the aim to study the endophytic feature of these strains. After 40 days from inoculation, all the strains were in the inner of roots, but they were not detected in soil. In order to assess the location inside wheat plants, an experiment was conducted under axenic conditions. Fifteen days after inoculation, preparations of inoculated plants were observed by the scanning electron microscope, using the cryofracture technique, and by the transmission electron microscope. It was observed that all isolates were present on the external part of the roots and in the inner part at the elongation region, in cortex cells, but not in the endodermis or in the vascular bundle region. No colonizing bacterial cells were observed in wheat leaves.     

Species differences in calcium and potassium distributions within plant roots

Abstract

The Ca and K distributions in the roots of soybean, kidneybean and corn were investigated in relation to their lateral movement within the roots using an electronprobe X-ray microanalyzer. In the corn roots, the accumulation site of Ca was the wall of the cortical cells and little Ca was detected in the stele, suggesting that apoplasmic movement of Ca was blocked by the endodermis. In the legume roots, Ca was detected at the wall of the endodermal and stelar cells as well as the cortical cells, suggesting that the endodermis of the legume roots was permeable to the apoplasmic movement of Ca. K was mainly found within the cells of the roots, suggesting symplasmic movement of K. Neither accumulation nor depletion of the cations at the soil-root interface was observed, but the concentrations of the cations at the root surface appeared to be reduced when the roots were grown in the soil.     

Accumulation and Distribution of Heavy Metals in Scirpus americanus and Typha latifolia from an Artificial Lagoon in San Luis Potosí, México

The concentrations of Pb, Cd, Cr, Mn and Fe were evaluated in leaves, stem and root of the Scirpus americanus and Typha latifolia aquatic macrophytes, which were collected from Tanque Tenorio, an artificial lagoon highly polluted by municipal and industrial wastewater. Some S. americanus and T. latifolia plants were collected from four different sites within Tanque Tenorio. The sites were chosen regarding their proximity with the main channel discharging wastewater into the lagoon. The results showed that S. americanus and T. latifolia have the ability to extract Pb, Cd, Cr, Mn and Fe from their water surroundings; on the whole, the roots presented higher concentrations of heavy metals than the stem and the leaves. The highest accumulation of heavy metals was observed in plants growing at the site near the channel entering the lagoon. S. americanus accumulated more Pb, Cr, Mn and Fe than T. latifolia; Cd concentrations were comparably the same in both species. This study provides information in relation to aquatic plants growing in polluted waters, which accumulate heavy metals. These findings are of interest pertaining to the removal processes for treating aquatic systems with heavy metal content.     

Nitrogen fixation in association with the root systems of goldenrods (Solidago L.)

The roots of seven species of goldenrod (Asteraceae: Solidago) were assayed for associative nitrogen fixation. We used the acetylene reduction method to measure N₂ fixation rates in sampling jars that contained roots of sampled plants and soil. The rate of C₂H₂ reduction in jars with S. rigida (12.9 ± 1.2 nmol h⁻¹, mean ± SE) and S. canadensis (6.0 ± 2.0 nmol h⁻¹) was significantly higher than in soil-only control jars. There was measurable C₂H₂ reduction in jars of the other five species, but the rates were not significantly different from controls. The rates of C₂H₂ reduction per root dry weight and per total plant dry weight also were higher for S. rigida and S. canadensis than for the other species.     

Characterization of resveratrol content in ten wild species of section Arachis, genus Arachis

Peanut is one of the few plants that synthesizes resveratrol, a phenolic compound of the stilbene class, which has been associated with reduced risk of developing chronic diseases, such as cancer, cardiovascular diseases, skin diseases, pulmonary diseases, diabetes and neurological diseases. Resveratrol was detected in different parts of the peanut plant, including roots, leaves, seeds and their derivatives. The wild species of the Arachis section are also strong candidates to synthesize resveratrol because they are phylogenetically closely related to cultivated peanut. Our objective was to characterize the resveratrol content in ten wild species of Arachis with three different genomes (A, B and K). The plant material was composed of leaves of the ten species treated (test) and not treated (control) with ultraviolet (UV) radiation. The test and control samples were extracted and the identification and quantification of resveratrol was performed using high performance liquid chromatography (HPLC). All species studied synthesized resveratrol and the concentrations ranged from 299.5 μg/g in A. kempff-mercadoi to 819.9 μg/g in A. cardenasii. DPPH antioxidant activity varied between 18.7 % for A. duranensis and 48.2 % in A. simpsonii. The results showed that wild Arachis species are a potential source of alleles for improvement of cultivated peanut, with the aim of achieving higher resveratrol content in leaves.