Millimetre scale aeration of the rhizosphere and drilosphere

Soil aeration is a critical factor for oxygen-limited subsoil processes, as transport by diffusion and advection is restricted by the long distance to the free atmosphere. Oxygen transport into the soil matrix is highly dependent on its connectivity to larger pore channels like earthworm and root colonised biopores. Here we hypothesize that the soil matrix around biopores represents different connectivity depending on biopore genesis and actual coloniser. We analysed the soil pore system of undisturbed soil core samples around biopores generated or colonised by roots and earthworms and compared them with the pore system of soil, not in the immediacy of a biopore. Oxygen partial pressure profiles and gas relative diffusion was measured in the rhizosphere and drilosphere from the biopore wall into the bulk soil with microelectrodes. The measurements were linked with structural features such as porosity and connectivity obtained from X-ray tomography and image analysis. Aeration was enhanced in the soil matrix surrounding biopores in comparison to the bulk soil, shown by higher oxygen concentrations and higher relative diffusion coefficients. Biopores colonised by roots presented more connected lateral pores than earthworm colonised ones, which resulted in enhanced aeration of the rhizosphere compared to the drilosphere. This has influenced biotic processes (microbial turnover/mineralization or root respiration) at biopore interfaces and highlights the importance of microstructural features for soil processes and their dependency on the biopore's coloniser.     

Contribution of anecic earthworms to biopore formation during cultivation of perennial ley crops

Large sized biopores (diameter >2 mm) in the subsoil can be created by tap roots, which leave voids after their decay, or by the burrowing activity of anecic earthworms which may benefit from the temporary lack in tillage in perennial cropping systems. However, the interactions between root growth and earthworm activity in the process of biopore formation during perennial ley cropping are not well understood. The aim of this field study was to quantify the development of the abundance of the anecic earthworm Lumbricus terrestris and the biopore density during the cultivation of lucerne (Medicago sativa L.), chicory (Cichorium intybus L.) and tall fescue (Festuca arundinacea Schreb.) grown for either one, two or three years. An increased abundance of L. terrestris was already recorded after two years of continuous ley when compared with one year cultivation. The ley crop species had only minor influence on the abundance of L. terrestris. Biopore densities of both diameter classes under study (2–5 mm and >5 mm) were not significantly affected by the duration of ley cropping. In contrast, biopore densities were influenced by ley crop species. More biopores of diameter class 2–5 mm were recorded after chicory than after fescue. Lucerne cropping resulted in intermediate biopore density. Additionally, in an incubation experiment under field conditions, we quantified whether L. terrestris preferentially created new biopores or colonized abandoned, previously existing ones. After three weeks of incubation, one third of the adult individuals incubated in the experimental area created new biopores at 0.4 m soil depth. A similar percentage of individuals colonized previously existing biopores, partially widening the lumen of smaller sized biopores. The remaining individuals remained in the topsoil. Sub-adult individuals rarely formed new pores. Half of the introduced sub-adults remained in the topsoil. We conclude that in crop rotations new biopores can be generated during perennial ley cropping by taproot systems of ley crops, but that a two to three- year period without tillage is not sufficient for populations of anecic earthworms to make a marked contribution to biopore density in the subsoil. The relevance of anecic earthworms for altering physical and chemical properties of biopores during ley cropping still needs further investigation.     

Millimetre‐scale distribution of organic matter composition at intact biopore and crack surfaces

Structured subsoil horizons are characterized by biopores and shrinkage cracks, which may serve as preferential flow paths. The surfaces of cracks and biopores may be coated by clay‐organic material. The spatially‐distributed organic matter (OM) composition at such structural surfaces was studied at the millimetre scale using diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy in the mid‐infrared range (MIR). Intact biopores such as earthworm burrows and root channels, and crack surfaces of nine subsoil horizons were analysed. The samples were from arable and forest Luvisols, one Regosol, one Stagnosol and Cambisols developed from loess, till, mudstone and limestone. For better comparison between soils, the DRIFT signal intensities were corrected for the particle‐size effects. The OM was characterized by the ratio between alkyl‐ (C–H) and carbonyl (C=O) functional groups (C–H/C=O), which represent an index of the potential wettability (PWI) of the OM. The PWI was larger for biopores than for crack surfaces and the soil matrix, indicating a smaller potential wettability of OM at biopore surfaces. The millimetre‐scale spatial variability of OM was especially large for the surfaces of root channels. Samples from till‐derived Luvisols had smaller PWI (with greater potential wettability than surfaces from loess‐derived Luvisols) than other soil types. The mean PWI of the arable Luvisol crack surfaces was less than that of the forest Luvisol samples. The results suggest that the spatial distribution of OM properties at intact structural surfaces may be important for describing sorption and mass transfer processes during preferential flow.     

Influence of biopores on root growth,water uptake and grain yield of wheat (Triticum aestivum) based on predictions from a computer model

Summary The use of vertical biopores by wheat (Triticum aestivum) seminal roots for easy access to the subsoil and the consequences for plant water supply and yield has been investigated by computer simulation. Parameters included were: biopore density and diameter, depth of cultivation and strength of the subsoil — all under a wide range of seasonal weather conditions. The model predicts that biopores add significantly to root penetration at depth, even at a density of 0.1% v/v of small, vertical pores, while 1.5% to 2.0% v/v can ensure maximum root penetration. When the growing season is shorter a larger number of biopores is needed to ensure timely root penetration to depth. With shallow tillage, biopores occur closer to the soil surface, and their importance is increased. Deeper root penetration invariably gives greater water uptake and transpiration, but may have a negative effect on grain yield, especially under the driest climatic conditions. An increase in early water use may result in less soil water being available during the grain-filling period. The effect of biopores on plant transpiration varies from year to year, depending on the amount of rain and its distribution in time, and on the amount of soil water stored at time of sowing.     

Phosphorus fractions in bulk subsoil and its biopore systems

Improving phosphorus (P) accessibility in subsoils could be a key factor for sustainable crop management. This study aims to explain the quantity of different P fractions in subsoil and its biopore systems, and to test the hypothesis that crops with either fibrous (fescue) or tap‐root systems (lucerne and chicory) leave behind a characteristic P pattern in bulk subsoil, biopore linings and the rhizosphere. The crops were cultivated for up to 3 years in a randomized field experiment on a Haplic Luvisol developed from loess. Aqua regia‐extractable P (referred to as total P) and calcium acetate lactate‐extractable P (P_CAL) were assessed at 0–30 (Ap horizon), 30–45 (E/B horizon), 45–75 and 75–105 cm subsoil depths. In addition, sequential P fractionation was performed on different soil compartments between 45 and 75 cm depths. The results showed that total P stocks below the Ap horizon (30–105 cm) amounted to 5.6 t ha^?1, which was twice as large as in the Ap, although the Ap contained larger portions of P_CAL. Both P_CAL and sequential P extractions showed that biopore linings and the rhizosphere at the 45–75 cm depth were enriched, rather than depleted, in P. The content of inorganic P (81–90% of total P) increased in the following order: bulk soil = biopores _{<2 mm} ≤ rhizosphere ≤ biopores _{>2 mm}. Biopores _{>2 mm} and rhizosphere soil were clearly enriched in resin‐ and NaHCO₃‐extractable P_i and P_o fractions. However, we failed to attribute these P distribution patterns to different crops, suggesting that major properties of biopore P originated from relict biopores, rather than being influenced by recent root systems. The stocks of the sum of these P fractions in the bulk subsoil (182 kg ha^?1 at 45–75 cm depth) far exceeded those in the biopores (3.7 kg ha^?1 in biopores _{>2 mm} and 0.2 kg ha^?1 in biopores _{<2 mm}). Hence, these biopores may form attractive locations for root growth into the subsoil but are unlikely to sustain overall plant nutrition.     

Distinct microbial and faunal communities and translocated carbon in Lumbricus terrestris drilospheres

Lumbricus terrestris is a deep-burrowing anecic earthworm that builds permanent, vertical burrows with linings (e.g., drilosphere) that are stable and long-lived microhabitats for bacteria, fungi, micro- and mesofauna. We conducted the first non-culture based field study to assess simultaneously the drilosphere (here sampled as 0–2 mm burrow lining) composition of microbial and micro/mesofaunal communities relative to bulk soil. Our study also included a treatment of surface-applied ¹³C- and ¹⁵N-labeled plant residue to trace the short-term (40 d) translocation of residue C and N into the drilosphere, and potentially the assimilation of residue C into drilosphere microbial phospholipid fatty acids (PLFAs). Total C concentration was 23%, microbial PLFA biomass was 58%, and PLFAs associated with protozoa, nematodes, Collembola and other fauna were 200-to-300% greater in the drilosphere than in nearby bulk soil. Principal components analysis of community PLFAs revealed that distributions of Gram-negative bacteria and actinomycetes and other Gram-positive bacteria were highly variable among drilosphere samples, and that drilosphere communities were distinct from bulk soil communities due to the atypical distribution of PLFA biomarkers for micro- and mesofauna. The degree of microbial PLFA ¹³C enrichment in drilosphere soils receiving ¹³C-labeled residue was highly variable, and only one PLFA, 18:1ω9c, was significantly enriched. In contrast, 11 PLFAs from diverse microbial groups where enriched in response to residue amendment in bulk soil 0–5 cm deep. Among control soils, however, a significant δ¹³C shift between drilosphere and bulk soil at the same depth (5–15 cm) revealed the importance of L. terrestris for translocating perennial ryegrass-derived C into the soil at depth, where we estimated the contribution of the recent grass C (8 years) to be at least 26% of the drilosphere soil C. We conclude that L. terrestris facilitates the translocation of plant C into soil at depth and promotes the maintenance of distinct soil microbial and faunal communities that are unlike those found in the bulk soil.     

Characterizing organic matter of soil aggregate coatings and biopores by Fourier transform infrared spectroscopy

In some soils, aggregate coatings and walls of biopores differ in the content of clay and organic carbon from that of the aggregate interiors or the soil matrix. The composition of the organic matter on aggregates and on the surfaces of biopores is largely unknown. We have compared the composition of organic matter between inner and outer parts of aggregates and between biopore walls and the soil matrix in a loamy arable soil and a sandy forest one. Hot‐water‐ and sodium‐pyrophosphate‐extractable organic matter was analysed by Fourier transform infrared (FT‐IR) spectroscopy. For the sandy forest soil, the FT‐IR spectra showed that organic matter from the walls of root channels contains fewer functional groups with absorption bands at 1740–1710 cm^?1 and 1640–1600 cm^?1 than that from burrow fillings. For the arable soil, the content of these functional groups in hot‐water‐soluble organic matter from the coatings is less than in that from the interiors in the topsoil, and the reverse is so in the subsoil, probably because water‐soluble organic matter containing these functional groups has moved from topsoil to subsoil. The results indicate that root channels in the forest soil have more reactive zones in an otherwise relatively inert sandy matrix, whereas aggregate coatings in the arable subsoil have a greater cation exchange capacity and a greater sorption potential for hydrophobic substances than the aggregate interiors.     

Barley roots are not constrained to large-sized biopores in the subsoil of a deep Haplic Luvisol

Using the profile wall method, we determined the root-length density (RLD) of barley roots growing in large-sized biopores (diameter >2 mm) and in the bulk soil of a Haplic Luvisol down to 200 cm of soil depth. The maximum bulk density in the soil profile (1.52 g?cm^?3) was recorded in the Bt horizon (41–115 cm of soil depth). The proportion of RLD in biopores over the total RLD increased with increasing soil depth down to the 45–75 or 75–105 cm of soil layer but then decreased again in deeper soil. In contrast to earlier investigations, the maximum percentage of RLD in biopores recorded in this study was only 25 %. Root sampling from individually dissected biopores confirmed that roots did not predominantly grow in biopores. Results suggest that roots can use biopores as preferred pathways for growth through rather compact soil layers, whereas they can possibly leave the biopore and re-enter the bulk soil in deeper, less compact layers.     

Effects of short-term conservation management practices on soil organic carbon fractions and microbial community composition under a rice-wheat rotation system

The objective of this study was to investigate the effects of short-term (less than 2 years) conservation managements [no-tillage (NT) and crop residue returning] on top soil (0–5 cm) microbial community composition and soil organic C (SOC) fractions under a rice-wheat rotation at Junchuan town of Hubei Province, China. Treatments were established following a split-plot design of a randomized complete block with tillage practices [conventional tillage (CT) and NT] as the main plot and residue returning level [no residue returning (0) and all residues returned to fields from the preceding crop (S, 2,146 kg C ha^?1)] as the subplots. The four treatments were CT with or without residue returning (CT0 and CTS) and NT with or without residue returning (NT0 and NTS). The abundances of microbial groups [total FLFAs, fungal biomass, bacterial biomass, fungal biomass/bacterial biomass (F/B), monounsaturated fatty acids/saturated fatty acids (MUFA/STFA), and microbial stress] were determined by phospholipid fatty acid (PLFA) analysis of soil. The ratio of MUFA/STFA reflects aeration of soil and greater MUFA/STFA means better aeration condition of soil. Moreover, the microbial stress, the ratio of cy19:0 to 18:1ω7, was regarded as an indicator of physiological or nutritional stress of microbial community. PLFA profiles were dominated by the fatty acids iC15:0 (9.8 %), C16:0 (16.5 %), 10Me17:0 (9.9 %), and Cyc19:0 (8.3 %), together accounting for 44.6 % of the total PLFAs. Compared with CT, NT significantly increased microbial biomass C (MBC) by 20.0 % but did not affect concentrations of total organic C (TOC), dissolved organic C (DOC), easily oxidizable C (EOC), and SOC of aggregates. Residue returning significantly increased MBC by 18.3 % and SOC content of 2–1-mm aggregate by 9.4 %. NT significantly increased total PLFAs by 9.8 % and fungal biomass by 40.8 % but decreased MUFA/STFA by 15.5 %. Residue returning significantly enhanced total PLFAs, bacterial biomass, fungal biomass, F/B, and MUFA/STFA by 31.1, 36.0, 95.9, 42.5, and 58.8 %, respectively, but decreased microbial stress by 45.9 %. Multivariate analysis (redundancy analysis and partial correlation analysis) indicated that SOC of 2–1-mm aggregate was related to changes in the composition of soil microbial groups, suggesting that SOC of 2–1-mm aggregate was sensitive to changes in soil microbial community composition affected by short-term conservation management practices in our study.     

Changes in the fatty acid profiles through the digestive tract of the earthworm Lumbricus terrestris L.

The gut of many soil arthropods contains a complex and mutualistic microbial community that usually assists the host with digestion. The same is probably true for earthworms, but the nature and function of the microbiota inhabiting their gut are virtually unknown. In this paper, we studied the microbial community in the gut content of the earthworm Lumbricus terrestris L. and in the bulk soil by assessing their fatty acid (FA) profiles. Our results indicated that the total FA concentration in the earthworm gut was about two orders of magnitude greater than in bulk soil, with higher concentration of bacteria (up to 500-fold), fungal and metazoan-derived FAs. Several FAs appearing in the gut were not present in bulk soil. PCA analysis revealed that the microbial community in the gut was different from that in the bulk soil, and that significant changes occurred between midgut, hindgut and proctodeum. Cluster analysis of bacterial and fungal-derived FA profiles grouped the bulk soil samples apart from the gut samples, where the hindgut profiles were more closely related to those from the proctodeum than those from the midgut. We showed important changes in the FA concentration and composition occurring at very small spatial scales inside the gut of the earthworm L. terrestris. These results have implications for understanding earthworm digestion, and they suggest that the microbial community in the earthworm gut is not a casual combination of microorganisms already present in the soil. Further study is needed to determine how these gut microbial communities are involved in earthworm digestion processes.     

Temperature and substrate controls on microbial phospholipid fatty acid composition during incubation of grassland soils contrasting in organic matter quality

Soil incubations are often used to investigate soil organic matter (SOM) decomposition and its response to increased temperature, but changes in the activity and community composition of the decomposers have rarely been included. As part of an integrated investigation into the responses of SOM components in laboratory incubations at elevated temperatures, fungal and bacterial phospholipid fatty acids (PLFAs) were measured in two grassland soils contrasting in SOM quality (i.e. SOM composition), and changes in the microbial biomass and community composition were monitored. Whilst easily-degradable SOM and necromass released from soil preparation may have fuelled microbial activity at the start of the incubation, the overall activity and biomass of soil microorganisms were relatively constant during the subsequent one-year soil incubation, as indicated by the abundance of soil PLFAs, microbial respiration rate (r), and metabolic quotient (qCO₂). PLFAs relating to fungi and Gram-negative bacteria declined relative to Gram-positive bacteria in soils incubated at higher temperatures, presumably due to their vulnerability to disturbance and substrate constraints induced by faster exhaustion of available nutrient sources at higher temperatures. A linear correlation was found between incubation temperatures and the microbial stress ratios of cyclopropane PLFA-to-monoenoic precursor (cy17:0/16:1ω7c and cy19:0/18:1ω7c) and monoenoic-to-saturated PLFAs (mono/sat), as a combined effect of temperature and temperature-induced substrate constraints. The microbial PLFA decay patterns and ratios suggest that SOM quality intimately controls microbial responses to global warming.     

Incorporation of urea-derived 13C into microbial communities in four different agriculture soils

The objective of this study was to investigate changes in the composition of the soil microbial community brought about by urea application and differences in the incorporation of urea-derived C into the soil phospholipid fatty acid (PLFA) pool at differing soil pH. We selected four soils which ranged in pH from 3.9 to 7.8. ¹³C-labeled urea was applied at two concentrations 100 and 200 mg N kg^?1 which represents commonly used and high levels of application. Significant hydrolysis of applied urea occurred within 2 h; less than 2 % of urea-C was retained in the soil with one exception, the fluvo-aquic soil at pH 7.8 amended with 200 mg kg^?1 urea-N 3 days after urea application. According to principal component analysis (PCA), the effect of urea and incubation time on microbial community composition was far weaker than differences between the four soils due to their large differences in basic properties; the scores of PC2 were significantly correlated with pH values. The incorporation of ¹³C-urea to PLFAs increased with soil pH; this may be related to increases in the speciation of inorganic C into bicarbonate.¹³C label was primarily incorporated into 16:1ω5c, 16:0, and cy19:0 in red soil, pH 3.9; and into 16:1ω7c, 16:0, and 16:1ω5c in fluvo-aquic soil, pH 7.8. A wider range of PLFAs became labeled in the two paddy soils at pH 5.2 and 6.7. This suggests that the profile of PLFAs labeled from the application of ¹³C-urea may be affected by redox potential.     

Introduced earthworm species exhibited unique patterns of seasonal activity and vertical distribution,and <Emphasis Type="Italic">Lumbricus terrestris</Emphasis> burrows remained usable for at least 7 years in hardwood and pine stands

It is difficult to obtain non-destructive information on the seasonal dynamics of earthworms in northern forest soils. To overcome this, we used a Rhizotron facility to compile 7 years of data on the activity of anecic (Lumbricus terrestris) and endogeic (Aporrectodea caliginosa complex) earthworms in two contrasting soil/plant community types. We hypothesized that L. terrestris burrows would be used for longer than a typical L. terrestris lifetime, and that the distribution and activity pattern of the two earthworm species would respond differently to changes in soil moisture and temperature. For 7 years we recorded earthworm distribution and activity state bi-weekly to a depth of 1.5 m, tracked L. terrestris burrows using images captured annually, and measured soil temperature and moisture. Activity and vertical distribution of earthworms was closely linked to earthworm species and soil temperature in the fall, winter and spring. Lumbricus terrestris typically remained active through the winter, whereas the A. caliginosa complex was more likely to enter an aestivation period. Activity of all earthworms decreased substantially in July and August when soil temperature was at its highest and soil moisture at its lowest for the year. Most L. terrestris burrows were used continuously and moved very little during the 7-year study, likely creating spatiotemporally stable hotspots of soil resources. The different patterns of response of these species to soil temperature and moisture suggests that endogeic earthworms are more likely than anecic earthworms to adjust activity states in response to climate change mediated shifts in soil moisture and temperature.     

Evaluation of suppression of rhizomania disease by earthworm (Lumbricus terrestris L.) and its effects on soil microbial activity in different sugar beet cultivars

The ability of earthworm Lumbricus terrestris L. to suppress the multiplication of Beet necrotic yellow vein virus (BNYVV) transmitted by Polymyxa betae and its effects on soil microbial activity were investigated under controlled conditions. BNYVV-infested and a combination of earthworm with BNYVV-infested soil were compared to non-infested soils for their effects on plant and root weights and virus content of two different sugar beet cultivars by using partially resistant (cv. Leila) and susceptible (cv. Arosa) cultivars to the rhizomania disease. Soil testing with sugar beet baiting plants followed by enzyme-linked immunosorbent assay (ELISA) was used to diagnose virus. The results of the statistical analyses showed that total fresh plant and root weights were negatively correlated with BNYVV infection. Addition of L. terrestris significantly enhanced plant and root weights. The earthworm-added soils had higher microbial activity such as basal soil respiration and dehydrogenase activity. The presence of earthworms in the soil did not statistically suppress BNYVV infection (p < 0.05). Sugar beet production may be enhanced by using resistant cultivars with adding L. terrestris into soil where rhizomania is present.     

Soil biopore estimation: effects of tillage, nitrogen, and photographic resolution

Networks of biopores created by plant and animal activity might accumulate in untilled cropping systems. These would be relatively well connected to the soil surface. The objective of this study was to count biopores after long-term no-till in comparison to recently tilled soil. Biopores were counted and measured to 80 cm depth at 10 cm increments in plots either under no-till wheat production for 1 year or for 17 years, and receiving zero or 130 kg ha⁻¹ N. The measurements were repeated using different photographic methods with increased resolution. The only significant difference between the long and short term no-till was in biopore sizes over 1 mm diameter, where long-term no-till produced from 30 to 100% more biopores, probably caused by increased earthworm activity. Over 99% of biopores measured were less than 1 mm diameter. There was no difference between tillage or N treatments in the number of these smaller biopores at any depth. This means small biopores did not accumulate either above or below the plow layer in an untilled cropping system. Improved resolution in the second set of measurements produced a 100-fold increase in detection of biopores in the 0.3–0.5 mm range. This provides evidence that a substantial portion of biopores are very small and were missed in the first year of this study and perhaps in other studies of this type. It is hypothesized that biopores of 0.05–0.5 mm diameter make up over half of total biopore volume and might have a significant role in movement of water and gases.     

Dynamics of Microbial Community in Japanese Andisol of Apple Orchard Production Systems

Abstract

In this study, two fields of temperate Andisols from high‐input and low‐input (zero‐input) management practices of an apple orchard were selected to assess microbial community dynamics based on environmental variables. Soils from an Ap horizon were sampled in five consecutive months from May to September and assessed for phospholipid fatty acids as a biomarker of soil microbial community, soil hardness, bulk density, porosity, pH, electrical conductivity (EC), organic carbon (C), available nitrogen (N) and phosphorus (P), and exchangeable cations as soil environmental variables. For all sample dates, total phospholipid fatty acids (PLFAs), total bacterial PLFAs, fungal PLFA, mycorrhizal PLFA, PLFA for actinomycetes, and earthworm were higher in low‐input management than high‐input management. Total PLFAs showed a high degree of seasonality, having August maxima and May minima. Significant effect on the relationships among soil environmental variables and microbiological attributes were observed. Soil management practices also showed a remarkable effect on the relationships among microbiological traits, indicating that some mechanism regulated soil microbial dynamics under two soil management practices. Comparatively higher correlations among the microbiological attributes were observed in low‐input management than high‐input management. Irrespective of soil management practices, bacterial and fungal lipid biomarkers were negatively correlated, suggesting that these subsets of fatty acids are contrasting components of the microbial biomass. Bulk density has negative influence on all soil microbial communities except fungi. On the other hand, linoleic acid and organic C were positively correlated, referring to the distribution of soil organic C implying an upper layer of soils. Microbial community composition and structure were greatly affected by sampling date and to a lesser extent by long‐term management practice. In this study, both ecosystems were characterized by a very diverse microbial community.     

Effects of biochar,earthworms, and litter addition on soil microbial activity and abundance in a temperate agricultural soil

Biochar application to arable soils could be effective for soil C sequestration and mitigation of greenhouse gas (GHG) emissions. Soil microorganisms and fauna are the major contributors to GHG emissions from soil, but their interactions with biochar are poorly understood. We investigated the effects of biochar and its interaction with earthworms on soil microbial activity, abundance, and community composition in an incubation experiment with an arable soil with and without N-rich litter addition. After 37 days of incubation, biochar significantly reduced CO₂ (up to 43 %) and N₂O (up to 42 %), as well as NH₄ ⁺-N and NO₃ ^?-N concentrations, compared to the control soils. Concurrently, in the treatments with litter, biochar increased microbial biomass and the soil microbial community composition shifted to higher fungal-to-bacterial ratios. Without litter, all microbial groups were positively affected by biochar × earthworm interactions suggesting better living conditions for soil microorganisms in biochar-containing cast aggregates after the earthworm gut passage. However, assimilation of biochar-C by earthworms was negligible, indicating no direct benefit for the earthworms from biochar uptake. Biochar strongly reduced the metabolic quotient qCO₂ and suppressed the degradation of native SOC, resulting in large negative priming effects (up to 68 %). We conclude that the biochar amendment altered microbial activity, abundance, and community composition, inducing a more efficient microbial community with reduced emissions of CO₂ and N₂O. Earthworms affected soil microorganisms only in the presence of biochar, highlighting the need for further research on the interactions of biochar with soil fauna.     

Response of soil organic matter fractions and composition of microbial community to long-term organic and mineral fertilization

The effects of organic and mineral fertilization on four soil organic matter (SOM) fractions (non-protected, physically protected, chemically protected, and biochemically protected) and microbial community composition were investigated by sampling soil of a 35-year-long fertilization experiment. The SOM fractions were investigated by combined physical and chemical approaches, while microbial community composition was determined by phospholipid fatty acid analysis (PLFA). Organic C (SOC) was primarily distributed within the microaggregate-protected particulate organic matter (iPOM) and the hydrolysable and non-hydrolysable silt-sized (H-Silt, NH-Silt) fractions, which accounted for 11.6–16.9, 23.4–28.9, and 25.4–30.6% of the total SOC content, respectively. The contributions of these “slow” fractions (iPOM, H-Silt, NH-Silt) to the increased SOC were 178–293, 118–209, and 85–109% higher after long-term sole manure or manure in combination with inorganic N fertilization compared with unfertilized soil (control). The combination of manure and mineral fertilizers increased the coarse and fine non-protected C (cPOM and fPOM) contents much more (34.1–60.7%) than did manure alone. PLFAs, bacteria, G (+) bacteria, and actinomycete abundances were the highest in soil with manure, followed by soil treated with manure combined with mineral N. The addition of inorganic and organic fertilization both altered the microbial community composition compared with the control. All SOM fractions contributed to 81.1% of the variance of the PLFAs-related microbial community composition by direct and indirect effects. The change in coarse unprotected particulate organic matter (cPOM) was the major factor affecting soil microbial community composition (p < 0.001). Our study indicates that physical, chemical, and biochemical protection mechanisms are important in maintaining high SOC level after the addition of manure. A close linkage between soil microbial community composition and cPOM suggests that C availability is an important factor for influencing microbial composition after long-term inorganic and organic fertilization.     

Trophic transfer of fatty acids from gut microbiota to the earthworm Lumbricus terrestris L

The diet of earthworms includes soil organic matter, soil microbes and other microfauna, but the relative contribution of these dietary components to earthworm nutrition is not well known. Analysis of fatty acid (FA) profiles can reveal trophic relationships in soil food webs, leading to a better understanding of the energy and nutrient flows from microbiota to earthworms. The objective of this study was to determine the origin of FAs assimilated by the earthworm Lumbricus terrestris L. We analysed the pattern of FAs in: (i) the bulk soil, (ii) soil in the earthworm gut, (iii) the absorptive tissue of the earthworm gut wall, and (iv) the muscular layers of the earthworm body wall. Multivariate analyses performed on the FA profiles suggest that the microbial community in the earthworm gut differs from that in bulk soil. Diverse bacterial and fungal derived FAs, which earthworms cannot synthesize, were found in the earthworm gut wall and body wall, and in the neutral lipids (storage lipids) of the gut wall. The major compounds isolated were 20:4ω6, 20:5ω3 and 18:2ω6, followed by the monoenoic 18:1ω7 and 18:1ω9c, and the saturated 18:0. The microbial FA assemblage in the gut wall resembled the gut soil more than the bulk soil, and the body wall of L. terrestris showed the same microbial derived FA pattern as the gut wall, although at reduced concentrations. We propose the existence of a specific microbial community in the earthworm gut that provides FAs to the earthworm. It appears that L. terrestris may derive more of its energy and nutrients from gut specific microbiota than from microbiota already present in the ingested soil, based on the trophic relationships revealed through FA analysis.     

温度和秸秆质量调节与秸秆分解相关的微生物磷脂脂肪酸（PLFA）组成

Variations in temperature and moisture play an important role in soil organic matter (SOM) decomposition. However, relationships between changes in microbial community composition induced by increasing temperature and SOM decomposition are still unclear. The present study was conducted to investigate the effects of temperature and moisture levels on soil respiration and microbial communities involved in straw decomposition and elucidate the impact of microbial communities on straw mass loss. A 120-d litterbag experiment was conducted using wheat and maize straw at three levels of soil moisture (40%, 70%, and 90% of water-holding capacity) and temperature (15, 25, and 35°C). The microbial communities were then assessed by phospholipid fatty acid (PLFA) analysis. With the exception of fungal PLFAs in maize straw at day 120, the PLFAs indicative of Gram-negative bacteria and fungi decreased with increasing temperatures. Temperature and straw C/N ratio significantly affected the microbial PLFA composition at the early stage, while soil microbial biomass carbon (C) had a stronger effect than straw C/N ratio at the later stage. Soil moisture levels exhibited no significant effect on microbial PLFA composition. Total PLFAs significantly influenced straw mass loss at the early stage of decomposition, but not at the later stage. In addition, the ratio of Gram-negative and Gram-positive bacterial PLFAs was negatively correlated with the straw mass loss. These results indicated that shifts in microbial PLFA composition induced by temperature, straw quality, and microbial C sources could lead to changes in straw decomposition.