New applications of hydroacoustic methods for monitoring shallow water aquatic ecosystems: the case of mussel culture grounds

The development of acoustics tools and methods for monitoring anthropized ecosystems represents a new field for the application of acoustics. Monitoring such an environment was not possible with single vertical echo sounders, due to the fact that the artificial structures and the natural targets were not distinguishable. Monitoring data were collected along the French Mediterranean coastline, during five short surveys of mussel culture longline areas. Both the Reson Seabat 6012 multibeam sonar (455 kHz) and the Simrad SR 240 omnidirectional sonar (23.75 kHz) were used for target detection. The former tools allow accurate allocation of the different types of echoes to artefacts, fish schools and scattered fish. The school characteristics collected included morphological, geographical (GPS, school location), and behavioural (connections with the longlines). An acoustic survey undertaken with the same hardware near the study area allowed the comparison of fish schools and the TS distribution of individual fish in the open sea and in the mussel area. These data permitted us to evaluate the ecological impact of a mussel culture on the ecosystem, in a context of predation behaviour of fish on these longlines. Finally, the acoustic data revealed the configuration of each concession and the level of charge of each line. We discuss the applicability of this technology for in situ real time monitoring for joint management of such ecosystems. The information can allow littoral cooperative management or incorporating it into an ecosystem approach.     

基于成像声呐的鱼类三维空间分布

针对海洋牧场中鱼群的三维空间分布问题,本研究提出一种利用成像声呐进行位置计算的方法。将成像声呐固定在船舷外侧的水下,并保证波束发射方向和声呐移动方向一致,通过走航的方式采集水下鱼群信息。首先对采集的原始数据进行图像处理,包括图像构建、背景去除、目标提取等,然后利用基于交互式多模型联合概率数据关联算法对水下目标进行关联处理,得到同一个目标在声呐水平视场中不同帧图像中的对应关系,在此基础上根据连续两帧图像中目标位置关系计算目标的空间坐标,最后结合关联算法获得多目标在三维空间中的运动轨迹以及深度分布情况。研究表明,本方法可以有效获取鱼群在水下的三维运动轨迹及其分布情况,这将为鱼类行为分析以及海洋牧场的资源评估提供技术支持。     

Using the Judas technique to locate and remove wintertime aggregations of invasive common carp

Abstract Radio‐ and acoustic telemetry in three Midwestern lakes demonstrated that common carp, Cyprinus carpio L., aggregate as water temperatures descend below 10 °C. Particularly dense aggregations formed at temperatures <5 °C, and once located, these aggregations could be removed with an efficiency of up to 94% using seine nets. Carp aggregated just below the surface of the ice (approximately 1.5 m) and rarely descended to warmer waters, which extended down to 10 m. Although aggregations consistently formed close to shore, their locations could not be explained by temperature or dissolved oxygen. The aggregations also moved frequently, making radio‐tagged fish invaluable to locate them. Coldwater aggregations of carp may reflect a type of shoaling behaviour and can be exploited with the aid of radio‐tagged (Judas) fish to control this invasive fish effectively. Similar approaches might be developed for other gregarious invasive fishes.     

Evaluation of a stimulus-response method for distinguishing out-migrant salmonids from drifting debris for sonar counts in the Trinity River,California

A method for discriminating fish from debris in sonar counts of out-migrant salmonids was tested in the Trinity River, California. The method used induced fish movements to distinguish fish from drifting debris. Electricity and light served as stimuli and video and split-beam sonar were used to measure movements of fish (mainly juvenile chinook salmon) and debris (mainly tree leaves). Differences in fish and debris behavior were clearly observable with underwater video. Many fish darted or slowed and most fish dove, whereas debris drifted passively. Fish responded to the electric field inconsistently, and an apparent positive phototaxis was the most consistent response to stimuli. Lack of matched sonar and video observations of individual targets prevented direct testing of sonar’s ability to differentiate fish and debris in the Trinity River. However, analysis of sonar data from a similar situation in the Seton River, British Columbia, indicate that fish responses measured in the Trinity River by video were within the resolution of split-beam sonar. Split-beam position measurement error averaged ≤ 0.06 m within 5° of the acoustic axis, compared to a mean diving reaction of 0.11 m by salmonids observed with video. Proper transducer deployment, improved sonar analysis methods, and perfection of stimuli to elicit obvious and consistent fish responses are key to the success of this technique. With suitable development and validation, the stimulus-response method could become a useful tool for apportioning sonar counts among fish and debris.     

An evaluation of a steerable sidescan sonar for surveys of near-surface fish

A towed 330 kHz sector scanning sonar was evaluated for surveys of near-surface migratory salmonids (Oncorhynchus sp.) and other fish in the Strait of Georgia near the mouth of the Fraser River near Vancouver, BC (Canada). Detection of large near-surface fish presents a serious challenge to conventional net trawls or echo-sounder surveys due to vessel avoidance behaviour by the fish. The sonar was towed beside a research vessel on a custom-built towfish at a nominal depth of 18 m. The optimum configuration was determined to be with the sonar scanning a 30° vertical sector oriented perpendicular to the tow direction, at a ping rate of 5 Hz and a sector scan period of 5 s. Fish were detected up to a range of 100 m, limited by systemic noise and backscattered reverberation from the sea surface. Some evidence of vessel-avoidance behaviour by the fish was observed. Near surface temperature and salinity gradients are shown to induce downwards refraction of the sonar beam, resulting in biases in apparent depth and target strength of the fish. A simple model of the sonar performance in this scanning mode, including beam-pattern effects, is used to generate curves of fish target detectability and beam-pattern induced bias as a function of range and fish target strength. After correction for refraction effects, beam-pattern bias, and detectability, the survey results show reasonable agreement with net trawl and riverine escapement data.     

Vertical behavior of juvenile yellowfin tuna Thunnus albacares in the southwestern part of Japan based on archival tagging

The behavior of juvenile yellowfin tuna Thunnus albacares in southwestern Japan was investigated using archival tag data from five fish (fork length 52.5–92 cm, days at liberty 26–280 days) released near the Nansei Islands (24–29°N, 122–130°E). Vertical behavior was classified into three patterns: “shallow” (≥50 % of daytime hours at depth of <50 m), “deep” (≥50 % of daytime hours at ≥100 m), and “intermediate” (other than “shallow” or “deep”). The pooled proportion of the number of days of each behavior was 29, 25 and 46 %, respectively. The proportion of “shallow” behavior increased with fish size. The proportion of time spent near the surface at nighttime increased in the colder season, when the thermal gradient was relatively small. Surface-oriented behavior (fish remained at a depth of <10 m for more than 10 min) occurred mainly during nighttime and between November and January. Dives exceeding 500 m were occasionally observed (0.02 day^?1), and one fish dived to 1230 m. The results of our study show that yellowfin tuna were typically distributed in the mixed layer or upper thermocline where the water temperature was close to the sea surface temperature and that the vertical behavior was variable.     

Observation and explanation of systematic split-beam angle measurement errors

Experiments conducted at the Qualark Creek acoustic site on the Fraser River have shown unexpected systematic errors in the split-beam angle measurement. A tethered dead salmon with a target strength of approximately –30 dB was used as a target at 3.7 m range. A signal-to-noise ratio of ∼12 dB was observed. This target strength and signal-to-noise ratio are typical in some rivers where migrating adult salmon are observed. The target's location was measured both from the frame used to position the target in the beam and from the acoustic data. Comparison of these two sets of measurements demonstrated a bias that increased with the target's distance off the beam axis. The acoustically measured target locations were closer to the beam axis than the actual locations. Each acoustic estimate represented the mean location obtained after 3 000 pings. Results from a simulation model that includes the effects of random noise on the split-beam angle measurement reproduce the systematic underestimate of these angles. This bias increases rapidly with increasing off-axis target location and decreasing signal-to-noise ratio. The bias has been observed for circular and elliptical beams and the model accurately predicts the magnitude and direction of the systematic part of the angle measurement error in both cases. Results for a circular transducer are used here to illustrate the situation. The presence of this bias can affect measurements of fish density and migration speed. At the low signal-to-noise ratios often obtained in riverine environments, those who use a split-beam system for observation or estimation of fish should be aware of this phenomenon.     

Staged spawning migration in Icelandic capelin (Mallotus villosus): effects of temperature,stock size and maturity

Capelin (Mallotus villosus) is the largest commercial fish stock in Icelandic waters and also an important forage fish. Every winter pre‐spawning capelin migrate 500–1000 km from their offshore (>200 m bottom depth) northern feeding areas (67–71°N) to inshore (<200 m bottom depth) southern spawning areas (63–65°N). The major migration route is east of Iceland. The route consists of both offshore and inshore phases. The migration begins offshore as capelin skirt the shelf edge north of 65°N, then abruptly veer inshore between latitudes 64° and 65°N. Hydro‐acoustic data from 1992–2007 demonstrated that the timing of the offshore phase migration varied by as much as 1 month, from 22 December to 21 January. A combination of larger spawning stock and colder feeding ground temperatures (August–December) resulted in earlier offshore migration. The timing of the inshore migration phase was not dependent on the offshore migration timing, and never began prior to the first week of February. Many cohorts arrived at latitudes 64–65°N in early January but staged offshore at latitudes 63.8–65.8°N until early February. The longest observed delay in the staging area was 5 weeks. Timing of the inshore migration was controlled by gonad maturity, with migration beginning when roe content attained 12–14%. Staging limited the time capelin spent on the continental shelf before spawning to 3 weeks. We suggest that offshore staging evolved to minimize temporal overlap with predatory gadoids, especially Atlantic cod (Gadus morhua).     

Horizontal movement and emigration of juvenile spotted halibut <Emphasis Type="Italic">Verasper variegatus</Emphasis> released in a shallow brackish lagoon: Matsukawa-ura,northeastern Japan,revealed by acoustic telemetry

To elucidate the post-release movement and emigration of juvenile spotted halibut Verasper variegatus, ten hatchery-reared age-0 individuals (10 months old, 17.0–19.7 cm total length) surgically implanted with acoustic transmitters were released near the center of Matsukawa-ura, a shallow brackish lagoon, on 25 November 2009 (water temperature 13.8 °C). They were monitored by ten acoustic receivers for 5 months. Of ten individuals, eight left the release site during December–March. Three of these emigrated to the outer ocean on 17 and 29 January and 30 March 2010, respectively. Juveniles probably started wintering migration in December and January when water temperatures decreased considerably in the lagoon (mean 9.5 and 6.0 °C, respectively). They stopped their migration in the coldest month, February (mean 5.7 °C), and restarted it in March when water temperatures frequently exceeded a plausible threshold for movement (≥6 °C). Statistical analyses revealed that the fish started migration significantly more frequently at nighttime. The migration track of an individual recorded from 11 to 30 March showed gradual nocturnal movements and a slow migration speed (estimated maximum speed 2.2 m/min). Our results revealed that water temperature primarily governed the seasonal timing of nocturnal migratory movements of juvenile spotted halibut.     

Influence of diurnal behaviour rhythms and water-level fluctuations on the migratory activities of fish in a backwater of the River Danube:a hydroacoustic study

This paper reports the results from three fixed-location acoustic surveys carried out in August and September 1996 to analyse the influence of diurnal behaviour rhythms and water-level fluctuations on the migratory activities of fish in the mouth of the Regelsbrunn-arm east of Vienna, Austria. A BioSonics 105 dual-beam echosounder (420 kHz), with a circular transducer (6°/15°) beaming nearly horizontal across the arm was used, with acoustic ranges of between 20 and 30 m. All surveys were conducted during day and night. The fish density was highest during the first observation period with low water level, lowest during the second sampling period with increasing water level, and intermediate during the third period with decreasing water level. The fish density was always higher during night than during day. Diurnal behaviour rhythms influenced the fish density as well as the size-frequency distribution. Increasing or decreasing water-gauge superposed the influence of diurnal behaviour rhythms on the size-frequency distribution for immigrating fish of certain length classes. Fish within the length group 10–15 cm tended to migrate upstream during decreasing water-gauge. Fish above 400 mm total length tended to move upstream during increasing water-gauge.     

Vertical behavior of bigeye tuna (Thunnus obesus) in the northwestern Pacific Ocean based on archival tag data

The behavior of bigeye tuna (Thunnus obesus) in the northwestern Pacific Ocean was investigated using archival tag data for 28 fish [49–72 cm fork length (FL) at release, 3–503 days] released in Japanese waters around the Nansei Islands (24–29°N, 122–132°E) and east of central Honshu (Offshore central Honshu, 32–36°N, 142–148°E). Vertical behavior was classified into three types based on past studies: ‘characteristic’ (non‐associative), ‘associative’ (associated with floating objects) and ‘other’ (behavior not fitting into these two categories). The proportion of fish showing associative behavior decreased and that of characteristic behavior increased as fish grew, and this shift was pronounced at 60–70 cm FL. The fish usually stayed above the 20°C isotherm during the daytime and nighttime when showing associative behavior and below the 20°C isotherm during daytime for characteristic behavior. A higher proportion of characteristic behavior was seen between December and April around the Nansei Islands, and between September and December for offshore central Honshu. Seasonal changes in vertical position were also observed in conjunction with changes in water temperature. In this study, ‘other’ behavior was further classified into five types, of which ‘afternoon dive’ behavior, characterized by deep dives between around noon and evening, was the most frequent. The present study indicated that in the northwestern Pacific Ocean, the vertical behavior of bigeye tuna changes with size, as well as between seasons and regions.     

Density and in situ target strength of herring and sprat: a comparison between two methods of analyzing single-beam sonar data

We analyzed sonar data obtained with a 70-kHz single-beam echosounder with two methods for removing the beam pattern effect: one based on the Craig and Forbes logarithm; the other based on a z-transformation and deconvolution operation. The sonar data were collected from 4 July to 23 October 1985, in a coastal area of the northern Baltic proper where herring (Clupea harengus L.) and sprat (Sprattus sprattus L.) dominated the pelagic fish populations. The two methods gave similar total fish densities, but the proportion of different size classes sometimes differed by up to 30 percentage units.The acoustic data are compared with size distributions and catch per unit effort in simultaneously collected vertical gill-net samples. Size distributions in nets and acoustics were fairly similar, but the relationship between catch per unit effort in gill nets and acoustic density estimates was poor. Target strength to fish-length regressions from the two acoustic methods were similar even though individual estimates differed by up to 4 dB on some sampling occasions. When the slope of the regression is set to 20 we obtained the equation TS=20 log L-69.9 with both methods (TS is target strength in dB and L is fish length in cm).     

Evaluating habitat associations of a fish assemblage at multiple spatial scales in a minimally disturbed stream using low‐cost remote sensing

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Using single-beam side-lobe observations of fish echoes for fish target strength and abundance estimation in shallow water

Acoustic surveys for determining fish abundance in shallow water present many challenges. One constraint to down-looking (or vertical) surveys is that the sampling volume is limited due to the short range and typically narrow beams of acoustic transducers. By utilizing more of the acoustic beam, into the side-lobes for example, the sampling volume may be increased. Although the echo energy contribution from the side-lobes is usually small, these echoes may influence target strength estimation and echo counting, and by extension affect abundance estimation either directly or indirectly. With the advent of wide dynamic range echosounders, it is possible to assess both small and large acoustic-size targets. In this case, it is possible to collect signals from large targets in the beam side-lobes, and therefore an algorithm to use side-lobe data is proposed. The smoothed Expectation Maximization method (EMS) is used to estimate densities and target strength of fish from only main-lobe and main-lobe with side-lobe observations in simulation, and suggestions are made for real data from surveys.     

Predator and prey events at the entrance of a surface-oriented fish collector at North Fork Dam,Oregon

Quantifiable estimates of predator–prey interactions and relationships in aquatic habitats are difficult to obtain and rare, especially when individuals cannot be readily observed. To overcome this observational impediment, imaging sonar was used to assess the cooccurrence of predator-size fish and juvenile salmonids, Oncorhynchus spp., at the entrance to a floating surface collector (FSC) in the forebay of North Fork Dam on the Clackamas River, Oregon (USA). Imaging sonar can be used to transform active sound waves into visual data, making it possible to obtain continuous underwater observations on the presence and interspecific interactions between predator-size fish and prey (juvenile salmonids). Hourly counts of smolt-size fish tracks, diel phase, water clarity and river discharge were used as covariates within a zero-inflated Poisson model to determine how these factors may influence the number of predators in front of the FSC. Both the number of smolt-size fish tracks and diel phase had the strongest effects on the number of predator-size fish tracks, with more predator-size fish tracks observed during the daytime, and as the number of smolt-size fish tracks increased. Additionally, the presence of predator-size fish may affect the abundance and direction of travel of juvenile salmonids, as fewer smolt-size fish were observed when predators were present, and a greater proportion of smolt-size fish were observed travelling away from the FSC when predator-size fish were present. This study provides estimates of predator and prey fish abundance in the vicinity of surface collection systems at moderate-sized hydropower projects and could help resource managers better understand mechanisms that can influence the survival and passage behaviour of juvenile salmonids using surface collection structures at dams.