Problems and Challenges of Invasive Ornamental Plants and Molecular Tools to Control Their Spread

Abstract

Invasive plants, one of the most devastating ecological problems in the 21st century, cause an estimated $35 billion loss per year to the economy in the United States alone. More than 50% of all invasive plant species and 85% of invasive woody plant species were introduced originally for ornamental and landscape use. Because many non-native ornamentals are commercially important and widely utilized for various purposes, completely banning their use and prohibiting their import are unpractical solutions. On the other hand, currently used methods to control the spread of non-native plants are ineffective, expensive, or environmentally problematic. Recent advances in plant molecular biology and plant genetic transformation may enable us to create sterile cultivars of these non-native ornamental crops of high commercial value. The use of sterile cultivars should reduce or eliminate the undesirable spread of some non-native invasive plants into natural areas.     

Photoperiodic Regulationof Apical Growth Cessation in Northern Tree Species

Summary

Tree species adapted to the climatic conditions of the northern boreal and subarctic vegetation zones have a capacity to develop a very high level of frost hardiness, even to survive the temperature of liquid nitrogen in midwinter. Proper timing of hardening, as well as of dehardening, is crucial for winter survival of these species. In northern tree species, cessation of apical elongation growth and bud set is a prerequisite for developmental and metabolic processes leading to hardening, and this chain of events is induced by photoperiod. The northern tree species are closely adapted to the local light climate and display photoperiodic ecotypes. The critical photoperiod is under genetic control and increases with increasing latitude of origin of the eco-type. The photoperiod is probably perceived by the phytochrome system, but the role of other pigment systems, like cryptochrome, has not been studied in woody plants. Phytochrome genes have been cloned from both conifers and deciduous species, but so far we do not have any information about possible differences between photoperiodic ecotypes at the phytochrome level. Northern and southern ecotypes have different responses to red:far red ratios, which could indicate differences in composition of their phytochrome systems, for example, the proportions of phytochrome A and B. Both phytochrome A and phytochrome B can be involved in photoperiodic responses. Experiments with transgenic hybrid aspen suggest that responses to photoperiod could be affected by the amount of phytochrome A present in plants. In deciduous species, the plant hormone gibberellin A₁ (GA1) can completely substitute for a long photoperiod, and short day induced cessation of growth is preceded by a significant reduction of GA1 levels, particularly in the elongation zone. Photoperiodic control of GA metabolism is supported by several studies, but very little is known about the interaction between phytochrome and GA metabolism and/or responsiveness to GA1. Although our knowledge is still very fragmentary, available results suggest that cessation of growth and initiation of hardening in trees can be controlled both through the phytochrome and the GA mediated systems. Research with tree species is a tedious and slow process, but with the emerging new methods and approaches, we may expect exciting new results in the near future.     

Ethylene

Abstract

Ethylene is a simple gaseous hormone that is involved in many aspects of plant growth and development. Two physiological responses that are commonly controlled by ethylene, fruit ripening and flower senescence, have been given the most significant attention in terms of crop improvement using the tools of modern plant molecular biology and biotechnology. Fortunately, the wealth of research on ethylene biosynthesis and signaling pathway has been providing tools for the genetic control of ethylene effects. Today, manipulation of ethylene biosynthesis and signaling is one of the most promising approaches to improve crops through genetic engineering. In this review we will discuss current status and future directions of transgenic techniques to control ethylene effects with a primary focus on flower senescence.     

Transgenic Approaches to Disease Resistance in Ornamental Crops

Abstract

Viral, bacterial, and fungal diseases of ornamental plants cause major losses in productivity and quality. Chemical methods are available for control of fungal diseases, and to a lesser extent for bacterial diseases, but there are no economically effective chemical controls for viral diseases except to control vector species. Host plant resistance is an effective means of controlling plant diseases, and minimizing the necessity for the application of pesticides; however, there are many ornamentals in which no natural disease resistance is available. It is possible to introduce resistance derived from other species, or even from the pathogen itself, by genetic engineering. This allows the introduction of specific, or in some instances broad spectrum, disease resistance into plant genotypes that have been selected for desirable horticultural characters; in contrast, introduction of natural resistance by traditional breeding may take many cycles of breeding to combine disease resistance with desirable ornamental quality. This article briefly reviews existing work on transformation systems for ornamentals, and discusses the various approaches to introducing resistance to viral, bacterial, and fungal diseases, and to nematode infestations. These include pathogen-related proteins, R genes, and general pathogen resistance; anti-microbial peptides; expression of anti-pathogen antibodies; viral sequences; ribozymes; antiviral peptides; ribonucleases; and ribosome-inactivating proteins. Examples are given of application of these approaches to disease resistance in other types of crop and model plant systems, and actual or potential application to disease resistance in ornamentals. Future prospects for obtaining plants with multiple pest and disease resistances are discussed.     

The Cornucopia of Small RNAs in Plant Genomes

Regulatory small RNAs (approximately 20 to 24 nt in length) are produced through pathways that involve several key evolutionarily conserved protein families; the variants of these proteins found in plants are encoded by multigene families and are known as Dicer-like, Argonaute, and RNA-dependent RNA polymerase proteins. Small RNAs include the well-known classes of microRNAs (miRNAs, ~21 nt) and the small-interfering RNAs (siRNAs, ~24 nt). Both of these types of molecules are found across a broad set of eukaryotic species, although the siRNAs are a much larger and more diverse class in plants due to the abundance of heterochromatic siRNAs. Well-studied species such as Arabidopsis have provided a foundation for understanding in rice and other species how small RNAs function as key regulators of gene expression. In this paper, we review the current understanding of plant small RNA pathways, including the biogenesis and function of miRNAs, siRNAs, trans-acting siRNAs, and heterochromatic siRNAs. We also examine the evolutionary relationship among plant species of both their miRNAs and the key enzymatic components of the small RNA pathways. Many of the most recent advances in describing small RNAs have resulted from advances in sequencing technologies used for identifying and measuring small RNAs, and these technologies are discussed. Combined with the plethora of genetic tools available to researchers, we expect that the continued elucidation of the identity and functions of plant small RNAs will be both exciting and rewarding.     

Auxin,Cytokinin and Ab sei sic Acid

Abstract

Auxin, cytokinin, and abscisic acid (ABA) are important plant hormones that regulate many growth and developmental processes. In recent years, a number of genes involved in the metabolic and signaling pathways for auxin, cytokinin and ABA have been cloned and characterized. With organ-and tissue-specific or conditionally active gene promoters, it has become possible to manipulate concentrations of plant hormones in planta to create commercially desirable traits. Seedless fruit production and the extension of shelf life of green produce and ornamental plants are two successful examples of manipulating concentrations of these hormones in planta. In this review, we will focus our discussion on the effects of the over-or under-expression of genes involved in the biosynthetic and catabolic pathways of these hormones with an emphasis on their potential applications in ornamental crops.     

Grazing and fertilization influence plant species richness via direct and indirect pathways in an alpine meadow of the eastern Tibetan Plateau

Grazing and fertilization influence plant species richness through multiple pathways, but the exact pathways and their relative contributions are unclear. Here, we report on a 3‐year field experiment on an alpine meadow in which we manipulated grazing and fertilization simultaneously to assess their direct and indirect effects on plant species richness. Results indicated that both grazing and fertilization significantly influenced plant species richness via above‐ and belowground pathways. Specifically, the direct effect of grazing (?0·30, effect size) on species richness was negative, mainly due to selective feeding. This was comparable, in magnitude, to a positive indirect effect of grazing (0·36) on species richness, due to decreased aboveground biomass and increased belowground biomass. The direct effect of fertilization (?0·34) on species richness was negative, which was attributed to the changes of soil pH and available nitrogen; this effect was double the indirect effect (?0·16), which largely stemmed from the increased aboveground biomass rather than changes in belowground biomass. No significant interaction of grazing and fertilization on species richness was observed, but the effect of fertilization on species richness was masked by the effect of grazing in the combined treatment. It was concluded that moderate nitrogen addition (<51·0 kg N ha^?1 year^?1) could increase local pasture productivity while also sustaining species richness stability.     

Genetic Variations in Dry Matter Production,Nitrogen Uptake,and Nitrogen Use Efficiency in the AA Genome Oryza Species Grown under Different Nitrogen Conditions

Abstract

To clarify the genotypic variation of nitrogen (N) response in the AA genome Oryza species, we investigated dry matter production, N uptake, N and water use efficiencies (NUE and WUE), bleeding sap rate (BR), and root morphological traits at vegetative stage in 6 cultivars and 4 strains of 6 species (O. sativa, O. glaberrima, O. barthii, O. nivara, O. meridionalis, and O. rufipogon) grown under standard N (SN) and low N (LN) conditions. Some wild Oryza strains and O. glaberrima showed high dry matter production under both N conditions. In most plants, total dry weight decreased and root dry weight increased under the LN condition, resulting in decreased top-root ratio. In japonica cultivars of O. sativa, however, these traits were unaffected by the N condition. There were no significant differences in WUE with plant species or N conditions. In all plants, however, NUE was higher in the LN than SN condition, and was conspicuously high in most wild Oryza species and O. glaberrima. Some of them showed increased capacity of nitrate-N (NO₃-N) uptake under the LN condition. In cultivars and strains with a high NUE, root dry weight, root surface area, and BR were also higher under the LN condition. These results suggest that a high NUE is associated with the development of a root system, increased BR, and probably increased capacity of NO₃-N uptake. This study revealed the presence of superior wild Oryza strains for growth under LN that may be a promising genetic resource for low N-input agriculture.     

Flower Development and Photoperiodic Control of Flowering in Rice

Floral transition,which is referred to as a plant’s transition from vegetative stage to reproductive stage,is considered to be a critical developmental switch in higher plants,for a timely flowering is a major factor of reproductive success.Endogenous and environmental cues,such as photoperiod,light quality,plant hormones concentrations and temperature,provide information to the plants whether the environment is favorable for flowering.These cues promote,or prevent,flowering through a complex genetic network,mediated by a careful orchestration of temporal and spatial gene expression.One of such cues is photoperiod.Rice(Oryza sativa L.) serves as a powerful model species for the understanding of flowering in higher plants,including flower development and photoperiodic control of flowering.In this review,we overviewed and discussed the flower development and its model.We also overviewed the photoperiodic pathways in rice flowering control,and summarized the pathways at molecular level.     

小麦抗逆相关转录因子DREB密码子偏好性特征分析

DREB(dehydration responsive element binding)转录因子在植物抵抗干旱、高盐、低温等非生物逆境中发挥着重要作用。为探究普通小麦抗逆相关转录因子DREB密码子的偏好性特征,本研究运用CodonW、CHIPS和CUSP软件程序分析了小麦DREB基因的密码子使用特性,并与13种植物的DREB密码子偏性进行比较。结果表明,小麦DREB基因主要偏好以GC结尾的密码子;根据RSCU值,确定小麦DREB基因的高频密码子有14个;不同作物间DREB基因的密码子选用偏好性存在一定差异;基于DREB编码序列的聚类分析比基于密码子使用偏性聚类分析更能准确地反映物种间的亲缘关系;属于真核生物的酵母菌比属于原核生物的大肠杆菌更适宜作为DREB基因表达的异源受体。小麦DREB与模式植物基因组之间密码子使用偏性差异较小,拟南芥可能比烟草和番茄更适合作为该基因转基因研究的理想受体。小麦DREB密码子偏性分析为该基因的异源表达及分子遗传研究提供了一定的理论依据。     

Regulation of C/N Interaction in Model Plant Species

Summary

Carbon (C) and nitrogen (N) metabolisms are two major metabolic pathways which have been intensively studied in plants. Both N and C metabolisms are tightly linked in numerous plant biochemical pathways. Therefore the C to N ratio has to be carefully regulated to ensure proper functioning of the huge metabolic network. In order to maintain a viable C/N status under a large range of growth conditions plants have evolved complex mechanisms to regulate the delicate network of these two major assimilatory pathways. C and N metabolisms are both highly regulated. We will present the current knowledge on the regulation of N and C metabolisms by sugars and N metabolites. Players involved in these regulatory processes are just starting to be uncovered and possible signaling molecules involved in these regulations as well as known or potential candidate regulatory genes willbe discussed.     

Disease Tolerance in Helianthus petiolaris : A Genetic Resource for Sunflower Breeding

Abstract

Argentina is a major sunflower producer in the world, with crop acreage of 2?2.7 million ha in the last four years. Sunflower crop yield is often influenced by sanitary constraints, mainly fungal pathogens. Helianthus petiolaris is a wild species native to North America established in central Argentina displays a high tolerance to a number of fungal diseases and insects. Controlled crosses of this species with sunflower demonstrated that H. petiolaris constitutes a valuable genetic variability source for sunflower breeding to improve tolerance to rust (Puccinia helianthi), white rust (Albugo tragopogonis), verticillium wilt (Verticillium dahliae), powdery mildew (Erisiphe sp.) and the sunflower moth (Rachiplusia nu). This places H. petiolaris in an outstanding position as a genetic resource since different important traits could be transferred to the crop through interspecific hybridization.     

Determination of the genetic structure of remnant Morus boninensis Koidz. trees to establish a conservation program on the Bonin Islands, Japan

Background  

Morus boninensis, is an endemic plant of the Bonin (Ogasawara) Islands of Japan and is categorized as "critically endangered" in the Japanese red data book. However, little information is available about its ecological, evolutionary and genetic status, despite the urgent need for guidelines for the conservation of the species. Therefore, we adopted Moritz's MU concept, based on the species' current genetic structure, to define management units and to select mother tree candidates for seed orchards.     

Application of Molecular Markers in Breeding for Nitrogen Use Efficiency

Summary

Nitrogen use efficiency (NUE) is defined as dry matter yield produced per unit of N supplied and available in the soil. NUE is approximately 33% for cereal production worldwide. Increased cereal NUE must accompany increased yield needed to feed the growing world population. Consequently, continued efforts are needed to include plant selection under low N input which is not often considered a priority by plant breeders. Molecular markers have accelerated plant breeding in a number of areas including biotic (disease and insect) resistance and abiotic (drought, low nitrogen fertilization and frost) tolerance. Marker-based technology has already provided scientists with a powerful approach for identifying and mapping quantitative trait loci (QTL) and would lead to the development of a better understanding of genetic phenomena. Two main NUE studies have been discussed. The first study identified QTL for NUE in maize involved the grain yield and secondary morphological traits of interest, such as plant height, ear leaf area, ears per plant and kernels per ear. This was compared with second study of QTL for yield and its components with genes encoding cytolistic gult-amine synthestase and leaf N0₃ ^- content. These secondary traits were correlated with yield and demonstrated segregation with high heritability under low nitrogen conditions. Marker assisted selection (MAS) should be able to offer significant advantages in cases where phenotypic screening is particularly expensive or difficult, including breeding projects involving multiple genes, recessive genes, late expression of the trait of interest, seasonal considerations, or geographical considerations. In addition to reducing costs of conventional breeding, MAS also has the potential to generate time savings. Possibly, the greatest contribution of QTL mapping to plant breeding will be the basic understanding of the genetic architecture of quantitative traits, thereby relating specific genetic loci with the biological mechanisms associated with desirable phenotypes.     

Crop Breeding in the Twenty-First Century

SUMMARY

One can predict a future in which professional plant breeding, especially in the private sector, will be significantly scaled back, and advanced biotechnologies (e.g., genetic engineering) will be forbidden for use in plant breeding. Alternatively, one can predict a future in which commercialism will rule all sectors. But a more optimistic outlook predicts that the current tripartite division of responsibilities will prevail: Private Sector, Public Sector, and Participatory (i.e., farmer-breeder partnerships). The global plant breeding system is composed of separate organs, each essential for the survival of the whole but each with a different function. All parts work together for the good of the whole.     

Molecular Approaches to Improve Salt Resistance in Crops: Facts and Perspectives

SUMMARY

Because of the expansion of agriculture into marginal environments, enhancement of crop resistance to soil salinity is becoming a frequent objective for breeders. The tools offered by molecular biology to transfer a single or a few genes provide a major hope to reduce the negative impact of broad gene transfer that takes place in wide-cross hybridizations. Due to the presence of osmotic and toxic components in the growth response of plants to salt stress, any attempt to improve plant performance in saline environments should ensure the maintenance of an adequate flux of water into plant tissues, and also avoid the build up of ions into the cell compartments where they can exert toxic effects. Besides, reduction of injury effects due to salinity on plant tissues is a highly desirable objective. Transgenic plants overexpressing ion transporters able to exclude Na⁺ into vacuoles, the enzymes required for the biosynthesis of several osmocompatible, organic solutes, or the enzymes participating in detoxification pathways, have been obtained. Some of these transgenic plants display an enhanced growth relative to their wild type parents in saline environments, although the way in which this resistance is achieved remains essentially unknown. A fourth and promising way to engineer salt resistance in plants is the attempt to manipulate gene regulatory pathways. The extent to which these experiences, mainly with model plants, could be extrapolated to crop plants growing in the field is discussed. It is proposed that a combination of different molecular approaches could be helpful to achieve enhanced salt resistance in crop plants.     

Genetic Variability for Grain Yield and Its Components in an Early Tropical Yellow Maize Population Under Striga hermonthica Infestation

Abstract

A major problem that usually confronts the breeder is ensuring that there is sufficient genetic variability in a population for the trait being improved because this determines the breeding schemes to use for improvement and whether or not sufficient progress could be made. Three hundred full-sib families from cycle 3 of the early maturing yellow endosperm maize (Zea mays L.) population, TZE-Y Pop DT STR, were evaluated under artificial Striga hermonthica infestation at Mokwa and Abuja, Nigeria in 2003. The objectives of this study were to investigate the type of gene action involved in the inheritance of S. hermonthica resistance in TZE-Y Pop DT STR C3, determine the extent of genetic variability available in the population after three cycles of S1 recurrent selection, and the phenotypic and genetic correlation coefficients among the traits used for selecting for resistance to S. hermonthica. Estimates of dominance variances were larger than additive genetic variances for grain yield, plant height, ear height, number of ears at harvest, and Striga damage rating at 8 weeks after planting (WAP). Even though h2 estimates were generally low for most traits (< 0.40), moderate-to-large additive genetic variances, and wide ranges were obtained in TZE-Y Pop DT STR C3 for most traits, suggesting that there was adequate genetic variation for improving Striga resistance and grain yield in the population. Highly significant phenotypic correlation coefficients were obtained between grain yield and ears per plant, plant height, ear height, days to anthesis and silking, anthesissilking interval, and Striga damage score at 10 WAP. Recurrent selection methods that capitalize on both additive and dominance variances would be effective for improving the population for Striga resistance and grain yield.     

Accurate Evaluation of Photoperiodic Sensitivity and Genetic Diversity in Common Buckwheat under a Controlled Environment

Abstract

Photoperiodic sensitivity is one of the most important factors determining whether a crop can adapt to and be cultivated under a broad range of conditions. In common buckwheat (Fagopyrum esculentum Moench), flowering time (flowering of the first flower) is a complex trait influenced by photoperiod, light quality, and temperature, which change daily under natural conditions, and their interaction. Common buckwheat shows a large genetic variation because of the outcrossing reproductive strategy of this species. Thus, flowering time variation within a population reflects both environmental and genotypic variations, and accurate evaluation of photoperiodic sensitivity in common buckwheat requires cultivation under controlled environmental conditions. Here, we investigated photoperiodic sensitivity and its genetic diversity in two buckwheat cultivars, the autumn ecotype Miyazakizairai and the summer ecotype Botansoba, by controlling photoperiod during cultivation under the same temperature regime. Our results showed that (1) the summer ecotype consisted of early-flowering genotypes, including genotypes not found in the autumn ecotype; (2) the autumn ecotype consisted of various genotypes, including early-flowering genotypes and a large number of late-flowering genotypes not found in the summer ecotype; (3) the autumn ecotype showed larger genetic diversity than the summer ecotype in long-day treatments; and (4) genetic diversity first became evident in the 14.5-hr photoperiod in the autumn ecotype, and in the 15.0-hr photoperiod in the summer ecotype. These results support the hypothesis based on previous studies that common buckwheat summer ecotypes were derived from autumn ecotypes by adaptation to climate in northern Japan.     

Dual and Triple Intercropping: Potential Benefits for Annual Green Manure Production

Abstract

Greater species diversity in natural ecosystems increases plant biomass production and stability. Intercropping is an agricultural practice that aims to accrue the benefits of species diversity by growing two or more species simultaneously in the same space. Functional group diversity is considered important for enhancing the beneficial effects of species diversity, but most previous intercropping studies used combinations of only two functional groups. Thus, we used three green manure species from different functional groups: sorghum (Sorghum bicolor (L.) Moench.), a C4 grass; crotalaria (Crotalaria juncea L.), a legume; and sunflower (Helianthus annuus L.), a forb. We examined the effects of intercropping on biomass, nutrient uptake, and their stability using a proportional replacement series in a field experiment for three years with four trials. The aboveground biomass was higher with dual and triple-component intercrops compared with sole crops; however, there were no superior effects of triple-component intercropping over dual-component intercropping. There were also no clear advantages of intercropping in terms of the nutrient uptake amount and stability.     

Molecular Dissection of the Relationships among Tiller Number,Plant Height and Heading Date in Rice

Abstract

Appropriate plant height, tiller number and heading date are important traits for maximizing rice production. In order to understand the genetic basis of the relationships among these three plant traits, we mapped quantitative trait loci (QTLs) using a recombinant inbred population and detected two-locus interactions for plant height and tiller number at two growth stages and for heading date in two years. There were significant negative correlations between tiller number and plant height, and between tiller number at maturity and heading date. A significant positive correlation was observed between heading date and plant height at maturity. A total of 29 QTLs for the three traits were identified over the two years. Results show that QTLs and majority of two-locus interactions for plant height and tiller numbers at 35 days after transplanting were different from those at maturity, indicating that different genes and interactions control the traits at different developmental stages. A large proportion of QTLs and interactions could only be detected in one year, suggesting that QTLs and two-locus interactions for the traits were dependent on the environment. Results suggest that pleiotropy and/or close linkage of genomic regions and pleiotropy of common two-locus combinations may be the genetic basis for the close correlations among the three traits. A QTL with a large effect for heading date, which was located in RG424-RZ667 on chromosome 6, also showed large effects on tiller number and plant height at maturity.