Short-term effects in soil microbial community following agronomic application of olive mill wastewaters in a field of olive trees

Olive mill wastewater (OMW) creates a disposal problem. The large amounts generated, combined with the high phenol and chemical oxygen demand concentrations, are the main difficulties in finding a solution for the management of these wastewaters. We investigated the short-term effect of spreading OMW on the soil surface of an olive grove on the soil microbial communities. Analyse of ester-linked fatty acid methyl ester (EL-FAME) were used to assess variation in soil microbial community structure after agronomic application of OMW. EL-FAME analysis showed significant shifts of specific groups of fatty acids 30 days after application of OMW to a field of olive trees at rates of 0 (control soil), 30, 60, 100, and 150 m³ ha⁻¹ of OMW. In particular, the branched saturated fatty acids indicative of Gram-positive bacteria decreased and the unsaturated fatty acids commonly found in Gram-negative bacteria and fungi increased. The fungal/bacterial ratio measured increased significantly with increasing OMW. Lower cy19/18:1ω7c and cy17/16:1ω7c ratios were found in the amended soil than the control soil, and we interpret that as an indication that nutrient availability may be more limiting in the control soil. Similarly, the relative abundances of monounsaturated fatty acids increased with added OMW, and this is consistent with the presence of high substrate availability in OMW-treated soil. Principal Components Analysis of the FAME profiles showed discrimination between the control soil and OMW amended soil. Differences in fatty acid profiles between OMW-treated soil and control soil suggests that amendment of soil with OMW favors specific groups of organisms. To our knowledge, this is the first report of alterations in the FAME profile in soils due to agronomic application of OMW.     

Change in soil properties and the soil microbial community following land spreading of olive mill wastewater affects olive trees key physiological parameters and the abundance of arbuscular mycorrhizal fungi

Olive mill wastewater (OMW) constitutes a major environmental problem for Mediterranean countries, where most of the world olive oil production takes place. The recycling of the OMW and its use as water for irrigation in agriculture, provided that its impact on soil and plant is established, is an attractive possibility for the Mediterranean countries. Investigations were performed on the influence of agronomic application of OMW (amount applied: 30, 60, 100 and 150 m³ ha^?1) in a field of olive trees on trees characters (photosynthesis, root-soluble carbohydrate and root colonisation), soil properties, and soil microbial community structure. Specific attention was paid to arbuscular mycorrhizal (AM) fungi. The soil fatty acid methyl ester (FAME) 16:1ω5 was used to quantify biomass of AM fungi and the root FAME 16:1ω5 analysis was used as index for the development of colonisation in the olive trees roots. A significant increase in organic C, C/N ratio, extractable phosphorus and exchangeable potassium was found after one year of agronomic application of OMW. The development of saprophytic fungi was significantly higher in the OMW amended soils, whereas the abundance of the soil FAME 16:1ω5, root FAME 16:1ω5, photosynthetic rates and the amount of the total root-soluble carbohydrate were decreased significantly after agronomic application of OMW. A principal component analysis (PCA) of the trees characteristics profiles showed discrimination between the nonirrigated and the OMW irrigated olive trees. These findings suggest that the altering functioning of arbuscular mycorrhizas should be considered as potential factors mediating olive trees responses to agronomic application of OMW when the OMW dose applied is higher than 30 m³ ha^?1. To our knowledge, this is the first report of alterations in the soil FAME 16:1ω5 and root FAME 16:1ω5 due to land spreading of OMW.     

Repeated application of diluted olive mill wastewater induces changes in the structure of the soil microbial community

Repeated application of diluted olive mill wastewater (OMW) is a common disposal method which allows the application of large amounts of OMW and improves the organic matter and nutrient status of Mediterranean soils. However, there is lack of information regarding the effects of this practice on the soil microbial community. A study was carried out to investigate these effects on the structure of the bacterial and fungal community of a loamy sand (LS) and a sandy loam (SL) soil, using denaturating gradient gel electrophoresis (DGGE) fingerprinting. OMW was daily applied as aqueous solutions of 0, 2 and 4%, in the presence or absence of nitrogen fertilization, for a three-month period. Multivariate analysis of the DGGE profiles showed that OMW applications resulted in marked changes in the fungal community in both soils, while nitrogen fertilization diminished these effects. Small effects were evident for the bacteria only in the LS soil and this was attributed to the higher availability of OMW-derived phenolics in this soil which resulted in a direct impact on bacteria. Nitrogen fertilization alleviated the effects of OMW on the bacterial community. We suggest that the impact of OMW on the structure of the soil microbial communities was mostly a result of its indirect effect on the soil nutritional status, which becomes enriched in organic substrates and poor in available nitrogen.     

Effect of swine and dairy manure amendments on microbial communities in three soils as influenced by environmental conditions

Understanding the impacts of manure amendments on soil microorganisms can provide valuable insight into nutrient availability and potential crop and environmental effects. Soil microbial community characteristics, including microbial populations and activity, substrate utilization (SU) profiles, and fatty acid methyl ester (FAME) profiles, were compared in three soils amended or not amended with dairy or swine manure at two temperatures (18 and 25°C) and two soil water regimes (constant and fluctuating) in laboratory incubation assays. Soil type was the dominant factor determining microbial community characteristics, resulting in distinct differences among all three soil types and some differing effects of manure amendments. Both dairy and swine manures generally increased bacterial populations, substrate diversity, and FAME biomarkers for gram-negative organisms in all soils. Microbial activity was increased by both manures in an Illinois soil but only by dairy manure in two Maine soils. Dairy manure had greater effects than swine manure on SU and FAME parameters such as increased activity, utilization of carbohydrates and amino acids, substrate richness and diversity, and fungal FAME biomarkers. Temperature and water regime effects were relatively minor compared with soil type and amendment, but both significantly affected some microbial responses to manure amendments. Overall, microbial characteristics were more highly correlated with soil physical factors and soil and amendment C content than with N levels. These results indicate the importance of soil type, developmental history, and environmental factors on microbial community characteristics, which may effect nutrient availability from manure amendments and should be considered in amendment evaluations.Mention of trade names or commercial products in this article is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the US Department of Agriculture     

废弃农耕地自然演替过程中微生物群落与土壤特性间的关系

The changes of microbial biomass carbon (MBC) and nitrogen (MBN) and microbial community in the topsoil of the abandoned agricultural land on the semi-arid Loess Plateau in China during the natural succession were evaluated to understand the relationship between microbial community and soil properties. MBC and MBN were measured using fumigation extraction, and microbial community was analyzed by the method of fatty acid methyl ester (FAME). The contents of organic C, total N, MBC, MBN, total FAME, fungal FAME, bacterial FAME and Gram-negative bacterial FAME at the natural succession sites were higher than those of the agricultural land, but lower than those of the natural vegetation sites. The MBC, MBN and total FAME were closely correlated with organic C and total N. Furthermore, organic C and total N were found to be positively correlated with fungal FAME, bacterial FAME, fungal/bacterial and Gram-negative bacterial FAME. Natural succession would be useful for improving soil microbial properties and might be an important alternative for sustaining soil quality on the semi-arid Loess Plateau in China.     

Long-term fertilization regimes influence FAME profiles of microbial communities in an arable sandy loam soil in Northern China

Soil samples collected from a long-term (19-year) experimental field with seven treatments were analyzed for fatty acids methyl esters (FAMEs) to determine fertilization regime effects on microbial community structure in sandy loam soils. The amounts of FAMEs in bacteria, actinomycetes, and fungi were highest with the two organic manure (OM)-fertilized treatments (OM and 1/2 OMN – half OM plus half mineral fertilizer), lowest with the NK treatment, and fell in the middle levels with three mineral P-fertilized treatments (NPK, NP and PK) and the control with no fertilizer (CK), with the exception of fungi which showed no significant difference among the five treatments without OM fertilization. Principal component analysis of FAME patterns indicated that NPK was not significantly different from CK, but the two manure-containing treatments and the P-deficiency treatment (NK) were significantly different from CK and NPK. Redundancy analysis plot showed that FAME amounts significantly correlated to soil organic C and total N contents, while soil available P and total P contents, which were greatly decreased by the NK treatment, also had positive and substantial effects on soil microbial FAMEs. The results demonstrated the importance of P fertilization as well as organic manure in maintaining soil microbial biomass and impacting community structure.     

Characterization of redox-related soil microbial communities along a river floodplain continuum by fatty acid methyl ester (FAME) and 16S rRNA genes

Redox states affect substrate availability and energy transformation, and, thus, play a crucial role in regulating soil microbial abundance, diversity, and community structure. We evaluated microbial communities in soils under oxic, intermittent, and anoxic conditions along a river floodplain continuum using fatty acid methyl ester (FAME) and 16S rRNA genes-based terminal-restriction fragment length polymorphism (T-RFLP) bacterial fingerprints. In all the soils tested, microbial communities clustered according to soil redox state by both evaluation techniques. Bacteria were dominant components of soil microbial communities, while mycorrhizal fungi composed about 12% of the microbial community in the oxic soils. Gram-positive bacteria consisted >10% of the community in all soils tested and their abundance increased with increasing soil depth when shifting from oxic to anoxic conditions. In the anoxic soils, Gram-positive bacteria composed about 16% of the total community, suggesting that their growth and maintenance were not as sensitive to oxygen supply as for other microbes. In general, microorganisms were more abundant and diverse, and distributed more evenly in the oxic layers than the anoxic layers. The decrease in abundance with increasing oxygen and substrate limitation, however, was considerably more drastic than the decrease in diversity, suggesting that growth of soil microorganisms is more energy demanding than maintenance. The lower diversity in the anoxic than the oxic soils was attributed primarily to the differences in oxygen availability in these soils.     

Soil Microbial Community Diversity and Its Relationships with Geochemical Elements under different Farmlands in Shouguang,China

The aims of this study were to investigate soil microbial community characteristics and their interrelationships with soil geochemistry under different farmlands in Shouguang, China. The traditional dilution plate counts, BIOLOG system, and fatty acid methyl ester (FAME) analyses were used to assess microbial populations, substrate utilization, and fatty acid profiles. The number of aerobic heterotrophic bacteria varied significantly among untilled land, maize, and mungbean fields. The amounts of actinomycetes, fungal fatty acids, and Gram-positive/Gram-negative bacteria ratios varied greatly among celery, tomato, and aubergine fields. In the tomato field, the soil microbial community characteristics were significantly different from other fields. Principal component analysis of BIOLOG and FAME data revealed differences in the catabolic capability and fatty acid profiles of soil microbial communities among different farmlands. Spearman correlation analyses showed that in these sand clay soils of Shouguang, microbial communities in different farmlands were closely correlated with soil geochemical elements, moisture, and organic matter.     

Effect of organic mulches on soil bacterial communities one year after application

The application of organic mulches as a soil cover is effective in improving the quality of soil. However, very little information is available on the effect of mulches on the soil microbial community. In this study, we investigated the effect of various organic mulches on soil dehydrogenase activity (DHA) and microbial community structures in the top 1 cm and 5 cm below the soil surface 1 year after application of the mulches. DHA was stimulated at both depths in plots mulched with grass clippings (GC), but was not significantly different from the control for the other mulch treatments. Fatty acid methyl ester (FAME) analysis and denaturing gradient gel electrophoresis (DGGE) of polymerase chain reaction-amplified 16S rDNA fragments were used to assess changes in the soil microbial community structure. Cluster analysis and principle component analysis of FAME profiles showed that only soil mulched with pine chips distinctively clustered from the other treatments. At the soil surface, bacterial DGGE profiles revealed that distinct shifts in several bacterial populations occurred in soils mulched with GC and eucalyptus yardwaste (EY), while DGGE profiles from soil at the 5 cm depth revealed no distinct changes. Changes in bacterial diversity at the soil surface under different mulches were calculated based on the number of bands in the DGGE profile using the Shannon-Weaver index of diversity ( H). Compared to the control ( H =0.9), the GC- and EY-treated soils showed slightly increased bacterial diversity, with an H of 1.1 and 1.0, respectively. These results indicate that the long-term effect of organic mulches on the soil microbial activity and community structure is highly dependent upon the type of mulch and is mostly exerted in the top few centimeters of the soil profile.     

Carbon pulses but not phosphorus pulses are related to decreases in microbial biomass during repeated drying and rewetting of soils

Drying and rewetting cycles are known to be important for the turnover of carbon (C) in soil, but less is known about the turnover of phosphorus (P) and its relation to C cycling. In this study the effects of repeated drying-rewetting (DRW) cycles on phosphorus (P) and carbon (C) pulses and microbial biomass were investigated. Soil (Chromic Luvisol) was amended with different C substrates (glucose, cellulose, starch; 2.5 g C kg⁻¹) to manipulate the size and community composition of the microbial biomass, thereby altering P mineralisation and immobilisation and the forms and availability of P. Subsequently, soils were either subjected to three DRW cycles (1 week dry/1 week moist) or incubated at constant water content (70% water filled pore space). Rewetting dry soil always produced an immediate pulse in respiration, between 2 and 10 times the basal rates of the moist incubated controls, but respiration pulses decreased with consecutive DRW cycles. DRW increased total CO₂ production in glucose and starch amended and non-amended soils, but decreased it in cellulose amended soil. Large differences between the soils persisted when respiration was expressed per unit of microbial biomass. In all soils, a large reduction in microbial biomass (C and P) occurred after the first DRW event, and microbial C and P remained lower than in the moist control. Pulses in extractable organic C (EOC) after rewetting were related to changes in microbial C only during the first DRW cycle; EOC concentrations were similar in all soils despite large differences in microbial C and respiration rates. Up to 7 mg kg⁻¹ of resin extractable P (P_resin) was released after rewetting, representing a 35-40% increase in P availability. However, the pulse in P_resin had disappeared after 7 d of moist incubation. Unlike respiration and reductions in microbial P due to DRW, pulses in P_resin increased during subsequent DRW cycles, indicating that the source of the P pulse was probably not the microbial biomass. Microbial community composition as indicated by fatty acid methyl ester (FAME) analysis showed that in amended soils, DRW resulted in a reduction in fungi and an increase in Gram-positive bacteria. In contrast, the microbial community in the non-amended soil was not altered by DRW. The non-selective reduction in the microbial community in the non-amended soil suggests that indigenous microbial communities may be more resilient to DRW. In conclusion, DRW cycles result in C and P pulses and alter the microbial community composition. Carbon pulses but not phosphorus pulses are related to changes in microbial biomass. The transient pulses in available P could be important for P availability in soils under Mediterranean climates.     

Soil microbial community characteristics along an elevation gradient in the Laguna Mountains of Southern California

We sampled soil at four sites in the Laguna Mountains in the western Sonoran Desert to test the effects of site and sample location (between or beneath plants) on fatty acid methyl ester (FAME) and carbon substrate ulilization (Biolog) profiles. The four sites differed in elevation, soil type, plant community composition, and plant percent cover. Soil pH decreased and plant density increased with elevation. Fertile islands, defined as areas beneath plants with greater soil resources than bare areas, are present at all sites, but are most pronounced at lower elevations. Consistent with this pattern, fertile islands had the greatest influence on FAME and Biolog profiles at lower elevations. Based on the use of FAME biomarker and principal components analyses, we found that soil microbial communities between plants at the lowest elevation had proportionally more Gram-negative bacteria than all other soils. At the higher elevation sites there were few differences in FAME profiles of soils sampled between vs. beneath plants. Differences in FAME profiles under plants among the four sites were small, suggesting that the plant influence per se is more important than plant type in controlling FAME profiles. Since microbial biomass carbon was correlated with FAME number (r=0.85,P<0.0001) and with FAME named (r=0.88,P<0.0001) and total areas (r=0.84,P<0.0001), we standardized the FAME data to ensure that differences in FAME profiles among samples were not the result of differences in microbial biomass. Differences in microbial substrate utilization profiles among sampling locations were greatest between samples taken under vs. between plants at the two lower elevation sites. Microbial substrate utilization profiles, therefore, also seem to be influenced more by the presence of plants than by specific plant type.     

Soil microbial communities response to herbicide 2,4-dichlorophenoxyacetic acid butyl ester

2,4-Dichlorophenoxyacetic acid butyl ester (2,4-D butyl ester) is extensively applied for weed control in cultivation fields in China, but its effect on soil microbial community remains obscure. This study investigated the microbial response to 2,4-D butyl ester application at different concentrations (CK, 10, 100 and 1000 μg g^?1) in the soils with two fertility levels, using soil dilution plate method and phospholipid fatty acid (PLFA) analysis. Culturable microorganisms were affected by the herbicide in both soils, particularly at the higher concentration. After treating soil with 100 μg g^?1 herbicide, culturable bacteria and actinomycetes were significantly higher, compared to other treatments. Treatment of soil with 1000 μg g^?1 2,4-D butyl ester caused a decline in culturable microbial counts, with the exception of fungal numbers, which increased over the incubation time. PLFA profiles showed that fatty acids for Gram-negative (GN) bacteria, Gram-positive (GP) bacteria, total bacteria and total fungi, as well as total PLFAs, varied with herbicide concentration for both soil samples. As herbicide concentration increased, the GN/GP ratio decreased dramatically in the two soils. The higher stress level was in the treatments with high concentrations of herbicide (1000 μg g^?1) for both soils. Principal component analysis of PLFAs showed that the addition of 2,4-D butyl ester significantly shifted the microbial community structure in the two soils. These results showed that the herbicide 2,4-D butyl ester might have substantial effects on microbial population and microbial community structure in agricultural soils. In particular, the effects of 2,4-D butyl ester were greater in soil with low organic matter and fertility level than in soil with high organic matter and fertility level.     

施肥对中国农田土壤微生物群落结构与酶活性影响的整合分析

【目的】 施肥能直接或间接改变农田生态系统的养分平衡,从而影响土壤的物理、化学和生物学特性。本研究探讨不同种植制度和土壤条件下施肥对农田土壤生物学特性的影响程度,为合理施肥和土壤肥力提升提供科学依据。 【方法】 通过收集近10年 (2008—2018年) 来发表的文献,建立了包含185组微生物量及群落结构等相关内容的数据库。采用整合分析方法(Meta-analysis),定量分析了施肥对土壤微生物量、群落结构以及酶活性的影响。 【结果】 与不施肥相比,施肥显著提高了土壤微生物磷脂脂肪酸 (PLFA) 和微生物量碳、氮含量,提高幅度分别为28.5%、30.9%和41.6%。施用 (单施或配施) 有机物料对土壤微生物总PLFA含量及微生物量碳、氮含量的提高幅度分别为47.3%、50.4%和58.7%,相当于施用化肥的2.8、2.4和3.9倍。与不施肥相比,施肥均能增加各类微生物菌群PLFA含量,对细菌、真菌及放线菌的提高幅度为23.8%～30.4%,对革兰氏阴性菌(G–)和革兰氏阳性菌 (G+) 的提高幅度为37.8%～43.2%,且施用有机物料处理对各类微生物菌群PLFA含量的提高幅度显著高于施化肥处理。施用化肥对土壤微生物总PLFA含量的提高幅度在一年两熟制区为17.9%,在水田和水旱轮作条件下为18.3%～27.6%,而在一年一熟制区及旱地条件下对土壤微生物总PLFA含量无显著影响。在不同pH的土壤中,施用有机物料对微生物总PLFA的提高幅度均显著高于施化肥处理。在pH < 6与pH > 8的土壤上施用化肥对微生物总PLFA含量无明显影响。施肥显著提高了与土壤有机质分解相关的β-葡萄糖苷酶(42.4%)和乙酰氨基葡萄糖苷酶(174.5%)的活性,对与氮循环相关的亮氨酸氨基肽酶活性无显著影响。统计分析还表明,施肥并未改变土壤微生物的真菌细菌比(F∶B)和革兰氏阳性菌革兰氏阴性菌比(G +∶G–)。 【结论】 在不同种植制度、土地利用类型和土壤pH下,施肥显著改变了土壤微生物量和与有机质分解相关的酶活性,但未改变土壤微生物的真菌细菌比(F∶B)和革兰氏阳性菌革兰氏阴性菌比(G+∶G–)。单施或配施有机物料均有利于提高农田土壤微生物总量及各类菌群的生物量,效果显著好于单施化肥。      

Effects of subsurface aeration and trinexapac-ethyl application on soil microbial communities in a creeping bentgrass putting green

The sensitivity of creeping bentgrass (Agrostis palustris Huds.) to the extreme heat found in the southeastern United States has led to the development of new greens-management methods. The purpose of this study was to examine the effects of subsurface aeration and growth regulator applications on soil microbial communities and mycorrhizal colonization rates in a creeping bentgrass putting green. Two cultivars (Crenshaw and Penncross), a growth regulator (trinexapac-ethyl), and subsurface aeration were evaluated in cool and warm seasons. Total bacterial counts were higher in whole (unsieved) soils than in sieved soils, indicating a richer rhizosphere soil environment. Mycorrhizal infection rates were higher in trinexapac-ethyl (TE) treated plants. High levels of hyphal colonization and relatively low arbuscule and vesicle occurrence were observed. Principal components analysis of whole-soil fatty acid methyl ester (FAME) profiles indicated that warm-season microbial populations in whole and sieved soils had similar constituents, but the populations differed in the cool season. FAME profiles did not indicate that subsurface aeration and TE application affected soil microbial community structure. This is the first reported study investigating the influences of subsurface aeration and TE application on soil microorganisms in a turfgrass putting green soil.     

Changes in the microbial activity in a soil amended with oak and pine residues and treated with linuron herbicide

This work studies the effects of wood amendments on soil microbial community functioning and on the potential of this community for linuron degradation. For this purpose, soil dehydrogenase activity and the number of live bacteria, which represent broad scale measurements of the activity and viability of soil organisms, were assessed in soil treated with linuron and either amended with pine or oak wood or unamended (sterilized and non-sterilized). The overall results show that the microbial community had a significant role in linuron degradation. The linuron half-life values indicated a slower degradation rate in pine and oak amended soils than in unamended ones. This is attributed both to the higher sorption of linuron by these soils compared to the unamended ones and a consequent lower bioavailability of the herbicide for microbial degradation, and to the use of the pine and oak as an alternative carbon source by degrading microorganisms. Linuron did not affect the microbial community in terms of dehydrogenase activity and number of live bacteria, presumably because it had adapted to the herbicide. However, the dehydrogenase activity was significantly higher in the soils amended with pine or oak than in the non-amended ones, indicating that the presence of a carbon source favoured the overall bacterial community.     

Seasonal, soil type, and alternative management influences on microbial communities of vegetable cropping systems

Microbial community responses to alternative management may be indicative of soil quality change. In this study, soils were collected from research plots over 2 years and from commercial grower fields over 1 year. Treatments at the sites included 1-9 years of either winter cover cropping or winter fallow practices. Soils were assayed for microbial fatty acid methyl esters (FAMEs), direct count microscopy and Biolog substrate utilization potentials to assess management and environmental influences on soil communities. The strongest influence was season. Soils in early spring (prior to termination of the cover crop) utilized fewer carboxylic acids and generally were enriched in eukaryotic FAMEs, whereas proportionally more bacterial FAMEs were detected in soils at canopy closure and harvest of the summer vegetable crop. Within a season, community FAME and Biolog patterns were related to field properties. FAME profiles from grower fields in early spring and harvest were correlated significantly with soil texture, cation exchange capacity, and carbon content. Changes in community structure and Biolog potential occurred in some soils in response to winter cover crops, although effects were not observed until cover crop incorporation. Greater amounts of fungal and protozoan FAME markers were detected in some cover-cropped soils compared to winter fallow soils. Cover crop residues increased FAME diversity at one research station and Biolog diversity at two research stations and the grower fields. Although seasonal and field-dependent factors are major determinants of microbial community structure, shifts can occur as soil physical and chemical properties change in response to alternative practices, as demonstrated by this study.     

柳枝稷生物炭对来自不同地区的两种土壤上植物生物量和微生物动态的影响

Biochar amendments to soils may alter soil function and fertility in various ways, including through induced changes in the microbial community. We assessed microbial activity and community composition of two distinct clayey soil types, an Aridisol from Colorado (CO) in the U.S. Central Great Plains, and an Alfisol from Virginia (VA) in the southeastern US following the application of switchgrass (Panicum virgatum) biochar. The switchgrass biochar was applied at four levels, 0%, 2.5%, 5%, and 10%, approximately equivalent to biochar additions of 0, 25, 50, and 100 t ha^-1, respectively, to the soils grown with wheat (Triticum aestivum) in an eight-week growth chamber experiment. We measured wheat shoot biomass and nitrogen (N) content and soil nutrient availability and N mineralization rates, and characterized the microbial fatty acid methyl ester (FAME) profiles of the soils. Net N mineralization rates decreased in both soils in proportion to an increase in biochar levels, but the effect was more marked in the VA soil, where net N mineralization decreased from -2.1 to -38.4 mg kg^-1. The 10% biochar addition increased soil pH, electrical conductivity, Mehlich- and bicarbonate-extractable phosphorus (P), and extractable potassium (K) in both soil types. The wheat shoot biomass decreased from 17.7 to 9.1 g with incremental additions of biochar in the CO soil, but no difference was noted in plants grown in the VA soil. The FAME recovery assay indicated that the switchgrass biochar addition could introduce artifacts in analysis, so the results needed to be interpreted with caution. Non-corrected total FAME concentrations indicated a decline by 45% and 34% with 10% biochar addition in the CO and VA soils, respectively, though these differences became nonsignificant when the extraction efficiency correction factor was applied. A significant decline in the fungi:bacteria ratio was still evident upon correction in the CO soil with biochar. Switchgrass biochar had the potential to cause short-term negative impacts on plant biomass and alter soil microbial community structure unless measures were taken to add supplemental N and labile carbon (C).     

Olive mill waste and glyphosate‐based herbicide addition to olive grove soils: effects on microbial activities and their responses to drying–rewetting cycles

The objective of this experimental study was to determine the effect of agronomic practices usually implemented in olive groves (addition of olive mill waste and herbicides) on soil microbial communities and to test whether drought enhanced such effects. For that purpose, mesocosms containing soil cores from olive groves were incubated for 5 months under either of the three treatments: (i) addition of olive mill waste (OMW), (ii) addition of glyphosate‐based herbicide (Gly treatment) and (iii) both treatments. Half of the mesocosms were subjected or not (controls) to drying–rewetting cycles (D/Rw) for 1 month (1 D/Rw) or 3 months (3 D/Rw). In the controls, 2 months after the Gly treatment, higher lipase activities were observed compared with no practice treatment as well as a significant change in catabolic profiles of cultivable microbial communities. Three months later, lipase activities significantly decreased under the Gly treatment. Addition of OMW together with Gly treatment counteracted the negative effect of the herbicide on lipase activities. After three D/Rw cycles, Gly treatment modified catabolic profiles and induced a decrease in functional diversity. Overall, the combination of glyphosate‐based herbicide with OMW was a conservative practice that maintained soil functioning and led to a better response to D/Rw cycles.     

Capacity of fatty acid profiles and substrate utilization patterns to describe differences in soil microbial communities associated with increased salinity or alkalinity at three locations in South Australia

 Fatty acid methyl ester (FAME) profiles, together with Biolog substrate utilization patterns, were used in conjunction with measurements of other soil chemical and microbiological properties to describe differences in soil microbial communities induced by increased salinity and alkalinity in grass/legume pastures at three sites in SE South Australia. Total ester-linked FAMEs (EL-FAMEs) and phospholipid-linked FAMEs (PL-FAMEs), were also compared for their ability to detect differences between the soil microbial communities. The level of salinity and alkalinity in affected areas of the pastures showed seasonal variation, being greater in summer than in winter. At the time of sampling for the chemical and microbiological measurements (winter) only the affected soil at site 1 was significantly saline. The affected soils at all three sites had lower organic C and total N concentrations than the corresponding non-affected soils. At site 1 microbial biomass, CO₂-C respiration and the rate of cellulose decomposition was also lower in the affected soil compared to the non-affected soil. Biomarker fatty acids present in both the EL- and PL-FAME profiles indicated a lower ratio of fungal to bacterial fatty acids in the saline affected soil at site 1. Analysis of Biolog substrate utilization patterns indicated that the bacterial community in the affected soil at site 1 utilized fewer carbon substrates and had lower functional diversity than the corresponding community in the non-affected soil. In contrast, increased alkalinity, of major importance at sites 2 and 3, had no effect on microbial biomass, the rate of cellulose decomposition or functional diversity but was associated with significant differences in the relative amounts of several fatty acids in the PL-FAME profiles indicative of a shift towards a bacterial dominated community. Despite differences in the number and relative amounts of fatty acids detected, principal component analysis of the EL- and PL-FAME profiles were equally capable of separating the affected and non-affected soils at all three sites. Redundancy analysis of the FAME data showed that organic C, microbial biomass, electrical conductivity and bicarbonate-extractable P were significantly correlated with variation in the EL-FAME profiles, whereas pH, electrical conductivity, NH₄-N, CO₂-C respiration and the microbial quotient were significantly correlated with variation in the PL-FAME profiles. Redundancy analysis of the Biolog data indicated that cation exchange capacity and bicarbonate-extractable K were significantly correlated with the variation in Biolog substrate utilization patterns. Received: 8 March 2000     

Changes in microbial community structure following herbicide (glyphosate) additions to forest soils

Glyphosate applied at the recommended field rate to a clay loam and a sandy loam forest soil resulted in few changes in microbial community structure. Total and culturable bacteria, fungal hyphal length, bacterial:fungal biomass, carbon utilization profiles (BIOLOG), and bacterial and fungal phospholipid fatty acids (PLFA) were unaffected 1, 3, 7, or 30 days after application of a commercial formulation (Roundup^®). In contrast, a high concentration of glyphosate (100× field rate) simulating an undiluted chemical spill substantially altered the bacterial community in both soils. Increases in total bacteria, culturable bacteria, and bacterial:fungal biomass were rapid following application. Culturable bacteria increased from about 1% of the total population in untreated soil to as much as 25% at the high concentration by day 7, indicating enrichment of generalist bacteria. Community composition in both soils shifted from fungal dominance to an equal ratio of bacteria to fungi. Functional diversity of culturable bacteria, estimated by C substrate utilization, also increased at the high glyphosate concentration, particularly in the clay loam soil. Unlike the other bacterial indices, only minor changes in bacterial PLFA resulted after the third day following the 100× field rate application. Apparently the herbicide resulted in an across-the-board stimulation of bacteria that was not reflected by the finer-scale PLFA community structure. Changes in fungal properties (hyphae, propagules, PLFA biomarkers) were few and transient. We conclude that the commercial formulation of glyphosate has a benign affect on community structure when applied at the recommended field rate, and produces a non-specific, short-term stimulation of bacteria at a high concentration.