结球甘蓝NBS-LRR类R基因同源序列的分离

 根据大多数抗病基因编码蛋白质的核苷酸结合区(NBS)和富含亮氨酸重复序列(LRR)保守区域的特点,设计PCR特异简并引物,从抗TuMV的结球甘蓝材料84075中,扩增出513 bp的DNA片段,经克隆、测序后,得到4个含有NBS-LRR保守区域的R基因同源序列,分别命名为:Bor1、Bor2、Bor3和Bor4,同源性比较分析表明,它们与已克隆的抗病基因或抗病基因片段有不同程度的同源性。以Bor1为探针,对84075进行Southern blot和RFLP分析的结果表明,Bor1以多拷贝形式存在。     

甘薯中NBS-LRR类抗病基因同源序列的克隆及序列分析

以高抗根腐病的“徐薯18”总DNA为模板进行PCR扩增,获得其抗病基因同源序列RGAs,对其氨基酸序列进行聚类分析和同源性比较分析,为进一步在甘薯中克隆R基因奠定基础。     

小麦NBS-LRR类抗病基因同源序列的分离与鉴定

【目的】拟利用同源序列法分离小麦抗病基因同源片段。【方法】根据已克隆植物抗病（R）基因NBS-LRR保守区段设计两对引物，采用RT-PCR方法对小麦抗叶锈病近等基因系材料TcLr35 的RNA进行扩增。【结果】 获得了3个通读的小麦抗病基因NBS-LRR类抗病基因同源片段PS13-1、PS13-2和S2A2，长度分别为239bp、289bp和539bp，编码78、84和177个氨基酸。核苷酸比较分析表明，PS13-1和PS13-2与已克隆小麦抗白粉病基因PM3b同源性为91%；S2A2与大麦一个来源于mRNA的同源片段同源性为91%；经BLASTp比较，3个片段均含有NB-ARC保守结构域，与已知抗病基因I2C-1，L6，RPS2等相应区域相一致，具有抗病基因NBS特征结构域（P环、激酶2a等）。Northern杂交分析表明，3个同源片段在小麦叶片中为低丰度组成型表达。【结论】本研究在TcLr35小麦中成功获得了抗病基因同源序列，为最终克隆小麦抗叶锈病基因奠定了基础。     

基于NBS-LRR类R基因保守结构域克隆瓠瓜抗病基因同源序列

【目的】分离鉴定瓠瓜Lagenaria siceraria抗病种质的抗病基因同源序列(Resistance gene analogs,RGAs),为瓠瓜功能性抗病基因的克隆及分子标记辅助育种奠定基础.【方法】根据已知核苷酸结合位点和富亮氨酸重复(Nucleotide binding site and leucine rich repeat,NBS-LRR)类抗病基因保守区设计简并引物,从"大籽瓠"抗性材料基因组DNA中分离抗病基因同源序列,并利用生物信息学软件进行长度变异、保守结构域、同源比对与系统进化分析.【结果和结论】基于同源克隆策略,获得23条瓠瓜NBS抗病同源序列,命名为HNB1~HNB23,Gen Bank登录号为KJ908192~KJ908214.序列分析及同源比对结果表明,这些RGAs长度变异在242~261 nt之间,18条序列具有连续开放阅读框(Open reading frame,ORF),推导氨基酸序列具有P-loop、Kinase-2a典型NBS类R基因保守结构域;核苷酸序列相似性为41.5%~98.8%,氨基酸序列相似性为21.5%~100.0%;利用NCBI Blast同源搜索发现,与其他植物尤其是冬瓜、黄瓜、葫芦及丝瓜的已知R基因具有40%~100%相似性;氨基酸序列聚类分析将其分为5个组;同源进化分析表明,23条瓠瓜RGAs均为non-TIR-NBS-LRR类R基因,与推导氨基酸序列多重比较结果一致.     

黑麦属NBS-LRR类抗病基因同源序列的分离与鉴定

根据已知植物抗病基因(resistance gene,Rgene)编码的蛋白质NBS-LRR保守结构设计了10对特异简并引物,对5份黑麦材料的基因组DNA进行抗病基因同源序列克隆,共获得45条抗病基因同源序列(resistance geneanalogs,RGAs)。同源性比较发现,RGAs序列之间的核苷酸相似性是41.9%~99.6%,其中16条具有连续开放阅读框(ORFs)。同时,利用MEGA 3.1将这16条序列与4个已知R基因进行聚类分析,发现有13条序列与RPM1亲缘关系近,2条与Pm3a亲缘关系近。本研究在黑麦中获得的RGAs既可用于筛选黑麦的抗病候选基因,同时也可以作为分子标记,用于作物分子辅助选择育种,且对进一步研究黑麦中NBS-LRR类R基因的起源和遗传进化提供参考和依据。     

辣椒NBS-LRR类型抗病基因同源序列的克隆及分析

为研究辣椒NBS-LRR类抗病基因的结构和功能特点,运用前人根据NBS-LRR类抗病基因保守结构域(P-Loop和GLPL)设计的简并引物,以辣椒PBC631B的基因组DNA为模板进行PCR扩增,共获得17个具有完整开放阅读框的辣椒抗病基因同源序列(CaRGA01～CaRGA17)。多重序列比对显示这些序列都含有NBS-LRR类基因的6个保守结构域(P-loop、RNBS-A-nonTIR或RNBS-A-TIR、Kinase-2、RNBS-B、RNBS-C和GLPL)。与已知6个抗病基因(Gpa2、L6、M、N、Prf和RPM1)构建系统进化树,发现这17个序列被分为TIR-NBS-LRR和nonTIR-NBS-LRR2组,进一步划分为4个亚组(CaRGAⅠ～CaRGAⅣ)。其中,CaRGA01和CaRGA13分别与来自番茄Solanum lycop-ersicum抗细菌性斑点病基因Bs4和番茄Solanum sp.VFNT抗线虫基因Mi-1.4相似性最高,分别为90%和91%,推测这2个序列可能是相关抗病基因的一部分或与相关抗病基因属于同一家族。这些结果将为研究辣椒抗病相关基因提供理论依据。     

晚熟温州蜜柑NBS-LRR类抗病基因同源序列的克隆及分析

为加深对柑橘黄龙病抗性机理的了解和为黄龙病抗性基因的克隆提供依据,根据已知植物抗病基因NBS-LRR保守结构域设计简并引物,以柑橘黄龙病抗性品种"晚熟温州蜜柑"为供试材料,对其基因组DNA进行PCR扩增、克隆和序列测定,结果共获得17条抗病基因同源序列(resistance gene analogs,RGAs),其在NCBI中的登录号为KJ019189~KJ019199,KR815564~KR815569。序列分析表明,这17个RGAs与甜橙、柚等柑橘属中推测的一些抗病蛋白基因或其他相关蛋白基因具有显著高的同源性。其中一些RGAs与拟南芥抗霜霉病RPP13基因、柑橘抗衰退病毒基因Ctv或烟草抗TMV基因N具有51.7%~79.0%的氨基酸序列同源性。依据论文结果,笔者认为,晚熟温州蜜柑中存在较丰富的NBS-LRR类抗病基因,但具体哪些病基因与抗黄龙病相关尚需进一步研究。     

中国野生刺葡萄抗白腐病NBS-LRR类抗病基因 同源序列的分离与鉴定

【目的】通过同源克隆法从刺葡萄‘高山2号’叶片中得到抗白腐病基因的同源片段,为筛选葡萄抗白腐病基因奠定基础。【方法】根据已知植物抗病基因NBS-LRR保守区设计简并引物,从高抗葡萄白腐病刺葡萄‘高山2号’的基因组DNA与cDNA上得到抗病基因同源片段(RGAs),并对其表达分析进行检测。【结果】从刺葡萄‘高山2号’上获得了10个NBS-LRR类抗病基因同源片段,10条葡萄RGAs间在氨基酸水平上的同源性表现出丰富的多态性,进一步分析发现,在10条葡萄RGAs中,4个推测所属基因为non-TIR-NBS-LRR类抗病基因,6个所属基因为TIR-NBS-LRR类抗病基因。定量PCR分析表明,NB7基因受到白腐菌的诱导,而且NB7基因在刺葡萄叶片中为低丰度表达,NBS6基因受到白腐菌的诱导后为下调表达。【结论】在刺葡萄上成功获得了抗病基因同源序列,通过荧光定量PCR分析发现,NB7基因与NBS6基因都受到白腐菌的诱导表达,为最终克隆得到葡萄抗白腐病基因奠定基础。     

甘薯中NBS-LRR类抗病基因同源序列的克隆及序列分析

根据已知的NBS-LRR类抗病基因蛋白质的保守序列设计简并引物,用以扩增甘薯基因组中的抗病基因同源序列,获得一条大小约500 bp的扩增片段,克隆测序后得到20个NBS-LRR类抗病基因同源片段RGAS。其推导的氨基酸序列均具有P-loop、Kinase-2a和Kinase-3a及GLPL区等几个保守区,并且可分为TIR-NBS-LRR和non-TIR-NBS-LRR两个亚类。其中10个TIR亚类RGAS与已克隆的N、L6、M等抗病基因相应区段的氨基酸序列的同源性为21%-44%,而10个non-TIR亚类RGAS与已克隆的Prf、RPM1、RPS2等抗病基因相应区段的氨基酸序列的同源性为15%-46%。这些抗病基因同源片段(RGA)可做为分子标记筛选甘薯的抗病候选基因。     

香蕉NBS-LRR类抗病基因同源序列的克隆与分析

根据已知植物抗病基因的保守区域设计引物.从香蕉基因组DNA扩增出一条与植物抗病基因同源的序列,命名为BRGAl,该同源片段含有典型的NBS.LRR类抗病基因所拥有的保守性结构P-loop、KJnage.2a、Kinase.3a和疏水结构域HD,它与部分已知NBS-LRR类抗病基因的氨基酸序列同源性为23.8%～42.7%.Northern杂交表明BRGAl在香蕉中受水杨酸调控,属诱导型表达.     

芝麻NBS - LRR类抗病基因同源序列的分离与分析

分离和分析芝麻抗、感茎点枯病材料的抗病基因同源序列(resistance gene analogs,RGAs),可以为芝麻抗茎点枯病相关基因的克隆奠定基础.根据已知植物抗病基因的NBS - LRR类保守结构域,合成了1对简并引物和2对特异引物,对6个抗茎点枯病芝麻品种中的抗病基因进行扩增,结果得到11条抗病基因同源序列...     

Isolation and Characterization of NBS-LRR Class Resistance Homologous Gene from Wheat

One resistance gene analog fragment named RGA-CIN14 was isolated from TcLr19 wheat,which contains kinase-2,kinase-3a,and the GLPL motif of the NBS-spanning region,using degenerated primers according to the nucleotide binding site (NBS) conserved domain.Based on the RGA-CIN14,a full-length cDNA,CIN14,which was 2 987 bp encoding 880 amino acids,was obtained by using the method of the rapid amplification cDNA ends (RACE).Bioinformatics analysis showed that the deduced amino acids of CIN14 protein consisted of a NB-ARC conserved domain and many leucine-rich repeats (LRR) domains.The phylogenetic tree analysis indicated a considerable identity of the protein encoded by CIN14 with that of wheat leaf rust resistance gene Lr1,but a lower similarity with Lr21.The expression profile of the CIN14 gene detected by semi-quantitative RT-PCR showed that the CIN14 gene was not induced by Puccinia triticina and it was a constitutive gene with low abundance in the wheat leaf tissue.The resistance homology sequence was successfully obtained,which provides the shortcut for cloning of the resistance gene in TcLrl9 wheat.     

小麦NBS-LRR类抗病基因类似片段分离和定位

【目的】利用同源序列法分离小麦NBS-LRR类抗病基因类似片段,并验证其与小麦抗条锈病基因Yr26之间的关系。【方法】根据已克隆R（抗病）基因的保守结构域（NBS-LRR）设计简并引物,采用巢式PCR（Nested PCR）技术对小麦Yr26近等基因系材料Nan137的基因组DNA进行扩增;同时利用中国春缺失系对获得的抗病基因类似片段进行染色体定位分析,利用Yr26载体品种92R137和感病品种Avcoet S（AvS）创制的F2:3后代群体验证获得的片段与小麦抗条锈病基因Yr26的关系。【结果】通过巢式PCR方法,获得了4个通读的小麦抗病基因NBS-LRR 类抗病基因同源片段R105、R181、R326和R405,长度分别为369、589、528、618 bp;这4个片段均具有典型的NBS-LRR类的保守结构域,其核苷酸相似性为24.35%—38.36%。中国春缺失系定位结果显示片段R405被定位于Yr26所在的小麦缺失系C-1BL-6-0.32区段内,同时通过含196个单株的小群体检测结果表明该片段与Yr26共分离。【结论】从小麦近等基因系材料Nan137中获得了4个RGAs片段,其中片段R405可能是小麦抗条锈病基因Yr26的候选片段,但需进一步验证该候选片段的真实性。     

Cloning and Analysis of NBS-LRR Type Resistance Gene Analogues in Sweet Potato (Ipomoea batatas)

The degenerate primers were designed based on the conserved NBS-LRR motifs among the known disease-resistance genes. A fragment of about 500 bp was amplified from genomic DNA of sweet potato using the specifically designed degenerate primers. After cloning and sequencing,20 NBS-LRR type of disease-resistance gene analogue (RGAs) in sweet potato were observed. The deduced amino acid sequence of DNA fragment contains the conserved motifs of NBS-LRR type RGAs,such as P-loop,Kinase-2α,Kinase-3α and GLPL domain. The 20 RGAs could be sorted into two subclasses,namely TIR-NBS-LRR type and non-TIR-NBS-LRR type. Compared with the known resistance genes including N,L6 and M,the percentages of homologous amino acid sequence in 10 TIR-NBS-LRR range between 21%-44%. While other 10 non-TIR-NBS-LRR assume 15%-46% homology with the known resistance genes (Prf,RPM1,RPS2,etc.). Consequently the RGAs may further be used as molecular marker for screening the candidate disease-resistance genes in sweet potato.     

甘薯中NBS-LRR类抗病基因同源序列的克隆及序列分析(英文)

The degenerate primers were designed based on the conserved NBS-LRR motifs among the known disease-resistance genes. A fragment of about 500 bp was amplified from genomic DNA of sweet potato using the specifically designed degenerate primers. After cloning and sequencing,20 NBS-LRR type of disease-resistance gene analogue (RGAs) in sweet potato were observed. The deduced amino acid sequence of DNA fragment contains the conserved motifs of NBS-LRR type RGAs,such as P-loop,Kinase-2α,Kinase-3α and GLPL domain. The 20 RGAs could be sorted into two subclasses,namely TIR-NBS-LRR type and non-TIR-NBS-LRR type. Compared with the known resistance genes including N,L6 and M,the percentages of homologous amino acid sequence in 10 TIR-NBS-LRR range between 21%-44%. While other 10 non-TIR-NBS-LRR assume 15%-46% homology with the known resistance genes (Prf,RPM1,RPS2,etc.). Consequently the RGAs may further be used as molecular marker for screening the candidate disease-resistance genes in sweet potato.     

Cloning and Analysis of NBS-LRR Type Resistance Gene Analogues in Sweet Potato ( Ipomoea batatas)

The degenerate primers were designed based on the conserved NBS-LRR motifs among the known disense-resistance genes. A fragment of about 500 bp was amplified from genomic DNA of sweet potato using the specifically designed degenerate primers. After cloning and sequencing, 20 NBS-LRR type of disoase-resistance gene analogue (RGAs) in sweet potato were observed. The deduced amino acid sequence of DNA fragment contains the conserved motifs of NBS-LRR type RGAs, such as P-loop, Kinase-2α, Kinase-3α and GLPL domain. The 20 RGAs could be sorted into two subclasses, namely TIR-NBS-LRR type and non-TIR-NBS-LRR type. Compared with the known resistance genes including N, L6 and M, the percentages of homologous amino acid sequence in 10 TIR-NBS-LRR range between 21% -44%. While other 10 non-TIR-NBS-LRR assume 15% -46% homology with the known resistance genes (Prf, RPM1, RPS2, etc.). Consequently the RGAs may further be used as molecular marker for screening the candidate disease-resistauce genes in sweet potato.