Collembolan trophic preferences determined using fatty acid distributions and compound-specific stable carbon isotope values

The trophic preferences of soil invertebrates such as Collembola are often determined by the analysis of gut contents, or through visual observations of the location of individuals. As an alternative approach, two species of Collembola, Folsomia candida and Proisotoma minuta, were offered a choice of the soil fungus Cladosporium cladosporioides or the bacterial feeding nematode Panagrellus redivivus; each exhibited distinct fatty acid profiles and stable carbon isotopic compositions. Over 21 days, the fatty acids i15:0, i17:0, 18:1(n-7) and 18:2(n-6) all increased in abundance in both collembolan species consistent with direct routing from the nematode dietary choice which contained a high concentration of these components. Collembolan fatty acid δ¹³C values increased by between 5.7 and 21.6‰ over 21 days reflecting those of the nematode diet. Therefore, both fatty acid profiles and δ¹³C values were consistent with a strong feeding preference of F. candida and P. minuta for the nematodes over the offered fungi. In fact, neither collembolan species consumed any detectable amount of C. cladosporioides. Comparison of the δ¹³C values of the 16:0 and 18:0 fatty acids (which are biosynthesised by the Collembola as well as directly incorporated from the diet) and the 16:1(n-7) and 18:2(n-6) components (which are not biosynthesised by the Collembola) demonstrated that the input of distinct pools of C can lead to large shifts in δ¹³C values between diet and consumer. The fatty acids that were not biosynthesised by Collembola better reflected the δ¹³C values of the diet helping to differentiate between biosynthesised and directly incorporated compounds; an important prerequisite in the interpretation of compound-specific δ¹³C values in trophic behaviour tests. The combination of fatty acid distributions and δ¹³C values is a significant improvement on traditional methods of examining feeding preferences, since it determines directly the assimilated dietary carbon rather than relying on indirect observations, such as the proximity of individuals to a defined food source.     

Tracking Collembola feeding strategies by the natural C signal of fatty acids in an arable soil with different fertilizer regimes

Compound specific stable isotope analysis (¹³C/¹²C ratio of fatty acids) was used to assess the allocation of plant carbon in soil microbiota, and to identify the trophic links to microbial grazers in an arable field with long-term mineral and organic fertilizer amendments. The feeding strategy of two dominant Collembola species, epedaphic Isotoma viridis and euedaphic Willemia anophthalma was determined. The investigation was conducted following a shift to amaranth, a C₄ plant, after 27 years of continuous C₃ crop rotation. The influence of new C₄ plant carbon was observed in microbial phospholipids (PLFAs) with higher δ¹³C recorded in C₄ amaranth than in C₃ clover soils. The strongest enrichment occurred in the fungal PLFA 18:2ω6,9c and bacterial PLFA 18:1ω9t with 11.2‰ and 6.6‰, respectively. However, other bacterial PLFAs showed no isotopic change, suggesting that the microbial community simultaneously utilized “new” and “old” plant carbon. The δ¹³C of Collembola fatty acids displayed species specific lipid pattern, which was affected by crop type, but not fertilizer amendments. Isotopic separation of Collembola lipids from amaranth and clover plots was more distinct in I. viridis than W. anophthalma. With up to 18‰, the enrichment in Collembola lipids was stronger than in microbial PLFAs, pointing to a distinct incorporation of carbon resources originating from the actual plant residues. The δ¹³C pattern in I. viridis indicated trophic links with bacteria, saprotrophic fungi and plant tissues, while saprotrophic fungi and plant tissues were accountable for the patterns observed in W. anophthalma.     

Taking it to the next level: Trophic transfer of marker fatty acids from basal resource to predators

Fatty acid (FA) analysis is used increasingly to investigate the trophic structure of soil animal food webs as the technique allows separation of the role of detrital resources such as bacteria, fungi and plant material for consumer nutrition. The applicability of FAs as biomarkers for different diets has been verified for Collembola and Nematoda. However, for the analysis of whole food webs it is crucial to know whether marker FA are valid for different taxa and whether they are transferred along the food chain to higher trophic levels, i.e. predators. Top-predators are integrators of lower level energy fluxes in food webs; therefore analysis of their FAs may allow to identify trophic pathways and to separate bacterial vs. fungal based energy channels. Chilopoda and Arachnida are among the main predators in soil food webs. Our aim was to test the applicability of marker FAs for these two predator taxa and to verify the trophic transfer of marker FAs of different basal resources via first order consumers into predators, i.e. over three trophic levels. Therefore, we investigated the transfer of FAs from different basal resources [fungi (Chaetomium globosum), plant leaf litter (Tilia europaea), Gram-positive (Bacillus amyloliquefaciens) and Gram-negative bacteria (Stenotrophomonas maltophilia)] via Collembola (Heteromurus nitidus) as first order consumers into predators [Lithobius forficatus (Chilopoda) and Pardosa lugubris (Arachnida)]. Fatty acid profiles of predators of food chains with different basal resources differed significantly. Marker FAs of basal resources were clearly detectable in predators, suggesting that FA analysis allows to separate trophic channels of soil food webs. By reflecting basal resources, FAs of predators allow tracking energy/resource fluxes through the food web and thereby clarifying the relative importance of bacterial vs. fungal vs. plant resources for soil animal food webs.     

Trophic transfer of fatty acids from gut microbiota to the earthworm Lumbricus terrestris L

The diet of earthworms includes soil organic matter, soil microbes and other microfauna, but the relative contribution of these dietary components to earthworm nutrition is not well known. Analysis of fatty acid (FA) profiles can reveal trophic relationships in soil food webs, leading to a better understanding of the energy and nutrient flows from microbiota to earthworms. The objective of this study was to determine the origin of FAs assimilated by the earthworm Lumbricus terrestris L. We analysed the pattern of FAs in: (i) the bulk soil, (ii) soil in the earthworm gut, (iii) the absorptive tissue of the earthworm gut wall, and (iv) the muscular layers of the earthworm body wall. Multivariate analyses performed on the FA profiles suggest that the microbial community in the earthworm gut differs from that in bulk soil. Diverse bacterial and fungal derived FAs, which earthworms cannot synthesize, were found in the earthworm gut wall and body wall, and in the neutral lipids (storage lipids) of the gut wall. The major compounds isolated were 20:4ω6, 20:5ω3 and 18:2ω6, followed by the monoenoic 18:1ω7 and 18:1ω9c, and the saturated 18:0. The microbial FA assemblage in the gut wall resembled the gut soil more than the bulk soil, and the body wall of L. terrestris showed the same microbial derived FA pattern as the gut wall, although at reduced concentrations. We propose the existence of a specific microbial community in the earthworm gut that provides FAs to the earthworm. It appears that L. terrestris may derive more of its energy and nutrients from gut specific microbiota than from microbiota already present in the ingested soil, based on the trophic relationships revealed through FA analysis.     

The fat that matters: Soil food web analysis using fatty acids and their carbon stable isotope signature

Chemical taxonomy based upon the composition of lipids is widely applied to investigate microbial communities and fatty acids have recently been employed to connect soil microbial and faunal food webs as well as to elucidate functional groups at higher trophic levels. The additional use of compound-specific isotopic analysis of ¹³C/¹²C ratios in fatty acids allows assessing specific trophic links and belowground carbon fluxes. In this review systematic patterns and processes underlying variations in the composition of fatty acids and their ¹³C/¹²C ratio are described. The emphasis is on biomarker fatty acids, their incorporation and modification, effects of pool size, and analytical methods. Further development of the application of fatty acid profiling to soil ecology should include both advances in experimental research and growth of theory. Accordingly, areas in which future experimentation can lead to progress in soil food web analysis are identified. Overall, combining fatty acid biomarker and their isotopic ratios will allow detailed insight into belowground trophic interactions.     

Fatty acid patterns as biomarker for trophic interactions: Changes after dietary switch and starvation

Fatty acid (FA) analysis is becoming increasingly important for investigating trophic interactions in soil food webs. FA profiles of neutral lipids are affected by diet, and the occurrence and amount of certain FAs can reflect feeding strategies. However, to draw conclusions on feeding strategies in the field it is necessary to know physiological parameters of fatty acid metabolism such as the detection time and storage period of FAs. In this study we investigated the chronological change of FA biomarkers in the Collembola Heteromurus nitidus when switched between different food sources: leaves (Tilia europaea), a fungus (Chaetomium globosum) and two bacteria (Stenotrophomonas maltophilia, Bacillus amyloliquefaciens). Additionally, we followed the change of bacterial FA biomarkers during starvation. After 14 days of food deprivation bacterial FAs were still detectable in a sufficient amount to use them as dietary markers. Switching diet experiments demonstrated that FAs typical for a specific diet are already present after one day and are still detectable after 14 days of feeding on a different food source, suggesting that FA analysis can integrate the food choice of Collembola over a longer period of time, in contrast to snapshot methods such as gut content analysis.     

Relationships among fine roots, fungal hyphae and soil microarthropods among different soil microhabitats in a temperate coniferous forest of Chamaecyparis obtusa

The relationships between roots and soil communities are not well understood. We used the ingrowth-core method with L-, FH-, and M-layer substrates to investigate the relationships among soil organic carbon, fine root biomass, hyphal length and the numbers of soil microarthropods. The study was carried out in a temperate forest of the arbuscular mycorrhizal conifer, Chamaecyparis obtusa. The relationships among fine roots, fungi and soil microarthropods were different among soil substrates and faunal taxa. Soil carbon contents, fine root biomass, hyphal length and soil-microarthropod numbers were the highest in the FH-substrate, and the lowest in the M-substrate. For each substrate, the total numbers of soil microarthropods did not positively correlated with soil organic carbon. A positive correlation between fine root biomass and the soil microarthropod numbers was significant only in the M-substrate, but not in the L- and FH-substrates. In M-substrates, strong positive correlations were found between fine root biomass or hyphal length and Mesostigmata or Oribatida numbers, but Collembola numbers were not corelated. Further studies of the regulation mechanism of soil food web structures should note that the soil microarthropods have different responses to C sources according to soil conditions and trophic interactions.     

Effects of food quality, starvation and life stage on stable isotope fractionation in Collembola

Naturally occurring stable isotopes of carbon and nitrogen are powerful tools to investigate food webs, where the ratio of ¹⁵N/¹⁴N is used to assign trophic levels and of ¹³C/¹²C to determine the food source. A shift in δ¹⁵N value of 3‰ is generally suggested as mean difference between two trophic levels, whereas the carbon isotope composition of a consumer is assumed to reflect the signal of its diet. This study investigates the effects of food quality, starvation and life stage on the stable isotope fractionation in fungal feeding Collembola. The fractionation of nitrogen was strongly affected by food quality, i.e. the C/N ratio of the fungal diet. Collembola showed enrichment in the heavier isotope with increasing N concentration of the food source. Δ¹⁵N varied between 2.4‰, which assigns a shift in one trophic level, and 6.3‰, suggesting a shift in two trophic levels. Starvation up to 4 weeks resulted in an increase in the total δ¹⁵N value from 2.8‰ to 4.0‰. Different life stages significantly affected the isotope discrimination by Collembola with juveniles showing a stronger enrichment (Δ¹⁵N=4.9‰) compared to adults (Δ¹⁵N=3.5‰). Δ¹³C varied between −2.1‰ and −3.3‰ depending on the food quality, mainly due to compensational feeding on low quality diet. During starvation δ¹³C value decreased by 1.1‰, whereas the life stage of Collembola had no significant effect on isotopic ratios. The results indicate that the food resource and the physiological status of the consumer have important impact on stable isotope discrimination. They may cause differences in fractionation rate comparable to trophic level shifts, a fact to consider when analysing food web structure.     

Fungal toxins affect the fitness and stable isotope fractionation of Collembola

We investigated the effect of the fungal toxin sterigmatocystin on the fitness and stable isotope fractionation of two Collembola species (Folsomia candida and Heteromurus nitidus) feeding on mixed vs. single diets. Four knock out mutants of Aspergillus nidulans with the sterigmatocystin production blocked at different steps along the biosynthetic pathway were combined in mixed diets with either the high quality fungus Cladosporium cladosporioides or the low quality fungus A. nidulans (wildtype). Using fungi labeled with stable isotopes (¹³C and ¹⁵N) we evaluated the incorporation of carbon and nitrogen from individual fungi. We hypothesised that (i) Collembola fitness decreases with the putative toxicity of the fungi (ii) Collembola benefit from ingestion of mixed diets due to toxin dilution and (iii) fractionation of ¹³C and ¹⁵N is more pronounced in more toxic diets. Mixed diets did not uniformly improve fitness. Toxin dilution, however, played an important role in Collembola fitness. The fractionation of ¹³C and ¹⁵N varied with sterigmatocystin mutant strains, and Collembola species often differed from the expected enrichment per trophic level. The results show that fungal toxin production may affect stable isotope fractionation, presumably by altering consumer excretion rates necessary for detoxification.     

Feeding guilds in Collembola based on nitrogen stable isotope ratios

In soil a high number of species co-exist without extensive niche differentiation, which was assigned as ‘the enigma of soil animal species diversity’. In particular, the detritivores are regarded as food generalists. We have investigated nitrogen stable isotope ratios (¹⁵N/¹⁴N) of a major decomposer group, the Collembola, to evaluate trophic relationship and determine feeding guilds. Additionally, the δ¹⁵N values of potential food sources such as mosses, lichens and other plant derived material (bark, nuts, leaves) were analysed. The natural variation in nitrogen isotopes was assessed in 20 Collembola taxa from three deciduous forest stands. The δ¹⁵N signature formed a continuum from phycophages/herbivores to primary and secondary decomposers, reflecting a gradual shift from more detrital to more microbial diets. The δ¹⁵N gradient spanned over 9 δ units, which implies a wide range in food sources used. Assuming a shift in ¹⁵N of about 3 ‰ per trophic level, the results indicate a range of three trophic levels. These variations in ¹⁵N/¹⁴N ratios suggest that trophic niches of Collembola species differ and this likely contributes to Collembola species diversity.     

Fatty acid composition and change in Collembola fed differing diets: identification of trophic biomarkers

To assess the potential of fatty acid (FA) compositions to act as biomarkers in the soil food web, two species of Collembola, Folsomia candida and Proisotoma minuta, were switched to four possible diets: Cladosporium cladosporioides (a common soil fungus), Panagrellus redivivus (a bacteria feeding nematode), Zea mays (maize) and Alnus glutinosa (alder). The change in FA content of the Collembola was observed over the following 39 days. The four diets produced significant shifts in the FA compositions of the Collembola, with P. redivivus causing the most extreme changes; Collembola fed P. redivivus gained complex FA compositions similar to those of the nematode diet. Changes in the relative abundances of some FAs were found to follow negative exponential curves, as the components either accumulated in, or were removed from, the FA pool in the Collembola; abundance half-lives varied between 0.5 and 22.4 days, indicating that Collembolan FA compositions changed readily with the input of new exogenous components. The results demonstrate that Collembolan FA compositions are influenced by diet, and that the abundances of FAs such as i15:0, i17:0 and 18:1(n-7) may be used as biomarkers of nematode consumption by Collembola. In contrast, the C₂₀ polyunsaturated FAs cannot be used as biomarkers for nematode predation as Collembola possess the ability to biosynthesise high abundances of these compounds when not provided by the diet.     

Microbial phospholipid biomarkers and stable isotope methods help reveal soil functions

This review targets microbial phospholipid biomarkers, their isotope analysis and their ability to reveal soil functions. The amount and composition of phospholipid fatty acids (PLFAs) measured in environmental samples strongly depend on the methodology. To achieve comparable results the extraction, separation and methylation method must be kept constant. PLFAs patterns are sensitive to microbial community shifts even though the taxonomic resolution of PLFAs is low. The possibility to easily link lipid biomarkers with stable isotope techniques is identified as a major advantage when addressing soil functions. Measurement of PLFA isotopic ratios is sensitive and enables detecting isotopic fractionation. The difference between the carbon isotopic ratio of single PLFAs and their substrate (Δ¹³C) can vary between −6 and +11‰. This difference derives from the fractionation during biosynthesis and from substrate inhomogeneity. Consequently, natural abundance studies are restricted to quantifying substrate uptake of the total microbial biomass. In contrast, artificial labelling enables quantifying carbon uptake into single PLFAs, but labelling success depends on homogeneous and undisturbed label application. Current developments in microbial ecology (e.g. ¹³C and ¹⁵N proteomics) and isotope techniques (online monitoring of CO₂ isotope ratios) will likely improve soil functional interpretations in the future. ¹³C PLFA analysis will continue to contribute because it is affordable, sensitive and allows frequent sampling combined with the use of small amounts of ¹³C label.     

Trophic shift of stable isotopes and fatty acids in Collembola on bacterial diets

Fatty acid (FA) analysis is a promising tool to study trophic relationships in soil food webs. We determined FA biomarkers to trace bacterial food sources (Bacillus megaterium, Pseudomonas putida, Enterobacter aerogenes) of Collembola (Heteromurus nitidus, Protaphorura fimata, Folsomia candida). In addition, δ¹⁵N, δ¹³C, C/N ratio, body weight and NLFA/PLFA ratio (neutral lipid/phospholipid fatty acids) of Collembola were assessed. These measures indicated that P. putida ranked first, B. megaterium second and E. aerogenes third in food quality. FAs specific for bacteria were found in the NLFAs of the Collembola reflecting the respective bacterial diet. Biomarker FAs for gram-positive bacteria were methyl branched i14:0, i15:0, a15:0 and i17:0. Consumption of gram-negative bacteria was reflected by the cyclic form cy17:0 (E. aerogenes, P. putida) and by 16:1ω5 (P. putida).     

Fate of fatty acids derived from biogas residues in arable soil

Biogas residues are rich in microbial biomass and contribute to organic matter formation when applied to soils. Here we present a detailed analysis of the fatty acids derived from ¹³C-labelled biogas residues applied to arable soil and incubated for 378 days. We applied a differential approach using phospholipid fatty acids and total fatty acids to evaluate the carbon dynamics in living biomass and non-living soil organic matter. Biogas residue addition increased the microbial biomass in soil. The sum of ¹³C-labelled phospholipid fatty acids decreased to ∼60% during incubation whereas the decrease of t-FA was higher (to 33%). Compound-specific fatty acid analysis showed fatty acid specific incorporation or loss of ¹³C, indicating hints for the carbon flow within the microbial food web. Overall, microbial biomass in biogas residues may be a significant contributor to soil organic matter formation.     

Low importance for a fungal based food web in arable soils under mineral and organic fertilization indicated by Collembola grazers

We investigated the Collembola community at an arable field where mineral and organic fertilizers have been applied at low and high rates for 27 years. As food resources for Collembola, the soil microbial community was analyzed using phospholipid fatty acids (PLFAs). A special focus was put on AM fungi, which were estimated by the marker 16:1ω5 in PLFA (viable hyphae) and neutral lipid fatty acid (NLFA – storage fat in spores) fractions. Additionally, whole cellular lipids in crop plant tissues and manure were assessed. Greater Collembola species richness occurred in plots where mineral fertilizer was added. In contrast, soil microbial biomass including AM fungal hyphae increased with addition of organic fertilizer, while the amount of AM fungal spores and biomass of saprotrophic fungi were not affected by fertilizer type. The lipid pattern in wheat roots was altered by fertilizer type, application rate and their interaction, indicating different rhizosphere communities. In sum, the availability and composition of food resources for Collembola changed considerably due to farm management practice. The major diet of three dominant Collembola species, Isotoma viridis, Willemia anophthalma and Polyacanthella schäffer was determined by lipid profiling. Multivariate analysis demonstrated species specific lipid patterns, suggesting greater importance of species than management practice on the diet choice. Nevertheless, feeding strategy was affected by fertilizer type and availability of resources, as trophic biomarker fatty acids indicated feeding on wheat roots (and to some extent saprotrophic fungi) with mineral and a shift to soil organic matter (litter, detritus) with organic fertilization. Although AM fungi dominated the soil fungal community, the AMF marker 16:1ω5 was not detected in Collembola lipids, indicating that these were not consumed. The very low amount of saprotrophic fungi in the soil and the fact that Collembola as major fungal grazers did not feed on AM fungi indicates that the fungal energy channel in the investigated arable field is of little importance to the faunal food web.     

The diet and food preferences of Onychiurus procampatus (Collembola) from upland grassland soils

Specimens of Onychiurus procampatus (Collembola) observed grazing on fungal mycelia were collected from the surface soil of three differently manged upland grasslands. A general trend of an increasing proportion of Collembola with a full gut was found along a gradient of reduced sheep management intensity, which was correlated with increased fungal biomass. In the laboratory, this collembolan showed a consistent order of preference for the mycelium of seven common fungal species isolated from the field sites.     

Compartmentalization of the soil animal food web as indicated by dual analysis of stable isotope ratios (N/N and C/C)

The soil animal food web has become a focus of recent ecological research but trophic relationships still remain enigmatic for many taxa. Analysis of stable isotope ratios of N and C provides a powerful tool for disentangling food web structure. In this study, animals, roots, soil and litter material from a temperate deciduous forest were analysed. The combined measurement of δ¹⁵N and δ¹³C provided insights into the compartmentalization of the soil animal food web. Leaf litter feeders were separated from animals relying mainly on recent belowground carbon resources and from animals feeding on older carbon. The trophic pathway of leaf litter-feeding species appears to be a dead end, presumably because leaf litter feeders (mainly diplopods and oribatid mites) are unavailable to predators due to large size and/or strong sclerotization. Endogeic earthworms that rely on older carbon also appear to exist in predator-free space. The data suggest that the largest trophic compartment constitutes of ectomycorrhizal feeders and their predators. Additionally, there is a smaller trophic compartment consisting of predators likely feeding on enchytraeids and potentially nematodes.     

Soil fauna and soil function in the fabric of the food web

Over the last four decades, spanning David Coleman's career, and in no small measure thanks to him, soil ecologists have made tremendous progress in describing and understanding the overwhelming complexity of biological, biophysical and biochemical interactions in soil. These interactions shape the soil as a habitat for the soil food web and the vegetation and, thereby, regulate the two main life-supporting processes on Planet Earth: production and decomposition. Changes in decomposition and production processes are governed by (human-induced) changes in vegetation composition/cover, the amounts and quality of organic residues and (in)organic fertilizers entering the soil. Such modifications alter the physical environment and the soil biota. Hence, decomposition and production processes cannot be understood and/or manipulated without explicitly addressing the composition and activity of the soil food web. Using a conceptual model, we argue that quantitative understanding of biophysical interactions, in particular those between soil fauna and soil structure, are paramount to understanding biological and biochemical processes in soil and the availability of water and nutrients to plants. The need to increase the efficiency of crop production worldwide, to reverse soil degradation and to increase soil resilience will set the agenda for soil ecologists in the near future.     

基于C、N同位素技术的河流食物网基础碳源研究进展

基础碳源是河流生态系统最重要的特征之一,它通过生物间能量传递,影响着河流生态系统生物多样性、群落结构及其稳定性。本文基于稳定性同位素技术综述了河流基础碳源类型、食物网能量贡献率估算模型、食物网基础碳源理论模型(河流生产力模型RPM、河流连续模型RCC和河流脉冲模型FPC)及其交互作用以及它们在实际应用上的利弊,介绍了能较好平衡各种模型利弊、适应于多样化水文特征的河流生态系统综合体(RES)新假说,并展望了稳定性同位素技术与非致命取样方法相结合建立长期河流同位素数据库的重要意义,旨在推动对河流生态系统中不同生物之间营养关系的理解,为河流生态系统的修复与保护提供理论依据。