Estimation of active soil microbial biomass by mathematical analysis of respiration curves: Calibration of the test procedure

The biokinetic properties of the active component of the soil biomass were estimated in a range of soils by mathematical simulation of the respiration curve obtained after the soil was amended with glucose. Microbial communities appeared to vary considerably with regard to their affinity for substrate, their maintenance coefficient and particularly the amount of active microbial biomass they contain. In soils from undisturbed natural ecosystems, the active biomasss component was on average about half that in arable agricultural soils. In a wheat field, the active but not the total microbial biomass was significantly stimulated by the growth of the crop. In the soils examined, the active biomass comprised 4% to 49% of the total soil biomass. A 10 h procedure is described for estimating the active soil biomass component, by monitoring either O₂ consumption or CO₂ production.     

Estimating the active and total soil microbial biomass by kinetic respiration analysis

 A model describing the respiration curves of glucose-amended soils was applied to the characterization of microbial biomass. Both lag and exponential growth phases were simulated. Fitted parameters were used for the determination of the growing and sustaining fractions of the microbial biomass as well as its specific growth rate (μ _max). These microbial biomass characteristics were measured periodically in a loamy silt and a sandy loam soil incubated under laboratory conditions. Less than 1% of the biomass oxidizing glucose was able to grow immediately due to the chronic starvation of the microbial populations in situ. Glucose applied at a rate of 0.5 mg C g^–1 increased that portion to 4–10%. Both soils showed similar dynamics with a peak in the growing biomass at day 3 after initial glucose amendment, while the total (sustaining plus growing) biomass was maximum at day 7. The microorganisms in the loamy silt soil showed a larger growth potential, with the growing biomass increasing 16-fold after glucose application compared to a sevenfold increase in the sandy loam soil. The results gained by the applied kinetic approach were compared to those obtained by the substrate-induced respiration (SIR) technique for soil microbial biomass estimation, and with results from a simple exponential model used to describe the growth response. SIR proved to be only suitable for soils that contain a sustaining microbial biomass and no growing microbial biomass. The exponential model was unsuitable for situations where a growing microbial biomass was associated with a sustaining biomass. The kinetic model tested in this study (Panikov and Sizova 1996) proved to describe all situations in a meaningful, quantitative and statistically reliable way. Received: 19 July 1999     

Estimation of soil microbial biomass: An analysis of the respiratory response of soils

The respiratory response method to determine microbial biomass during soil incubation was investigated. A maximum respiratory response at early stages of incubation can be determined without addition of extra substrates. The amount of substrate required to produce a maximum respiratory response after 2–3 days of incubation was found to be similar to that required after prolonged incubation. Soils with similar levels of soluble-carbon have similar substrate-saturation values. As the nutritional status of the soil would decline during incubation, the use of a more complete substrate than glucose is proposed to keep the soil nutrient composition consistent during respiratory response analysis. With the use of ¹⁴C it is possible to estimate the active fraction of the total biomass. The modifications and suggestions described herein for the respiratory response method, for biomass estimation, can enhance and be readily applied to long-term soil incubation studies.     

Salinity and sodicity effects on respiration and microbial biomass of soil

An understanding of the effects of salinity and sodicity on soil carbon (C) stocks and fluxes is critical in environmental management, as the areal extents of salinity and sodicity are predicted to increase. The effects of salinity and sodicity on the soil microbial biomass (SMB) and soil respiration were assessed over 12weeks under controlled conditions by subjecting disturbed soil samples from a vegetated soil profile to leaching with one of six salt solutions; a combination of low-salinity (0.5dSm⁻¹), mid-salinity (10dSm⁻¹), or high-salinity (30dSm⁻¹), with either low-sodicity (sodium adsorption ratio, SAR, 1), or high-sodicity (SAR 30) to give six treatments: control (low-salinity low-sodicity); low-salinity high-sodicity; mid-salinity low-sodicity; mid-salinity high-sodicity; high-salinity low-sodicity; and high-salinity high-sodicity. Soil respiration rate was highest (56–80mg CO₂-C kg⁻¹ soil) in the low-salinity treatments and lowest (1–5mg CO₂-C kg⁻¹ soil) in the mid-salinity treatments, while the SMB was highest in the high-salinity treatments (459–565mg kg⁻¹ soil) and lowest in the low-salinity treatments (158–172mg kg⁻¹ soil). This was attributed to increased substrate availability with high salt concentrations through either increased dispersion of soil aggregates or dissolution or hydrolysis of soil organic matter, which may offset some of the stresses placed on the microbial population from high salt concentrations. The apparent disparity in trends in respiration and the SMB may be due to an induced shift in the microbial population, from one dominated by more active microorganisms to one dominated by less active microorganisms.     

Grazing and plant-canopy effects on semiarid soil microbial biomass and respiration

The major objectives of this study were to determine the influence of grazing on the soil microbial biomass and activity in semiarid grassland and shrubland areas and to quantify the canopy effect (the differences in soil microbial biomass and activities between soils under plant canopies and soils in the open between plants). We also quantified changes in microbial biomass and activity during seasonal transition from dry to moist conditions. Chronosequences of sites withdrawn from grazing for 0, 11, and 16 years were sampled in a grassland (Bouteloua spp.) area and a shrubland (Atriplex canescens) area on and near the Sevilleta National Wildlife Reguge in central New Mexico, USA. Samples were obtained from beneath the canopies of plants (Yucca glauca in the grassland and A. canescens in the shrubland) and from open soils; they were collected three times during the spring and summer of a single growing season. Organic C, soil microbial biomass C, and basal respiration rates (collectively called the soil C triangle) were measured. We also calculated the microbial: organic C ratio and the metabolic quotient (ratio of respiration to microbial C) as measures of soil organic C stability and turnover. Although we had hypothesized that individual values of the soil C triangle would increase and that the ratios would decrease with time since grazing, differences in microbial parameters between sites located along the chronosequences were generally not significant. Grazing did not have a consistion effect on organic C, microbial C, and basal respiration in our chronosequences. The microbial: organic C ratio and the metabolic quotient generally increased with time since grazing on the shrubland chronosequence. The microbial: organic C ratio decreased with time since grazing and the metabolic quotient increased with time since grazing on the grassland chronosequence. The canopy effect was observed at all sites in nearly all parameters including organic C, microbial C, basal respiration, the microbial: organic C ratio, and the metabolic quotient which were predominantly higher in soils under the canopies of plants than in the open at all sites. Microbial biomass and activity did not increase during the experiment, even though the availability of moisture increased dramatically. The canopy effects were approximately equal on the shrubland and grassland sites. The microbial: organic C ratios and the metabolic quotients were generally higher in the shrubland soils than in the grassland soils.     

Effect of forest and soil type on microbial biomass carbon and respiration

The aim of study was to evaluate the variation of soil microbial biomass carbon (C_mic) and microbial respiration (M_R) in three types soil (Chromic Cambisols, Chromic Luvisols and Eutric Leptosols) of mixed beech forest (Beech- Hornbeam and Beech- Maple). Soil was randomly sampled from 0–10 cm layer (plant litter removed), 90 soil samples were taken. C_mic determined by the fumigation-extraction method and M_R by closed bottle method. Soil C_org, N_tot and pH were measured. There are significant differences between the soil types concerning the C_mic content and M_R. These parameters were highest in Chromic Cambisols following Chromic Luvisols, while the lowest were in Eutric Leptosols. A similar trend of C_org and N_tot was observed in studied soils. Two-way ANOVA indicated that soil type and forest type have significantly effect on the most soil characteristics. Chromic Cambisols shows a productive soil due to have the maximum C_mic, M_R, C_org and N_tot. In Cambisols under Beech- Maple forest the C_mic value and soil C/N ratio were higher compared to Beech-Hornbeam (19.5 and 4.1 mg C g^–1, and 16.3 and 3.3, respectively). This fact might be indicated that Maple litter had more easy decomposable organic compounds than Hornbeam. According to regression analysis, 89 and 68 percentage of C_mic variability could explain by soil C_org and N_tot respectively.     

Estimation of microbial biomass potassium in paddy field soil

Abstract

Potassium (K) in microbial cells, microbial biomass K, in soil has been recently recognized as a K pool for plant growth. We determined soil microbial biomass K in paddy fields to reveal its importance as a K pool in paddy field soil for the first time. Microbial biomass K ranged from 5 to 21 mg K kg^?1 in the soil samples periodically collected from a paddy field and the value corresponded to 41% of the exchangeable K on average. Both microbial biomass K and exchangeable K increased conspicuously due to the long-term application of livestock manure compost or rice straw compost. Biomass K was higher than exchangeable K under K-deficient conditions in the long-term experimental plots without K application. The present study revealed that the microbial biomass contained considerable amounts of K in paddy field soil, indicating the need for evaluation of the microbial biomass K as a source and a stock of K in soil that has been overlooked.     

Estimation of microbial biomass and activity in soil using microcalorimetry

Relationships between the rate of heat output from soil, the rate of respiration and the soil microbial biomass were investigated for 25 soils from northern Britain. The rate of heat output, measured in a Calvet microcalorimeter at 22°C, correlated well with the rate of carbon dioxide respiration. The average amount of heat evolved per cm³ of gas respired. 21.1 J cm^?3, suggests that the biomass metabolism was largely aerobic. The rate of heat output per unit of total microbial biomass was remarkably uniform over a wide range of soils, but showed differences depending upon whether the soil had been stored or amended. Mineral soils that had been stored at 4°C had the lowest heat output, 12.0 mW g^?1 biomass C, compared with a mean of 20.4 mW g^?1 biomass C for freshly-collected soils. Amendment with glucose (0.5% w/w) caused an immediate increase in respiration and heat output, up to 59.4 mW g^?1 biomass C for stored soils and 188.2 mW g^?1 biomass C for freshly collected soils. There was a consistent relationship between the biomass and the rate of heat output from freshly collected and amended mineral and organic soils which gave a linear fit using log transformed data: y= 0.6970+ 1.025x (r= 0.98, P < 0.001) (y=log₁₀ biomass C, μgC g^?1; x=log₁₀ rate of heat output at 22°C, μW g^?1). The overall relationship between biomass and the rate of heat output for all the amended samples was: 1 g biomass C= 180.05 ± 34.61 mW.     

土壤微生物生物量和呼吸强度对大气CO2浓度升高的响应

随着全球环境变化对陆地生态系统的影响逐渐成为公众和科学界关注的热点,CO2作为一种重要的温室气体受到格外重视.大气CO2浓度升高将直接影响陆地植物的光合作用[1].植物的光合产物约有20% ～ 50%被运送到地下,通过根系分泌及死亡输入土壤[2],因此大气CO2浓度升高将会间接影响土壤生态系统.长期以来,关于大气CO2浓度升高对农作物地上部分的研究较多,但关于大气CO2浓度升高对土壤特别是土壤微生物的影响的研究报道较少.     

Determination of the soil microbial biomass carbon using the method of substrate-induced respiration

Specific features of determining the carbon content in the soil microbial biomass using the method of substrate-induced respiration (MB_SIR) were studied as related to the conditions of the incubation (the glucose concentration and temperature) and pre-incubation (the duration and temperature) of the soil samples collected in the summer (tundra gley and soddy-podzolic soils and chernozems) and in different seasons (for the gray forest soil). The glucose concentration providing the highest substrate-induced respiration (SIR) in the soils studied was shown to be 2–15 mg/g. The MB_SIR in the soil samples collected in summer and in the soils pre-incubated for 10 and 22°C (7 days) did not significantly differ. The MB_SIR in the gray forest soil pre-incubated at 3, 6, and 10°C (winter, spring/autumn, and summer, respectively) and at 22°C (recommended by the authors of the SIR method) was similar for the cropland in all the seasons. For the meadow, it was the same in the winter, summer, and autumn, and, in summer, it did not differ only for the forest. For the comparative assessment of the MB_SIR, soil samples from different ecosystems are recommended to be collected in the autumn or in the summer. Soil samples of 100–500 g should be pre-incubated for 7 days at 22°C and moisture of 60% of the total water capacity; then, 1-2 g soil should be incubated with glucose (10 mg/g) at 22°C for 3–5 hours.     

Root-derived carbon in soil respiration and microbial biomass determined by 14C and 13C

Two approaches to quantitatively estimating root-derived carbon in soil CO₂ efflux and in microbial biomass were compared under controlled conditions. In the ¹⁴C labelling approach, maize (Zea mays) was pulse labelled and the tracer was chased in plant and soil compartments. Root-derived carbon in CO₂ efflux and in microbial biomass was estimated based on a linear relationship between the plant shoots and the below-ground compartment. Since the maize plants were grown on C₃ soil, in a second approach the differences in ¹³C natural abundance between C₃ and C₄ plants were used to calculate root-derived carbon in the CO₂ efflux and in the microbial biomass. The root-derived carbon in the total CO₂ efflux was between 69% and 94% using the ¹⁴C labelling approach and between 86% and 94% in the natural ¹³C labelling approach. At a ¹³C fractionation measured to be 5.2‰ between soil organic matter (SOM) and CO₂, the root-derived contribution to CO₂ ranged from 70% to 88% and was much closer to the results of the ¹⁴C labelling approach. Root-derived contributions to the microbial biomass carbon ranged from 2% to 9% using ¹⁴C labelling and from 16% to 36% using natural ¹³C labelling. At a 3.2‰ ¹³C fractionation between SOM and microbial biomass, both labelling approaches yielded an equal contribution of root-derived C in the microbial biomass. Both approaches may therefore be used to partition CO₂ efflux and to quantify the C sources of microbial biomass. However, the assumed ¹³C fractionation strongly affects the contributions of individual C sources.     

Changes in active microbial biomass by earthworms and grass amendments in agricultural soil

The influence of the earthworm Aporrectodea caliginosa on the biomass and the proportion of active and dormant soil microorganisms after the addition of cut perennial ryegrass (Lolium perenne) to upper soil from agricultural field was studied in a microcosm experiment. During a 2-month period, soil samples were taken 1, 8, 22, 36, 50, and 64 days after cut grass addition. A substrate-induced respiration (SIR) method was used to analyse the samples for total microbial biomass and the distribution of active and dormant microbial biomass. It was found that the addition of grass increased the microbial biomass (SIR) because of an increase in the active microbial biomass. After the initially high values, the active microbial biomass decreased slowly, and at day 64, it was still higher in the grass-amended soils than in the control treatment without grass addition. After 1 day, the active microbial biomass was higher in the soil with A. caliginosa than without the earthworm. At the subsequent samplings, there were no differences in microbial biomass or the proportion of dormant vs active microorganisms between the grass-amended soils. The average from all sampling occasions of SIR was higher in earthworm-treated soil.     

Soil respiration is not limited by reductions in microbial biomass during long-term soil incubations

Declining rates of soil respiration are reliably observed during long-term laboratory incubations. However, the cause of this decline is uncertain. We explored different controls on soil respiration to elucidate the drivers of respiration rate declines during long-term soil incubations. Following a long-term (707 day) incubation (30 °C) of soils from two sites (a cultivated and a forested plot at Kellogg Biological Station, Hickory Corners, MI, USA), soils were significantly depleted of both soil carbon and microbial biomass. To test the ability of these carbon- and biomass-depleted (“incubation-depleted”) soils to respire labile organic matter, we exposed soils to a second, 42 day incubation (30 °C) with and without an addition of plant residues. We controlled for soil carbon and microbial biomass depletion by incubating field fresh (“fresh”) soils with and without an amendment of wheat and corn residues. Although respiration was consistently higher in the fresh versus incubation-depleted soil (2 and 1.2 times higher in the fresh cultivated and fresh forested soil, respectively), the ability to respire substrate did not differ between the fresh and incubation-depleted soils. Further, at the completion of the 42 day incubation, levels of microbial biomass in the incubation-depleted soils remained unchanged, while levels of microbial biomass in the field-fresh soil declined to levels similar to that of the incubation-depleted soils. Extra-cellular enzyme pools in the incubation-depleted soils were sometimes slightly reduced and did not respond to addition of labile substrate and did not limit soil respiration. Our results support the idea that available soil organic matter, rather than a lack microbial biomass and extracellular enzymes, limits soil respiration over the course of long-term incubations. That decomposition of both wheat and corn straw residues did not change after major changes in the soil biomass during extended incubation supports the omission of biomass values from biogeochemical models.     

Short-term effects of tillage systems on active soil microbial biomass

 Conservation tillage, and especially no-tillage, induce changes in the distribution of organic pools in the soil profile. In long-term field experiments, marked stratification of the total soil microbial biomass and its activity have been observed as consequence of the application of no-tillage to previously tilled soils. Our objective was to study the evolution of the total and active soil microbial biomass and mineralized C in vitro during the first crop after the introduction of no-tillage to an agricultural soil. The experiment was performed on a Typic Hapludoll from the Argentinean Pampa. Remaining plant residues, total and active microbial biomass and mineralized C were determined at 0–5 cm and 5–15 cm depths, at three sampling times: wheat tilling, silking and maturity. The introduction of no-tillage produced an accumulation of plant residues in the soil surface layer (0–5 cm), showing stratification with depth at all sampling dates. Active microbial biomass and C mineralization were higher under no-tillage than under conventional tillage in the top 5 cm of the profile. The total soil microbial biomass did not differ between treatments. The active soil biomass was highly and positive correlated with plant residues (r ²=0.617;P<0.01) and with mineralized C (r ²=0.732;P<0.01). Consequently, the active microbial biomass and mineralized C reflected immediately the changes in residue management, whereas the total microbial biomass seemed not to be an early indicator of the introduction of a new form of soil management in our experiment. Received: 23 February 1999     

Relationships of soil respiration to microbial biomass, substrate availability and clay content

The roles of microbial biomass (MBC) and substrate supply as well as their interaction with clay content in determining soil respiration rate were studied using a range of soils with contrasting properties. Total organic C (TOC), water-soluble organic carbon, 0.5 M K₂SO₄-extractable organic C and 33.3 mM KMnO₄-oxidisable organic carbon were determined as C availability indices. For air-dried soils, these indices showed close relationship with flush of CO₂ production following rewetting of the soils. In comparison, MBC determined with the chloroform fumigation-extraction technique had relatively weaker correlation with soil respiration rate. After 7 d pre-incubation, soil respiration was still closely correlated with the C availability indices in the pre-incubated soils, but poorly correlated with MBC determined with three different techniques—chloroform fumigation extraction, substrate-induced respiration, and chloroform fumigation-incubation methods. Results of multiple regression analyses, together with the above observations, suggested that soil respiration under favourable temperature and moisture conditions was principally determined by substrate supply rather than by the pool size of MBC. The specific respiratory activity of microorganisms (CO₂-C/MBC) following rewetting of air-dried soils or after 7 d pre-incubation was positively correlated with substrate availability, but negatively correlated with microbial pool size. Clay content had no significant effect on CO₂ production rate, relative C mineralization rate (CO₂-C/TOC) and specific respiratory activity of MBC during the first week incubation of rewetted dry soils. However, significant protective effect of clay on C mineralization was shown for the pre-incubated soils. These results suggested that the protective effect of clay on soil organic matter decomposition became significant as the substrate supply and microbial demand approached to an equilibrium state. Thereafter, soil respiration would be dependent on the replenishment of the labile substrate from the bulk organic C pool.     

Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA

We studied the distribution of the indigenous bacterial and fungal communities in a forest soil profile. The composition of bacterial and fungal communities was assessed by denaturing gradient gel electrophoresis (DGGE) of total and extracellular DNA extracted from all the soil horizons. Microbial biomass C and basal respiration were also measured to assess changes in both microbial biomass and activity throughout the soil profile. The 16S rDNA-DGGE revealed composite banding patterns reflecting the high bacterial diversity as expected for a forest soil, whereas 18S rDNA-DGGE analysis showed a certain stability and a lower diversity in the fungal communities. The banding patterns of the different horizons reflected changes in the microbial community structure with increasing depth. In particular, the DGGE analysis evidenced complex banding patterns for the upper A1 and A2 horizons, and a less diverse microflora in the deeper horizons. The low diversity and the presence of specific microbial communities in the B horizons, and in particular in the deeper ones, can be attributed to the selective environment represented by this portion of the soil profile. The eubacterial profiles obtained from the extracellular DNA revealed the presence of some bands not present in the total DNA patterns. This could be interpreted as the remainders of bacteria not any more present in the soil because of changes of edaphic conditions and consequent shifting in the microbial composition. These characteristic bands, present in all the horizons with the exception of the A1, should support the concept that the extracellular DNA is able to persist within the soil. Furthermore, the comparison between the total and extracellular 16S rDNA-DGGE profiles suggested a downwards movement of the extracellular DNA.     

Effect of paclobutrazol on microbial biomass,respiration and cellulose decomposition in soil

Paclobutrazol is a plant growth regulator largely utilized in mango cultivation and usually applied directly to soil. The aim of this study was to examine the effect of paclobutrazol on soil microbial biomass, soil respiration and cellulose decomposition in Brazilian soils under laboratory conditions. Soil samples were collected from fields with and without a reported history of paclobutrazol application. A solution of paclobutrazol (8 mg of active ingredient kg^?1 of soil) was added to soils, which were then incubated at 28 °C for 30 days. Paclobutrazol decreased soil microbial biomass, soil respiration and cellulose decomposition in soil with and without a report of paclobutrazol application, while significant increase was observed in the respiratory quotient (qCO₂). Our results show that the soil microbiological attributes were negatively affected by paclobutrazol in short-term experiment.     

有机无机肥配施对盐渍化土壤微生物量和呼吸的影响

微生物可以通过摄入能量合成有机渗透压物质来实现对盐度的适应,然而,不同程度盐渍土微生物对能量的需求可能会发生改变。因此,该研究于2018－2019年开展田间定位试验,选取河套灌区轻度盐渍土S1（电导率为0.46 dS/m）及中度盐渍土S2（电导率为1.07 dS/m）为研究对象,设置了6个处理,包括不施氮（CK）,单施无机氮（U1）以及分别用有机氮（U3O1、U1O1、U1O3和O1）替代25%、50%、75%和100%的无机氮,监测了土壤微生物量碳氮及土壤呼吸在第二个生长季的动态状况。结果表明：土壤盐渍化程度增加会导致土壤微生物量及微生物活性下降,S1土壤较S2土壤微生物量碳高12.01%～68.81%,土壤微生物量氮高14.31%～58.58%,土壤呼吸速率高11.75%～54.71%。不同盐分条件下,适当的有机肥施入比例可以显著提高土壤微生物量及微生物活性,S1和S2盐渍土分别以U1O1及O1处理较优。相关性分析表明,土壤呼吸速率与土壤微生物量碳氮呈极显著正相关（P＜0.01）,土壤温度、土壤矿质氮与土壤微生物量碳氮、土壤呼吸速率呈显著正相关（P＜0.05）。从玉米产量及改善土壤微生物生存环境角度,得到该地区适宜的施肥模式为,轻度盐渍土：有机氮替代50%无机氮;中度盐渍土：有机氮替代100%无机氮。     

土壤微生物体氮的季节性变化及其与土壤水分和温度的关系

以杨陵土垫旱耕人为土(中等肥力红油土)为供试土壤进行田间试验和室内培养试验,研究土壤微生物体氮的动态变化及其土壤含水量和温度的关系。结果表明,田间土壤微生物体氮的变化有明显的季节性;夏季最高,冬季最低,其它时期居中;且与土壤温度有显著或极显著的正相关性,相关系数在0.855以上;试验期间土壤水分含量在10%以上,基本能满足微生物活动所需,因而微生物体氮的变化与水分关系并不密切。应用培养试验结果进一步证明了田间试验结果,即在4～36℃范围内,微生物体氮与温度呈线性相关,而在土壤含水量为6.75%～23.23%范围内,与水分呈指数相关关系,当土壤水分小于10.87%时,水分对微生物体氮有突出结果,当超过10.87%后,几乎没有影响。频繁的干湿交替会使微生物体氮显著减少,但冻融交替却无明显影响。     

Near-infrared characteristics of forest humus are correlated with soil respiration and microbial biomass in burnt soil

Near-infrared spectroscopy and soil physicochemical determinations (pH_H2O, organic matter content, total C content, NH _inf4 ^sup+ , total N content, cation-exchange capacity, and base saturation) were used to characterize fire-or wood ash-treated humus samples. The spectroscopic and the soil physicochemical analysis data from the humus samples were used separately to explain observed variations in soil respiration and microbial biomass C by partial least-square regression. The first regression component obtained from the physicochemical and spectroscopic characterization explained 10–12% and 60–80% of the biological variation, respectively. This suggests that information on organic material collected from near-infrared spectra is very useful for explaining biological variations in forest humus.