Influence of forest cover and mesohabitat types on functional and taxonomic diversity of fish communities in Neotropical lowland streams

Abstract – In this study, we investigated how taxonomic and functional diversity of fish communities is influenced by forest cover and mesohabitat types in Neotropical lowland streams. We sampled fish fauna of 126 five‐metre‐long mesohabitats using an electrofishing unit in forested (n = 3) and deforested (n = 3) streams in the upper Paraná River basin, south‐eastern Brazil. According to velocity and depth, three mesohabitat types have been considered: riffles (shallow and fast‐flowing habitat), pools (deep and slow‐flowing habitat) and runs (intermediate depth and velocity). Seven functional traits and 27 trait categories related to ecological, behavioural and life‐history aspects of fish were considered. Our results indicate that forest cover and mesohabitat type influence fish communities in different ways. Whereas deforestation affects communities primarily through changes in diversity (functional and taxonomic), mesohabitat types determine changes in the functional composition. The increased diversity in deforested mesohabitats is driven by a decrease in species turnover among habitat patches within streams. This can be attributed to new feeding opportunities and microhabitat availabilities in deforested streams so favours the occurrence of species having a particular set of traits, indicating a strong habitat–trait relationship.     

Trophic structure of fish assemblages from Mamoré River floodplain lakes (Bolivia)

Abstract –  The fish assemblage of the floodplain of the Mamoré River (Bolivia) was estimated in eight lakes, corresponding to four habitat types, situated on an environmental gradient related to the river distance: lakes situated near the river, in the forested floodplain, at the floodplain edge and lakes isolated in the savanna. This paper documents the diet of 71 fish species (among the 140 recorded) and compares the taxonomic and trophic structure of fish assemblages between four lake types. The diet analysis was conducted to determine five trophic guilds: algivores/iliophages, herbivores, zooplanktivores, invertivores and piscivores. The taxonomic and trophic structures of the fish assemblages were not similar in the different lake types of the Mamoré River. The trophic structure of assemblages showed a coarse pattern of dominance of algivores/iliophages and invertivores, but different situations were observed in relative abundance of the trophic groups in relation to the spatial position of the lakes (except for piscivores). Lakes close to the river appeared more favourable to the microphages (algivores/iliophages, zooplanktivores) although remote lakes appeared more favourable to the macrophages (invertivores, herbivores). These results support the general idea that fish distribution follows a pattern linked to the ecology of the species, and related to environmental characteristics of the lakes.     

Assessing stream quality using information on mesohabitat distribution and character

1. The purpose of this paper is to demonstrate: (i) how mesohabitats—medium‐scale habitats which arise through the interactions of hydrological and geomorphological forces—can be used as a basis for assessing instream habitat diversity; (ii) how combining data on mesohabitat distribution with those from macroinvertebrate sampling can produce an index for assessing stream quality; and (iii) how, when nested with River Habitat Survey (RHS), mesohabitat information can provide a comprehensive assessment of stream quality. 2. A survey of a small chalk stream in southern England showed that the distribution of mesohabitats varied considerably between reaches. However, a mesohabitat quality index, derived from data on mesohabitat distribution and faunal communities, indicated that there was relatively little longitudinal variation in stream quality as defined by mesohabitat diversity and macroinvertebrate community. Heavy modification of the channel banks, as indicated by RHS, suggested significant habitat impoverishment. 3. Simulations, using different environmental conditions, suggested that the mesohabitat quality index was a potentially useful measure of stream quality. 4. The combination of mesohabitat survey and RHS provided a more comprehensive view of the stream channel and banks than either technique used alone. The study indicated that management efforts to rehabilitate impoverished reaches should be directed towards maximizing instream mesohabitat diversity and mitigating human impacts on the river margin. Copyright © 2000 John Wiley & Sons, Ltd.     

Habitat heterogeneity in eelgrass fish assemblage diversity and turnover

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基于河流网络体尺度的皖河河源溪流鱼类群落的空间格局

2013年7-8月对大别山皖河河源1～3级溪流的鱼类进行了调查,着重从河流网络体空间尺度研究了鱼类多样性及群落结构的空间格局,探讨了局域栖息地条件和支流空间位置对鱼类群落的影响.1～3级溪流间,鱼类物种数随溪流级别增大显著增多,但个体数无显著变化(P＞0.05);长河、潜水和皖水3条支流间鱼类物种数和个体数均无显著差异(P＞0.05).鱼类物种数受局域栖息地条件(海拔)和支流空间位置(河流级别和下游量级)的联合影响,但鱼类个体数仅受局域栖息地条件(海拔)的影响.不同溪流级别和不同支流间的群落结构均无显著差异(P＞0.05).同物种数类似,鱼类群落结构也受局域过程(海拔)和空间过程(汇合量级和下游量级)的联合影响.本研究表明,总体上皖河河源溪流网络体中的鱼类群落是局域过程和空间过程联合作用的产物.因此,为合理保护和管理皖河河源的溪流鱼类物种,有必要兼顾局域栖息地条件与河流网络连通性的保护和恢复.     

Coralligenous assemblages along their geographical distribution: Testing of concepts and implications for management

• 1. The coralligenous habitat was studied at the large Mediterranean scale, by applying a standardized, non‐destructive photo‐sampling protocol, developed in the framework of the CIGESMED project.
• 2. The results provided evidence to support the following statements: (a) the assemblage pattern is not homogeneously distributed across the four Mediterranean ecoregions studied (biotic gradients hypothesis); and (b) the assemblage pattern does not change significantly when the information is aggregated to higher taxonomic levels (taxonomic sufficiency hypothesis).
• 3. Surrogate taxonomic categories higher than species, such as genus and family, can be used to reveal the multivariate pattern of the coralligenous assemblages.
• 4. Although preliminary at the pan‐Mediterranean scale, these outcomes set the scene for future comparisons as more data sets become available but also for comparisons between taxonomic and functional patterns.

     

Fish trait diversity in littorals of two floodplain lakes of the highly biodiverse Caura River,Venezuela

We studied the trait diversity and structure in the fish communities of two floodplain lakes of the Caura River: Aricagua and Paramuto, during one hydrological cycle. We calculated taxonomic and a functional alpha and beta diversities and made comparisons among hydrological seasons and among habitats within each lake based on rarefactions. The trait structure was explored with an RLQ (analysis of a table R of environmental conditions, a table L of abundances of species and a table Q of species traits) analysis, and pairwise relationships between environmental variables and traits were explored with fourth‐corner analyses. Despite its smaller extension, Paramuto showed higher alpha taxonomic and trait diversities. The substrates of open sand and those covered by leaf litter were the most diverse habitats in terms of both species and traits. The trait structure of the fish communities was influenced by the hydrological seasons, the lakes as well as water pH and temperature, and in a lesser degree dissolved oxygen, habitat type and total dissolved solids in the water. These factors constitute the habitat templet for the fish community's composition and trait structure.     

Effectiveness of habitat classes as surrogates for biodiversity in marine reserve planning

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Mayflies (Ephemeroptera) as indicators of environmental changes in the past five decades: a case study from the Morava and Odra River Basins (Czech Republic)

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Requirements for marine protected areas to conserve the biodiversity of rocky reef fishes

• 1. This study describes spatial patterns in the biodiversity (species, assemblages) of rocky reef fishes at a spatial scale relevant to management, and compared the outcomes for this biodiversity from alternative procedures for selecting marine protected areas (MPAs) and from the selection of MPAs for fisheries‐related objectives.
• 2. The study area included 104 species in two assemblage types; 36 species and 14 species occurred only in one or two locations respectively.
• 3. MPAs selected by hotspot richness, greedy richness complementarity, and summed irreplaceability included similar percentages of species and significantly more species than randomly selected MPAs. A combined species‐assemblage selection ensured representation of assemblage diversity. Representation of all species and assemblage types required 92% of locations.
• 4. MPAs chosen using density of all fishes or density of exploitable fishes as selection criteria included fewer species (than MPAs selected using species identity) and the percentage of species accumulated did not differ from a random selection.
• 5. Use of an established MPA as the seed for an expanded network was inefficient, leading to additional locations being required and an accumulation of species that did not differ from a random selection.
• 6. The smallest MPA network that fulfilled multiple management objectives (representation of assemblage diversity and majority of species, population viability, support for fisheries, connectivity) required 30% of the surveyed locations.
• 7. This study concluded that: MPAs selected without the benefit of data on intra‐habitat variation in species assemblages will be unrepresentative; the upper range of currently promoted targets for MPA establishment (i.e. 30%) should be regarded as a minimum for biodiversity conservation; MPAs selected for fisheries‐related reasons may not provide expected benefits for the remainder of the fish assemblage.

Copyright © 2006 John Wiley & Sons, Ltd.     

Spatio‐temporal patterns of fish assemblage structure in a coastal plain stream: appropriate scales reveal historic tales

Quantifying assemblage structure across spatio‐temporal scales is ecologically important and further aids in the understanding of community organisation processes. Currently, few studies have assessed assemblage structure across generous magnitudes of scale, and influences of processes (biotic and abiotic) responsible for structuring assemblages are still questioned. Using community and hydrologic data collected over a 22‐year period from a stretch of river nearing 150 km, we examined spatio‐temporal fish assemblage structural patterns in a temperate coastal plain stream. Results indicated that significant changes in assemblage structure across time were influenced by environmental disturbances, including drought and hurricane events. Assemblages were restructured in a punctuated manner directly following these events, and complete recovery of initial assemblage structure did not occur across the study period. Additionally, we found spatial differentiations between upstream and downstream assemblages, which were driven by greater abundances of several species in downstream sites. Our results suggest that assemblage structure is influenced by environmental variation, specifically, extreme disturbance events and spatial habitat heterogeneity.     

Fish assemblages of perennial floodplain ponds of the Sacramento River, California (USA), with implications for the conservation of native fishes

To assess the likelihood of enhancing native fish populations by means of floodplain restoration projects, habitat characteristics and fish assemblages of seven perennial floodplain ponds in Yolo Bypass, the primary floodplain of the Sacramento River, California (USA), were examined during summer 2001. Although all ponds were eutrophic, based upon high chlorophyll a or dissolved nutrient concentrations, relatively large shallow ponds generally exhibited higher specific conductivity and dissolved phosphorus concentrations than small deep ponds, which exhibited greater water transparency and total dissolved nitrogen concentrations. Using multiple gear types, 13 688 fishes comprising 23 species were collected. All ponds were dominated by alien fishes; only three native species contributing <1% of the total number of individuals and <3% of overall biomass were captured. Fish assemblage structure varied among ponds, notably between engineered vs. natural ponds, and was related to specific conductance, total dissolved solids and water transparency.     

Fish nursery habitat function of the main channel,floodplain tributaries and oxbow lakes of a medium‐sized river

Small, adventitious tributaries (<3 orders of magnitude smaller than the stream it flows into) are a conspicuous feature of many river–floodplain systems, but their value as fish reproduction and nursery habitat is not well understood compared to oxbow lakes and the main river channel (MRC). Moreover, connectivity of tributaries to the MRC is often less impacted by anthropogenic modifications (e.g., dams and levees) compared to oxbow lakes. From April to July 2012, larval and juvenile fish were collected in the Fourche LaFave River (Arkansas, USA) system to better understand fish nursery habitat function of tributaries relative to oxbow lakes and the MRC. Nonmetric multidimensional scaling ordination of juvenile and larval fish genera revealed distinct fish assemblages in MRC and floodplain habitats. Ordination of juvenile fish at the species level resulted in distinct fish assemblages in tributary versus oxbow lake habitats. Tributaries had more unique species and higher abundance of shared species than oxbow lakes and MRC. Additionally, of the 46 species identified, all but six were collected in lower tributary reaches. Connectivity was strongly associated with both ordinations and was important in describing patterns of fish variation among habitats and between tributaries. Of the tributaries sampled, the least fragmented stream had the most similar fish assemblages between upper and lower sections. Findings of this study revealed tributaries are an important, yet overlooked, feature in the river–floodplain model. Especially in years of drought, channel–floodplain connectivity can be limited, but tributaries can be used by fishes for reproduction and nursery habitat.     

The significance of shore height in intertidal macrobenthic seagrass ecology and conservation

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Fish assemblages in Atlantic Forest streams: the relative influence of local and catchment environments on taxonomic and functional species

Streams are under environmental pressures acting at different scales that influence the ecological organisation of their fish assemblages. However, the relative influence of the different scale‐related variables on assemblage composition and function is poorly understood. We evaluated the importance of local‐ and catchment‐scale environmental variables, as well as the spatial structure of the sampling sites, in shaping fish assemblages in Atlantic Forest streams. Local‐scale variables were those measured at the sampling sites, describing the local habitat conditions (e.g. depth, substrate type, altitude). Catchment‐scale variables were those integrating the upstream landscape of the sampling sites (e.g. catchment land use). Spatial distances were calculated from watercourse distance using principal coordinates of neighbour matrices. Altogether, 28 local and seven catchment variables were initially subjected to two processes of eliminating co‐linearity. Redundancy analysis was applied to the three matrices (spatial, local and catchment) to quantify the variance in the structure of the fish assemblages explained by each matrix. Local variables explained more variability in both taxonomic and functional assemblage structure, than catchment and spatial variables. Local variables also changed along the longitudinal gradient, which consequently influenced fish assemblage structure. This pattern was also influenced by anthropogenic alteration and non‐native species, which were more abundant in downstream sites. These results highlight the need to assess Atlantic Forest streams under different environmental scales, especially through the use of quantitative local‐scale metrics, and to consider the effects of longitudinal patterns in structuring fish assemblages when developing and implementing monitoring programmes, impact studies and conservation plans.     

Effects of within-patch habitat structure and variation on fish assemblage characteristics in the Bernecei stream, Hungary

Abstract –  Over a 3-year period we examined variability in physical habitat structure and species richness, abundance and assemblage composition of fishes in 13 habitat patches in the Bernecei stream, Hungary. Principal component analysis of habitat structure data from patches elucidated a riffle-run-pool habitat gradient across patches. Temporal habitat variability increased significantly from riffle to pool patches. Fish assemblage characteristics displayed relatively continuous change over the habitat gradient and were relatively stable within patches. Assemblage structure properties (e.g., species richness) displayed different responses to the habitat gradient and to within-patch habitat variability. In general, pool patches had more diverse assemblages and greater within-patch assemblage variability than riffle patches. However, within-patch dynamics were largely determined by the population dynamics of a habitat generalist (i.e., minnow). Broad scale environmental variability (i.e., a catastrophic 100-year flood) also appeared to affect within-patch fish assemblage characteristics. Our results demonstrate that fish assemblage structure is influenced by physical variability (i.e., both floods and spatio-temporal habitat variability) within the Bernecei stream.     

Linking fish ecomorphotypes to food categories and local-scale habitat uses along a Brazilian coastal stream

Fish ecomorphological analyses often deal with several traits simultaneously, making it challenging to interpret general patterns, and have not addressed the longitudinal component of streams in morphology-habitat relationships. We identified ecomorphotypes of fishes and correlated their morphological variation with food, structural/hydrological variables, and abundances to detect their links with diet and local-scale habitat categories. Eighteen morphometric traits were obtained from specimens collected by electrofishing in a coastal Atlantic stream in Brazil. To test for morphology-habitat associations, headwaters, middle, and mouth reaches were divided into shorter sampling sites, with the middle reach being classified into riffle, run, and pool mesohabitats. Multivariate analyses highlighted the morphological variations and associated the form categories of 18 fish species with food and habitat categories. It resulted in four combined trophic and habitat ecomorphotypes: (1) benthic AB/lithophilic, composed of smaller to longer loricariids, detritivores, of fast-water, and pebbly habitats; (2) benthic C/lithophilic of very fast-waters, algal and detritus scrapers, with longer intestines than the other benthic species, wider suctorial mouths, inhabitants of headwaters, and riffles habitats; (3) nektobenthic/lithophilic with streamlined bodies, invertebrate feeders, and dwellers of faster-water, cobbly habitats; and (4) nektonic/limnophilic composed mainly by characins, which had strong correlations with terrestrial insect consumption, and lentic/pool, sandy habitats. The morphology–environment correlations linked these ecomorphotypes to the broad habitat gradient arrayed in longitudinal and local scales. These results permit inferring the larger form patterns expected for local fish assemblages and emphasise the fish trait categorisation as a possible surrogate to reveal broader ecomorphological associations.     

The use of littoral mesohabitats and their macroinvertebrate assemblages in the ecological assessment of lakes

• 1. Historically, ecological assessment of lakes has depended on open‐water chemical and phytoplankton analysis, with trophic status determined by chlorophyll a and total phosphorus following the general protocol of the OECD lake classification scheme. This has been accompanied by a prevailing opinion that the littoral zone of lakes is too heterogeneous to allow meaningful inter‐lake comparisons.
• 2. Council of the European Communities Directive 2000/60/EC establishing a framework in the field of water policy (the Water Framework Directive) requires a broader approach to ecological assessment, including the need to incorporate a range of biotic variables. This paper describes the results of a monitoring programme designed to determine within‐ and among‐lake variation of macroinvertebrate communities found in defined mesohabitats of 22 lakes incorporating a range of lake types. Three sampling approaches were applied to the study.
• 3. Triplicate macroinvertebrate samples from a cobble/pebble mesohabitat of 11 lakes showed that community composition from a standard habitat was robust.
• 4. Twinned samples from contrasting habitats of pebble/cobble and macrophyte dominated mesohabitats of 21 lakes had greater similarity within than among lakes. This showed that even across contrasting habitat structure, macroinvertebrate assemblages can provide a reliable lake‐specific indicator.
• 5. Multivariate analysis of replicate samples from 15 visually distinct mesohabitats in one lake showed that within‐lake variation could, nevertheless, be identified as distinct clusters of invertebrate assemblages.
• 6. Conclusions from the work are that variations within lakes were nested in among‐lake variation across a range of lake types, and that macroinvertebrate assemblages can provide meaningful assessment of ecological differences across lakes. Monitoring can, however, produce a substantial amount of ‘noise’ from the data that reflects the complexity of macroinvertebrate community structure in littoral zones. It is recommended that incorporation of macroinvertebrates in ecological assessment is most useful when confined to well defined mesohabitats rather than attempt to incorporate a complete range of mesohabitats within a single lake.

Copyright © 2003 John Wiley & Sons, Ltd.     

Longitudinal variation in fish species composition in the Angabanga river, Papua New Guinea with observations on the trophic status of certain fish species

Abstract– Longitudinal variation in fish species composition at various sites on the Angabanga river showed an increase in diversity from source to mouth and that only a few fish species occur at all sites. The fish assemblage of floodplain pool areas contained fewer species than the main channel and was dominated by two exotic species Oreochrornis mossambicus (Peters 1852) and Trichoguster pectoralis (Regan 1910). Most native fish species utilize invertebrates as a food source. The absence of indigenous detritus/substrate feeders in the Angabanga community may account in part for the success of the two introduced species on the floodplain.     

Spatial and temporal variation in fish community structure and diversity in the largest tropical flood‐pulse system of South‐East Asia

The Tonle Sap River and Lake (TSRL) is South‐East Asia's largest tropical flood pulse with a flow‐reversal system that supports one of the world's largest freshwater fisheries. However, among the world's tropical floodplains, the resources of the TSRL have received little ecological research. Here, we described the spatiotemporal TSRL fish diversity and community variation using daily records from 2012 to 2015 on fish abundance from six sites covering the TSRL system. We found that high fish diversity occurred in sites located in the middle of Tonle Sap Lake, and the lowest diversity was observed in the southern section. The spatial abundance distribution patterns displayed a river–lake gradient, with three fish assemblages that were clustered based on their composition similarities and were characterised by 96 indicator species. In the southern section, fish assemblages were characterised by longitudinal migratory fishes; in contrast, in the middle system, fish assemblages were represented by species with combined ecological attributes (i.e. longitudinal and lateral migratory species and floodplain residents). Towards the northern section, fish assemblages were composed of lateral migratory and floodplain resident species. Species richness and abundance peaked at approximately 2–2.5 and 4 months, respectively, after the peak flow in early October, during which Tonle Sap River resumes its normal flow direction (outflow). This suggests that seasonal flood pulses (i.e. rising and falling water levels) play a pivotal role in structuring spatiotemporal variation in the TSRL fish assemblages. Our study has implications for fisheries monitoring and conservation initiatives.