Genetic interpretations of the effects of bulk breeding on four populations of beans (Phaseolus vulgaris L.)

Summary The effects of bulk breeding on yield and its components in two high-yeilding and two low-yielding bean populations when grown at crop densities are interpreted in terms of gene action and selection. There was considerable additive variation in the crosses, dominance effects were variable but tended to be negative. The results were compared with results obtained at low density by another worker with the same populations, and this showed that interpretations of gene action in hybrid vigour depend on the test environment used. The interpretations were also compared with plant breeding interpretations made on the same material (Hamblin, 1977), and it was found that a single pattern of response to natural selection, in plant breeding terms, may be explained by more than one genetic interpretation and, conversely, a single genetic interpretation may result in different patterns of response in plant breeding terms. The value of composite crosses in plant breeding are discussed and it is concluded that there is a greater chance of producing improved lines from a large number of simple crosses than from a smaller number of composite crosses.     

Comparison of selection procedures in breeding for seed yield in segregating sesame populations

Summary Four hundred sesame (Sesamum indicum L.) lines selected by five methods from five crosses were tested for yield and other agronomic characters in F₆ and F₇. More high yielding lines were isolated by the bulk method and in the cross involving two local cultivars when two seasons means and performance in each individual season were considered. The cross involving two exotic cultivars did not produce a single line superior to local recommended variety. The 80 highest yielding lines recorded a 10.8% increase in yield compared to the mean of 400 lines. Thirty five lines were among the top 20% both seasons with a 13.2% increase in yield. Highly significant seasonal and population effects were recorded. There were no significant differences among the methods of selection although the yield differences among lines were highly significant. Interactions of seasons × populations, seasons × methods, populations × methods and seasons × populations × methods were highly significant. The results indicate that simple and less expensive bulk method may be used with equal success as the pedigree, single seed descent or early generation testing methods when selecting for yield in segregating sesame populations. The importance of inclusion of a high yielding, locally adapted cultivar in the crossing programmes for yield breeding of sesame has also been revealed.Abbreviations BM Bulk method - EGT Early generation testing - G × E Genotype × environment - MSS Modified single seed descent - PM Pedigree method - SSD Single seed descent     

Molecular marker variability for southern root-knot nematode resistance in sweetpotato

Summary As organic farming refrains from high and chemical inputs it needs varieties better adapted to organic conditions to improve the yield stability and quality of crops. In order to make genebank accessions more accessible for the utilisation in organic breeding programmes, a participatory research project with farmers was carried out in 2002 and 2003. From the Dutch genebank collection 37 onion accessions, divided into five different groups (according to their market use), were selected and planted at a commercial organic farm. Farmer participation in characterisation and evaluation of the material resulted in including additional plant traits for genebank characterisation as well as new selection criteria for breeding. It also provided researchers insight into how organic farmers evaluate and value certain plant traits. Variation for important properties was found within and between the five groups. To establish base populations, the farmers, in collaboration with the researchers, selected the best genotypes within the five groups of onion accessions. The new base populations may be exploited in order to achieve better-adapted material for organic farming systems.     

Cooperative breeding for the northern marginal areas

Summary A joint breeding project for the northern areas of Scandinavia and Iceland was initiated in 1981 under the auspices of the Nordic Council of Ministers. Initially, efforts concentrated on cooperative trials in which both early and more advanced breeding material was tested at a number of experimental stations in the northern regions. This was followed by a joint breeding programme for timothy with the primary aim of developing varieties that possess broad adaptation to a range of Nordic climates and managements and can be grown throughout the northernmost part of Scandinavia. Each of the five national breeding stations originally provided 12 timothy genotypes for the project giving a total of 60 genotypes. The parental genotypes were compared as spaced plants at all five stations and their polycross progeny were grown under sward conditions at the same sites. On the basis of results obtained from these field trials parent clones have been selected and intercrossed to form synthetic populations.     

A comparison between single plant plots and five plant plots for the initial selection stage of a potato breeding programme

Summary The efficiency of single plant selection in the initial selection stage of a potato breeding programme was examined. A random sample of potato clones was grown in single plant plots and also in tworeplicates of five plant plots. After harvest, each plot was visually assessed by three potato breeders; total tuber weight and number of tubers per plant were also recorded, from which mean tuber weight was calculated. The error variances of the single plant plots were found to be significantly greater than from the five plant plots for total tuber weight, mean tuber weight and number of tubers per plant, but not significantly different for breeders' preference. Coefficients of correlation between single and five plants plots were significantly greater than zero for all traits examined, but they were lower than the corresponding correlations between the two replicates of five plant plots. Although a random sample of clones was examined, each clone had been assessed for breeders' preference the previous year. When the clones were grouped according to the previous years preference scores, it was found that the correlation coefficients between single and five plant plots for breeders' preference were inversely related, in magnitude, to the mean preference score of each group. It was concluded that single plant selection was generally ineffective, particularly when only the better clones, from the previous years assessment, are examined.     

Frequencies of Vertical Resistances and Virulences in the Rye-Powdery Mildew Pathosystem*

Nine populations of rye (Secale cereale L.; the cultivars ‘Kustro’, ‘Danko’ and ‘Carokurz’. a breeding population PA 14/75 and five Iranian primitive ryes) were tested with three or two pathotypes of powder)’ mildew (Erysiphe graminis DC. f. sp. secalis Marchal) to determine the frequencies of vertical resistances. Similarly, three populations of powder)’ mildew isolated from the above eultivars were tested with two rye pathodemes to estimate the frequencies of vertical virulences. Tests were carried out on leaf segments cultivated in vitro. To explain the pattern of the host-parasite interaction, a model with at least four resistance and virulence genes was required. In the rye populations the genotypes of most plants could be determined unambiguously whereas in the powdery mildew populations no unique classification of one-postule isolates was possible due to the limited number of rye differentials. Both the host and the pathogen populations were polymorphic for resistance and virulence, respectively. In all lye populations except PA 14/75 the resistance frequencies were low. In the mildew populations the virulence frequencies were high and complex races occurred rather frequently. The virulence frequencies were related to the resistance frequencies of the respective host population. Results were compared with mathematical host-parasite models accounting for gene-for-gene interaction and balancing natural selection. Observations agree well with theory.     

Genetic diversity among populations and breeding lines from recurrent selection in Brassica napus as revealed by RAPD markers

Recurrent selection facilitated by dominant male sterility has been conducted to broaden the genetic basis for cultivar development in Brassica napus. This study aimed to evaluate the genetic variation in four base populations (C0‐C3) and breeding lines from two of the populations produced during recurrent selection by random amplified polymorphic DNA (Rapd) markers. Genetic variation in four populations declined gradually with the advance of selection cycles as measured by expected genetic heterozygosity (from 0.2058 in C0 to 0.1536 in C3) but the decline was not statistically significant. When compared with the average genetic distances for 21 germplasm collections with wide geographical and genetic origins (0.4712) and seven breeding lines from pedigree selection (0.2059), seven breeding lines selected from the C1 population and 11 from the C3 population had a larger average genetic distance (0.5339 and 0.5486, respectively). Clustering analysis indicated that the lines from recurrent selection had a much lower genetic similarity than lines from pedigree selection. Our results suggest that base populations derived from recurrent selection could provide a wider genetic variation for selection of breeding lines with more broad genetic bases.     

Variability of Yield Characters and Selection in Solanum ladniatum Ait.

The steroid bearing medicinal plant, S. laciniatum, was bred for high solasodine yield for commercial cultivation in Thailand. Starting materials for breeding consisted of seven populations of different origin. Variability among these populations was examined using an unselected control population cultivated over three years. Additive and dominance variance were estimated from a polycross and diallel mating design. Significant genotypic variability was found for solasodine concentration, height of the plants, and total shoot length, promising successful selection for the most important yield characters. Additive variance and heritability in the narrow sense were low for all yield characters, due to previous selection of the parental plants used for the polycross and diallel mating. No dominance effects could be found for any of the characters. In conclusion, breeding S. laciniatum for quantitative yield characters by selection will be superior to hybrid breeding. As a result of selection, significant increases in the most important yield characters in the offspring of selected populations were obtained.     

Comparison of pedigree selection and single seed descent for oil yield in linseed (Linum usitatissimum L.)

Summary Four populations of linseed derived from five parents were advanced from the F₂ to the F₆ generation by SSD and to the F₅ by pedigree selection. These populations were used to compare the efficiency of the two methods in order to provide superior genotypes with respect to grain yield and oil content, i.e. oil yield. The results showed minimum differences between pedigree and SSD lines for grain yield, where in only one cross the SSD lines were significantly superior to the pedigree lines. Since pedigree selection was carried out for both, seed yield and oil content, a positive response to selection was expected. However, early selection for yield, a character with low heritability, was not successful. On the contrary, significant differences for oil content were detected between the two groups of lines in three of the four crosses studied. In these cases the pedigree lines were superior to the SSD lines. These results demonstrate that strict selection in early generations for oil content, a character with comparatively high heritability, is feasible and successful in linseed. However, selection for seed yield should be postponed to later inbred generations. Consequently, in breeding for maximum oil yield of linseed a two-step selection procedure is recommended.Abbreviations PS pedigree selection - SSD single seed descent - TGW thousand grain weight     

A comparison of traditional and haploid-derived breeding populations of oilseed rape (Brassica napus L.) for fatty acid composition of the seed oil

Summary Microspore embryogenesis technology allows plant breeders to efficiently generate homozygous micros-pore-derived breeding populations of oilseed rape (Brassica napus L.) without traditional generations of inbreeding. This study was conducted to compare the frequency distribution of microspore-derived population and single seed descent populations with respect to fatty acids of seed oil. Both microspore-derived populations and single seed descent populations were produced from each of three crosses made between selected parents containing contrasting amount of erucic, oleic, linoleic and linolenic acids. The fatty acid content of F₃ plants derived lines (F₅ seed) developed by single seed descent was compared to that of microspore-derived populations. The means, ranges and distribution pattern of seed fatty acid contents were similar in both populations for each fatty acid studied, although a few heterozygous lines were observed in the single seed descent populations. The results indicated that microspore-derived population form random, homozygous F₁ plant derived gametic arrays for all fatty acids evaluated. Selection for altered fatty acid composition in microspore-derived and single seed descent homozygous populations should be equally efficient, in the absence of linkage of traits investigated.     

两个玉米回交一代群体中opaque2基因单侧连锁累赘的SSR分析

为了在回交一代既能较好地消除靶基因的遗传连锁累赘,又能在进行背景选择的基础上选择到轮回亲本遗传背景回复率较高的单株,本研究构建了单株数分别为1 416和1 627的SCBC₁F₁和HCBC₁F₁两个不同遗传背景的回交群体。结合玉米叶片DNA大量、快速提取法,使用5个与opaque2（o2）基因连锁并已定位的SSR标记,在SCBC₁F₁与HCBC₁F₁群体中,对o2基因单侧的连锁累赘进行SSR分析,并与Ribaut（2002）的计算机模拟结果进行比较,结果表明,本研究获得的结果优于相应的计算机模拟结果。并对分子标记辅助选择体系在玉米回交育种中应用的若干理论问题进行了讨论,认为在实际应用MAS程序中,不仅要重点考虑最终决选的单株数（N_i）,而且还应该考虑到实际有足够后代的中选单株数（N_j）。另外,结合预期要消除连锁累赘的图距,制备足够大的BC₁F₁群体是十分必要的。     

转基因棉花抗虫基因的分子辅助选择

为提高棉花新品种选育过程中外源抗虫基因选择的准确性,以常规非转基因抗虫棉花品种、单价转基因抗虫棉品种、双价转基因抗虫棉品种为试验材料,选择能扩增Bt基因通用引物和棉花内源基因SAD1的引物,建立了抗虫基因的PCR检测方法。利用该方法对常规非转基因抗虫棉品系和转基因棉花品系进行了检测。结果表明,该方法可明确区分常规非转基因抗虫棉品系和转基因棉花品系;对高代育种品系进行检测表明40%转基因品系中存在单株不能扩增出预期的特异片段,而在非转基因系冈197中存在8.0%的单株扩增出预期的特异片段。该方法可应用于棉花新品种选育过程中对外源抗虫基因的检测,提高了选择的准确性和目的性。     

Recurrent selection for grain yield in early generations of two barley populations

Summary Two spring barley composites, one based on eight West-European two-rowed cultivars (A) and one, the predominantly six-rowed composite XXI, based on several thousands of barley cultivars (B), formed the starting point of a recurrent selection procedure. The aim was to study whether recurrent selection in early generations is an effective procedure to improve barley populations for agronomic characteristics, especially grain yield.After two cycles of recurrent selection in the two populations A and B separately, and consisting of single plant selection followed by line selection, one cycle of recurrent selection was applied to the population produced by intercrossing the selected A and selected B lines.The selection for grain yield in the F2 single plant stages and the F3 line stages was carried out by selecting the plants or lines with the largest mean head weight provided that they did not tiller too poorly. Also some selection was applied against extremes in heading date and against tall plants.After two cycles of recurrent selection the grain yield, tested over two years and two locations, had increased with 16.5% in population A and with 27.0% in population B. Both the single plant selection and the line selection had contributed significantly to this response.The population created by crossing the selected A with the selected B lines showed a significant reduction in yield compared to the mean yield of the A and B lines constituting this population. Single plant selection, followed by line selection did raise the yield level 5.7% above that of the mean of these A and B lines. Several lines produced from this intercross combined an excellent grain yield with outstanding resistance to barley leaf rust and powdery mildew. However, these lines like the entire intercross population suffered from susceptibility to lodging, a characteristic derived from population B.In five experimental situations mixtures of genotypes were compared with the mean of the monocultures of the constituting genotypes. The mixture yielded always more, the average mixture effect being 4.5%.     

Genetic diversity, hybrid performance, and combining ability for yield in Musa germplasm

Genome size variation occurs within and across generations in Musa spp., which reduces the predictive accuracy of parental performance on progeny value for yield and other traits with complex inheritance. Parental selection through progeny testing of prospective parents is required to achieve further genetic gains. This was carried out in this study, using a factorial mating design involving five 4x females and five 2x males. Genetic differences among offspring families were essentially due to differences in additive effects of the parents. Thus, little recombinative heterosis can be expected upon 4x-2x cross-breeding, and breeding strategies should target the development of 4x and 2x cultivars by accumulation of favorable alleles through recurrent selection within each ploidy pool. Offspring yield was positively correlated with parental GCAs but not with mid-parent values. Hybrid performance was also associated but not significantly correlated with genetic similarity indices based on both pedigree and molecular data. This study further suggests that current genetic models may not be adequate for populations with intergeneration genome size polymorphism. This revised version was published online in July 2006 with corrections to the Cover Date.     

Combining ability analysis and correlation between breeding values in true potato seed

True potato seed (TPS) requires the selection of appropriate parents for developing hybrid offspring. Parents for routine crossing schemes need to be selected according to their combining ability. Hierarchical and factorial mating designs provide a mean values to assess the general combining ability (GCA) of clones included in crossing schemes. Furthermore, specific combining ability (SCA) may be investigated using the factorial mating design. The aim of this research was to determine the combining ability of clones included in early and intermediate TPS breeding populations developed by the Centro Internacional de la Papa (CIP). Likewise, correlations between breeding values (or additive genetic correlation, p_A) were calculated. Two hierarchical mating designs (in both the early and intermediate populations) and one factorial mating design (in the intermediate population) were evaluated in two contrasting Peruvian locations (La Molina ‐ coastal desert, and San Ramon, warm humid tropics). Plant and tuber characteristics were recorded in these experiments. Significant GCA was observed for tuber yield in all experiments. The male's p_A between plant vigour after transplanting and tuber yield was significant, thereby suggesting that offspring with early vigorous growth are high yielding. Plant vigour was also correlated with tuber set, but only among the breeding value of female parents, which suggests that high tuber yield could be achieved because offspring with early, vigorous growth have many tubers. High tuber yielding hybrids can be obtained by choosing parents with significant GCA, whose tuber yield can also be further enhanced if the crosses have a significant SCA.     

Simultaneous improvement in cold tolerance and yield of temperate japonica rice (Oryza sativa L.) by introgression breeding

To combine high yield and improved cold tolerance (CT) in a japonica rice variety, ‘Chaoyou1’ (CY1), 324 BC₂F₅ introgression lines (ILs) selected for CT from 11 CY1 BC₂F₄ populations were evaluated in replicated experiments for their CT at the reproductive and seedling stages. A mean realized heritability of 0.747 was achieved in this study for CT. Evaluation of 116 ILs from five BC populations in replicated experiments under stress and normal conditions identified 18 promising ILs that had greatly improved CT and yield compared with CY1. Detailed comparisons between the ILs and CY1 for CT and yield‐related traits under stress and non‐stress conditions provided useful information and better understanding of important issues such as donor selection, selection efficiency and associated changes in non‐target traits in the BC breeding process. The large numbers of CT ILs developed provide useful materials for genetic, physiological and molecular dissection of CT and yield traits using DNA markers and ‐omic tools, and as parents for further improving these traits by designed QTL pyramiding.     

人工合成六倍体小麦在黄淮麦区育种中的利用性评价

为了解人工合成六倍体小麦（synthetic hexaploid wheat,SHW）在黄淮麦区育种改良中的应用价值,利用从国际玉米小麦改良中心引进的5份SHW与普通小麦驻麦305进行杂交、回交,对亲本及BC₂群体的主要农艺性状、产量相关指标和籽粒品质进行调查分析。结果表明,与普通小麦相比,SHW的株高、小穗数、穗粒数、收获系数和千粒重等是其不利性状,但具有较多的分蘖。SHW的纤维含量、面筋含量、蛋白含量和硬度都比驻麦305高（PAAAAA0.05）。BC₂的收获系数较SHW显著提升,其产量虽然比SHW有了较大幅度提升,但仍显著低于普通小麦。BC₂的蛋白质和面筋含量相对于普通小麦亲本显著提升,其中仅2018-2019年的BC₂-SHW1和BC₂-SHW2群体未达显著水平。这表明5份SHW可作为重要的品质改良资源应用于小麦育种中。     

Response to divergent selection for ease of particle size reduction of dried leaves of smooth bromegrass ( Bromus inermis Leyss) and correlated effects on nutritive value indicators and plant fitness

The rate at which forage can be broken down and cleared from the rumen is a major constraint on voluntary intake by ruminants. Responsiveness to selection has been demonstrated for physical characters possibly related to the ease of breakdown of forage grasses and is a prerequisite for the exploitation of these characters in a breeding program. The objective of this study was to evaluate at two locations the response to one cycle of divergent selection for the ease of breakdown, or particle size reduction index (PSRI), of dried leaf blades in four populations of smooth bromegrass (Bromus inermis Leyss.) grown as spaced plants and the correlated response in neutral detergent fibre (NDF), in vitro dry matter digestibility (IVDMD) and on seedling performance and second year spread as indicators of plant fitness. Divergent selection for PSRI resulted in significant differences between high and low groups in all populations. The contrast for asymmetry of response was not significant, but response tended to be higher in the downwards direction relative to an unselected group. Realised heritabilities ranged from 10–21% when the unselected group was used to represent the parental generation. In the most responsive population, WB19e, seedling growth was poorer at both sites and seedling mortality higher at one site in plants selected for increased PSRI. Selection for PSRI had no effect on IVDMD but there were closely correlated changes in NDF (r = –0.73 across populations, p<0.01). However, comparisons between populations suggested that differences in PSRI independent of NDF also existed. PSRI can be exploited in a breeding program if gains in forage intake by ruminants, independent of changes in NDF, are demonstrated. This revised version was published online in July 2006 with corrections to the Cover Date.     

Marker-assisted selection efficiency in multiple connected populations: a simulation study based on the results of a QTL detection experiment in maize

Many studies already investigated marker-assisted selection (MAS) efficiency but mainly in biparental populations. Connected multiparental populations address a broader diversity and confer a gain of power for QTL detection which must be beneficial for MAS. Our objective was to compare multiparental connected designs to biparental populations taken separately for MAS and phenotypic selection. We first detected QTL for flowering time and grain yield in an experimental maize design involving four parental inbred lines crossed to produce six different biparental populations and confirmed the advantage of multiparental connected designs over biparental populations for QTL detection. Based on these results we performed stochastic simulations to evaluate the expected efficiency of four generations of MAS and phenotypic selection. Different parameters were considered: trait heritability, genetic architecture and whether QTL were assumed to be known or have to be detected. Genetic gains were higher in the multiparental design than on average over the biparental populations considered separately, especially when favourable alleles were equally distributed among parental lines. When QTL detection was included in the simulation process, we found that type I error risk considered for declaring QTL as significant should be adapted to the design. Type I error risks leading to the best response were higher for the biparental populations than for the multiparental design. Besides addressing a broader diversity, multiparental designs increase the power of QTL detection, which reinforces their superiority over biparental designs for MAS. Application of MAS to multiparental designs therefore appears promising to accelerate genetic gain in plant breeding programs.     

Selection for yield in early generations of self-fertilizing crops

Summary If a breeder is to apply selection to a cross-population of a self-fertilizing crop and wishes to maximize his chances of finding a productive genotype, he will have to introduce yield tests in the F₃ lines. Should he not do so because of his intention to work on many populations simultaneously, his tests would be considerably less accurate and the finding of a favourable combination more or less a matter of mere chance.Bulk breeding will result in genetic drift or numbers of plants too large to manage, or in a combination of both.Application of the Single Seed Descent for quantitative characteristics causes such a genetic drift, that the method is not to be recommended.Multiple crosses (double-crosses) to improve quantitative characteristics require populations of a size, that cannot be realized and/or selected. This type of crosses is more suited for cases in which qualitative characteristics form the breeding goals and when it is impossible to obtain the favourable combination using only two varieties.Genic recessive male sterility may be a means to raise large progenies. In the F₃ it confuses the issue of yield of fruits or seeds, which is highly vulnerable in any case. In the F₂ its significance for finding the proper recombinant is very low.