Murray cod an apex predator in the Murray River, Australia

Abstract –  To determine if the Murray cod Maccullochella peelii peelii is an apex predator in the lowland rivers of the Murray-Darling Basin, its feeding ecology was compared with that of the sympatric top predator, golden perch Macquaria ambigua ambigua based on samples supplied by recreational anglers. Diet and prey size were reconstructed from alimentary tract contents of Murray cod ( N  = 39) and golden perch ( N  = 52), and their feeding morphology was assessed and included calculation of length–gape relationships and relative gut index. Both species fed principally on fish and decapods although Murray cod was the more piscivorous (frequency of occurrence 44% versus 6%, total number 50% versus 2%, total weight 90.4% versus 16.0%). Based on reconstructions of prey sizes, fishes up to 1 kg in weight were preyed on by Murray cod, distinguishing it from other top predatory fishes in the Murray-Darling Basin and supporting its classification as an apex predator.     

Complete nucleotide sequence and variation of mitochondrial DNA from 10 individuals of walleye pollock, Theragra chalcogramma

ABSTRACT:   The complete mitochondrial genome sequence of 10 walleye pollocks, Theragra chalcogramma , from the Japan Sea and Bering Sea was determined. The 16 568–16 571 bp genome contains the same 37 mitochondrial structural genes (two ribosomal RNA, 22 transfer RNA, and 13 protein-coding genes) as found in all other vertebrates analyzed, in an organization identical to that of other bony fish. The major non-coding region had several conserved sequence features. Nucleotide variations of ND1, ND5, and control region were high, and these regions appear to be good candidates for high-resolution markers in population studies.     

Evidence for genetic differentiation in the european conger eel Conger conger based on mitochondrial DNA analysis

ABSTRACT:   The European conger eel Conger conger is an important marine benthic fish in the North-East Atlantic and represents a valuable fishery resource. However, little is known about its reproductive biology. In an attempt to gain a better understanding of the conger eel population structure, mitochondrial DNA (mtDNA) sequences were examined. A region with 432 bp of the control region of the mtDNA was sequenced from 40 individuals from six different locations around the central and eastern North Atlantic Ocean. Thirty variable positions defined 28 distinct haplotypes. The average sequence difference within samples (1.3–4.2%) was comparable to those between samples (1.4–3.6%). MtDNA sequence-based statistical tests showed significant geographic differentiation between some local population samples, suggesting that the conger eel does not comprise a single panmictic population. However, given our sample sizes, these preliminary results should be interpreted with caution and more individuals from more sites, including the Mediterranean Sea, should be analyzed in detail. The genetic variability detected in this study is an initial step to elucidate the genetic background of the conger eel population structure.     

Optimising Denil fishways for passage of small and large fishes

Abstract  An 8-m long experimental fishway was trialled at three different slopes [8.3% (1:12), 14.3% (1:7) and 20% (1:5)] to examine the potential of the single-plane Denil fishway for the passage of small- and large-bodied native fishes in Australia. Fish between 45 and 630 mm ascended the fishway. The lowest slope enabled the full size range of bony herring Nematalosa erebi (Günther), from 45 to 350 mm fork length, to ascend the fishway successfully as well as a higher numerical proportion; 88% at the 8.3% slope compared with 31% at the 20% slope (fish numbers per trial = 33–3936). These results dispel the notion that Denil fishways are inherently poor for small fishes. Manipulating the design parameters of slope, length, width and possibly depth-over-breadth ratio enables Denil fishways to pass a wide size range of fish, which may greatly extend their present application and enable them to make a greater contribution to the rehabilitation of diverse fish communities.     

Ontogenetic habitat shifts and habitat use in an endangered minnow, Notropis mekistocholas

Henderson AR, Johnston CE. Ontogenetic habitat shifts and habitat use in an endangered minnow, Notropis mekistocholas . Ecology of Freshwater Fish 2010: 19: 87–95.
© 2009 John Wiley & Sons A/S
Abstract –  Information on larval and juvenile habitat use is virtually absent for fishes. Our objective was to document habitat use of larval and juvenile Cape Fear shiners Notropis mekistocholas , an endangered species, in both natural and lab settings so that a better understanding of habitat requirements in all life stages can be achieved. We measured habitat parameters of areas used by all life stages of N. mekistocholas in the summers of 2007–2008 in the Rocky River, North Carolina. Field data suggests larvae use more shallow depths (mean = 31.6 cm) and reduced water velocities (mean = 0.02 m·s⁻¹) than adults (mean = 56.3 cm, 0.10 m·s⁻¹), and juveniles 15–25 mm often school with adults. Results of lab studies support field observations. In the mesolarval and metalarval stages N. mekistocholas were selective in their use of water velocity ( P  = 0.013) and depth ( P  = 0.001). In multiple juvenile stages, N. mekistocholas were selective for water velocity ( P  = 0.015), and depth ( P  < 0.001), choosing deeper depths and higher water velocities than larvae. These results demonstrate ontogenetic shifts in habitat use of N. mekistocholas and suggest that water velocity and depth are critical to successful recruitment for this species.     

Age structure of Pacific saury Cololabis saira based on observations of the hyaline zones in the otolith and length frequency distributions

ABSTRACT:   The ages ( n  = 11 178) and length frequency distributions ( n  = 173 300) of Pacific saury Cololabis saira caught from September to November in 1989–2000 were examined. Most specimens were determined as either age 0 or 1 based on the number of annual rings in the otolith. The knob lengths (length from the tip of the lower jaw to the posterior end of the muscular knob on the caudal peduncle) at which 50% of the fish were age 1 ranged 277.8–304.7 mm. Analysis of length frequency distribution was also useful to divide the knob lengths of the two groups. The modal lengths of age 1 fish ranged 303.9–325.9 mm.     

Identification of alfonsino, Beryx mollis and B. splendens collected in Japan, based on the mitochondrial cytochrome b gene, and their comparison with those collected in New Caledonia

ABSTRACT:   The sequences spanning 307 bp of the mitochondrial cytochrome b gene were determined for 45 sepcimens of Beryx splendens and seven specimens of B. mollis collected in Japan, resulting in identification of 11 and three haplotypes in the two species, respectively. The parsimony tree was constructed from the determined sequences and those registered into the GenBank database as species A and W of B. splendens collected in New Caledonia, featuring with two clades. The first clade comprised species W from New Caledonia and B. mollis in the present study, whereas the second one contained species A from New Caledonia and B. splendens in the present study. These results demonstrate a large geographic distribution for both B. splendens and B. mollis. Some of the haplotypes found in Japan were identical to those of New Caledonia for both B. mollis and B. splendens , suggesting levels of gene flow at the trans -oceanic scale.     

Diet of introduced largemouth bass in Korean rivers and potential interactions with native fishes

Abstract –  A dietary analysis of largemouth bass ( Micropterus salmoides ), an exotic, piscivorous species, was conducted in large South Korean river systems (>third order streams, 31 sites). Micropterus salmoides larger than 100 mm exhibited intense piscivory on native Korean juvenile fishes, with levels of piscivory amongst the highest recorded globally, for native and introduced populations. Largemouth bass exhibited an ontogenetic shift in diet, showing a progressive increase in piscivory with size, typical of this species within its native range but unlike several studies on introduced largemouth bass in Europe and Africa. Sampling of fish communities at the same sites used for diet studies showed that native piscivores and the main food fish species of largemouth bass were significantly less abundant ( P  = 0.049 and 0.045, respectively) at sites where bass were present than at sites where no bass were recorded. Largemouth bass may pose a threat to the structure of fish assemblages in Korean river systems and further study of their population interactions and how to minimise their spread is needed.     

Proposal for stock-recruitment relationship for Japanese sardine <Emphasis Type="Italic">Sardinops melanostictus</Emphasis> in North-Western Pacific

ABSTRACT:   This study assessed the stock-recruitment relationship (SRR) for the Japanese sardine Sardinops melanostictus in the North-western Pacific. Of the 20 SRR models investigated, the Akaike information criterion (AIC) was the minimum (AIC = 551.2) when the data were separated into two groups (A and B) and the log-normal distribution was applied as the error term. Group A was constructed with SRR data from 1976–1987 and 1992–2004. Group B consisted of data from 1988–1991. The AIC minimum model was R  = 22.8 S  ×  e ^ε for Group A, where R , S , and ε denote the recruitment of sardine (individual number of 0-year old fish), spawning stock biomass (SSB), and error term, respectively. This model indicated that recruitment was proportional to the SSB and that no density-dependent effect operated over the range of SSB investigated (51 000–11.3 million t). Recruitment was markedly higher (lower) when the sea surface temperature (SST) of the Kuroshio Extension area in February was low (high). The essential SRR can simply be expressed as R  = 22.8 S  ×  e ^ε with the level of recruitment deviating from the model to a greater or lesser degree depending on the environmental conditions.     

The food habits of four species of triakid sharks, Triakis scyllium, Hemitriakis japanica, Mustelus griseus and Mustelus manazo, in the central Seto Inland Sea, Japan

ABSTRACT:   The food habits of 595 houndsharks of four species, Triakis scyllium ( n  = 179, 42–148 cm total in length), Hemitriakis japanica ( n  = 57, 42–102 cm), Mustelus griseus ( n  = 193, 39–100 cm), and Mustelus manazo ( n  = 166, 43–120 cm), found in the central Seto Inland Sea, Japan, from March 1997 to October 1999 and May 2000 to July 2002, were studied. T. scyllium changed their main food items from shrimps to echiuran worms then to cephalopods with their growth. Comparing food habits by the value of similarity (maximum = 1), the small-sized T. scyllium had a low value (0.17) compared to larger sharks. T. scyllium gradually increased the diversity of food until it reached 700 mm long in total length, however, after that it decreased. H. japanica appeared mainly in summer and autumn and ate cephalopods and fishes. M. griseus preyed on various crustaceans and decreased the diversity of food with growth. M. manazo preferred crustaceans and polychaetes. There was no certain tendency in the diversity of the food habit for M. manazo .     

Annual changes in distribution depths of bighand thornyhead <Emphasis Type="Italic">Sebastolobus macrochir</Emphasis> off the Pacific coast of northern Honshu,Japan

ABSTRACT:   Body size dependent distribution patterns of bighand thornyhead Sebastolobus macrochir were examined using bottom trawl surveys in the Tohoku area, off the Pacific coast of northern Honshu, Japan. In northern and southern Tohoku, distribution depths of ≤10-cm standard length (SL) fish increased from 500–600 m in 2003 to 600–700 m in 2005 with an increase in density of 11–20-cm SL fish at depths of 500–600 m. In 2004–2005, small fish (≤10 cm SL) were distributed in deeper waters than large fish (11–20 cm SL). In ≤20-cm SL fish, the main distribution depths changed from 300–600 m in 1997–2002 to 500–600 m in 2003 in southern Tohoku, but not in northern Tohoku. Stepwise multiple regression analysis showed that negative correlations were found in biomass densities between a few demersal fish species and bighand thornyhead at depths of 300–400 and 400–500 m in southern Tohoku. These results suggest that distribution of bighand thornyhead was affected by intra- and interspecific competitions in the Tohoku area.     

Authentication of flying-fish-meal content of processed food using PCR-RFLP

Nucleotide sequence and polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP) analysis of the 3′-portion of the mitochondrial 16S RNA gene (rDNA) coding sequence were used to differentiate between flying fishes and other fishes that are frequently used in ago-noyaki production. In this study, we successfully distinguished between flying fishes and the other fishes by combining amplified DNA fragments with universally designed primers and digesting the PCR products with AfaI and MfeI restriction endonucleases. PCR-RFLP of 15 ago-noyaki, 2 noyaki, and 8 other processed flying-fish products were analyzed to authenticate flying-fish content among processed seafood products. After digestion of the PCR products with both enzymes, we found that all ago-noyaki and processed flying fish products contained either two or three DNA fragments of ~200, 300, and 530 bp, and noyaki samples (which do not contain flying fish) contained only one fragment of ~530 bp. Here, we present a new procedure to confirm the content of flying-fish meal in ago-noyaki.     

鳀科鱼类线粒体全基因组序列结构特征及系统发育信息分析

为了解鳀科鱼类的线粒体全基因组序列结构特征及系统发育信息,以期为进化遗传学研究和分子标记的选取提供参考依据,对已知的10种鳀科鱼类的线粒体全基因组进行分析。结果显示:1)鳀科线粒体基因组全序列长度在16 660 bp到17 069 bp之间,基因组的结构和基因排列顺序与其它硬骨鱼类一致。2)比对后获得一致序列长度为15 704 bp(不含D-loop),其中变异位点5 570个,占所有位点数的35.5%。在编码基因中,序列变异程度和Kimura双参数遗传距离最大的是ND6基因(分别是47.5%和0.276),最小的是tRNA拼接序列(分别为18.7%和0.072)。3)基于Ka-Ks的Z检验和Tajima’s D检验表明蛋白质编码基因主要受到净化选择(即负选择,purifying selection)的作用;其中12个蛋白质编码基因(ND6除外)有强烈的净化选择(Ka/Ks<1),而ND6基因受正选择(positive selection)影响较大(Ka/Ks>1)。4)ND4、ND2和Cytb是进行鳀科鱼类系统发育分析的较为理想的分子标记。     

Occurrence of postmortem myoliquefactive kudoosis in Atlantic mackerel, Scomber scombrus L., from the North Sea

Members of the myxosporean genus Kudoa occur in various marine teleosts worldwide. Several species are of concern to the fishery and aquaculture industries as they may produce unsightly cysts in the fish host's musculature or are associated with postmortem myoliquefaction of the fish muscle, commonly referred to as 'soft flesh'. This study describes the occurrence and effects on a host of a Kudoa species in Atlantic mackerel, Scomber scombrus , from the northern North Sea. Generalized postmortem myoliquefaction associated with Kudoa sp. occurred in 0.8% of the examined fish, i.e. 11 of 1339 mackerel developed 'soft flesh'. There was a significant difference in the prevalence of myoliquefaction between medium sized (400–600 g) and large mackerel (>600 g). The prevalence reached 8.9% in the latter host size group. No subclinical infections of Kudoa sp. were detected when examining fresh muscle ( n  = 103) and blood ( n  = 165) samples for spores using light microscopy. Affected mackerel developed generalized myoliquefaction after 38–56 h post-catch. No inflammatory host response was associated with the presence of plasmodia within single body muscle fibres of 'soft flesh' affected fish. Based on comparison of myxospore dimensions and analysis of the nuclear small subunit (SSU) ribosomal DNA, the present Kudoa species is assigned to Kudoa thyrsites . However, due to the species' apparently very wide geographical distribution and host range, its varying effect on different fish host species, together with the still unknown life cycle of Kudoa spp., the taxonomic status of K. thyrsites appears not to be fully resolved.     

Analysis of the trophy sport fishery for the speckled peacock bass in the Rio Negro River, Brazil

Abstract  The middle portion of the Rio Negro River in Brazil near the equator supports a popular recreational sport fishery for speckled peacock bass, Cichla temensis (Humboldt). The objective of this study was to determine the effect of fishing mortality on this population. Fish were collected from sport-fishing ( n  = 72) and commercial ( n  = 103) catches and otoliths were aged to estimate longevity, growth and natural mortality. Recreational anglers in this region seek to catch, then release, larger speckled peacock bass; and fish larger than 62 cm standard length (SL) (about 4.5 kg) served as a bench mark to assess the potential impact of subsistence and commercial harvest on the abundance of larger fish in the sport fishery. Time of opaque band formation on otoliths generally coincided with the dry season (November to April); these bands appeared to form once per year, but formation was highly variable. Speckled peacock bass grew to 62 cm SL on average in 6.4 years, but some fish obtained this size in 4–5 years. Maximum age was 9 years, but most fish were less than 7 years. Instantaneous annual natural mortality ( M ) estimated from maximum size, longevity and growth ranged from 0.19 to 0.44. Simulation modelling predicted that exploitation rates of fish >25 cm SL similar to the estimated natural mortality rates would reduce the abundance of fish >62 cm by 67–89% compared with no harvest. Even modest exploitation rates of 5% and 10% would result in approximately 30–50% reduction, respectively, of these larger fish. Abundance of large speckled peacock bass that sustains the sport fishery is susceptible to low rates of exploitation in this remote region of Brazil.     

Genetic comparison between torafugu <Emphasis Type="Italic">Takifugu rubripes</Emphasis> and its closely related species karasu <Emphasis Type="Italic">Takifugu chinensis</Emphasis>

Abstract:   Sequence analyses of mitochondrial (mt) and nuclear genes were performed for genetic comparison between two Takifugu pufferfish species: torafugu T. rubripes and karasu T.  chinensis . With a sequence coverage of 20% in mtDNA, 640, 308, 344, 522 and 697 bp encoding mt 16S ribosomal RNA (rRNA), adenosine triphosphatase 6 ( ATPase 6 ), nicotinamide adenine dinucleotide dehydrogenase subunit 4 ( ND4 ), ND5 and cytochrome b (cyt b ), respectively, among 24 wild torafugu, 24 wild karasu and six hybrid-like samples, 15% of the torafugu identified by external color patterns showed nucleotide sequences consistent with karasu. Meanwhile, sequences of 60% karasu were consistent with those registered for torafugu (AJ421455). As for the hybrid-like samples, two possessed karasu-specific sequences in some base positions while torafugu-specific sequences in others. The remaining hybrid-like samples possessed torafugu-specific sequences. On the other hand, the mt control region did not show such type of consistency. Analysis of nuclear melanocortin receptor genes ( MC1R , MC4R ) among 54 samples showed 99–100% inter- and intraspecific sequence identity. Partial nuclear 18S  rRNA, complete internal transcribed spacer 1 ( ITS1 ), partial 5.8S  rRNA and ITS2 genes showed similar levels of identity, indicating a very low level of variation in their respective gene fragments between the two Takifugu species.     

Dynamic in-lake spawning migrations by female sockeye salmon

Abstract –  Precise homing by salmon to natal habitats is considered the primary mechanism in the evolution of population-specific traits, yet few studies have focused on this final phase of their spawning migration. We radio tagged 157 female sockeye salmon ( Oncorhynchus nerka ) as they entered Lake Clark, Alaska, and tracked them every 1–10 days to their spawning locations. Contrary to past research, no specific shoreline migration pattern was observed (e.g., clockwise) nor did fish enter a tributary unless they spawned in that tributary. Tributary spawning fish migrated faster (mean = 4.7 km·day⁻¹, SD = 2.7, vs. 1.6 km·day⁻¹, SD = 2.1) and more directly (mean linearity = 0.8, SD = 0.2, vs. 0.4, SD = 0.2) than Lake Clark beach spawning fish. Although radio-tagged salmon migrated to within 5 km of their final spawning location in an average of 21.2 days (SD = 13.2), some fish migrated five times the distance necessary and over 50 days to reach their spawning destination. These results demonstrate the dynamic nature of this final phase of migration and support studies indicating a higher degree of homing precision by tributary spawning fish.     

Identification of imported Chirimen at the genus level by a direct sequencing method using mitochondrial partial 16S rDNA region

ABSTRACT:   Quality control of imported fish products is a constant challenge for Customs officials. To help officials access the quality and integrity of imported fish products, and to enhance the effectiveness and accuracy of product screening, a method was developed to identify boiled and dried larval and juvenile sardines (Chirimen) at the genus level by direct sequencing using a partial sequence (606 bp) of mitochondrial 16S rDNA. A phylogenetic tree was constructed, based on nucleotide sequences of seven kinds of Chirimen imported from four countries with 16 standard samples belonging to the orders Clupeiformes and Salmoniformes. To identify the fish genera in imported Chirimen, bootstrap values and branch lengths of the phylogenetic tree as well as genetic distances were used. The data revealed that Chirimen imported from China and Korea contains species of the genus Engraulis . Regarding other imported Chirimen, the least that could be verified was that the sardine ingredients do not belong to regulated genera.     

Effects of radio-transmitter antenna length on swimming performance of juvenile rainbow trout

Abstract –  Technological advances have lead to the production of micro radio-transmitters capable of being implanted in fish as small as c . 5 g. Although the actual tags are small, transmitters are equipped with long antennas that can increase drag and tangle in debris. We examined the effects of radio-transmitter antenna length on the swimming performance of juvenile rainbow trout, Oncorhynchus mykiss , ( N  = 156, mean mass = 34 g, mean fork length = 148 mm). Although we tested a variety of different antenna lengths up to a maximum of 300 mm, only the longest antenna significantly impaired swimming performance relative to control fish ( P  < 0.001). There was no difference in swimming performance between the sham (surgery, but no transmitter) and the control fish (handled, but no surgery), suggesting that the surgical procedure itself did not negatively affect the fish. Regression analysis, however, indicated that there was a significant decrease in swimming performance associated with increased antenna length ( R ² = 0.11, P  < 0.001). In addition, when held in laboratory tanks, fish with the three longest antennas (150, 225 and 300 mm) frequently became entangled with the standpipe. We suggest that researchers, under the guidance of the tag manufacturer, trim antennas to the shortest possible length required to detect fish in their specific study area. Antenna length is clearly an important issue for small fish, especially for species that inhabit complex habitats where antennas may become entangled, and where fish must attain speeds near limits of their swimming capacity.