Exudates of dark septate endophyte (DSE) modulate the development of the arbuscular mycorrhizal fungus (AMF) Gigaspora rosea

Exudates of a dark septate endophyte (DSE) identified as Dreschlera sp., a common endophyte isolated by the inner cortical cells of the grass Lolium multiflorum, were put in contact with the arbuscular mycorrhizal fungus (AMF) Gigaspora rosea. These exudates stimulated the hyphal length and the hyphal branching of the AMF. A negative effect on the extramatrical phase of the AMF was detected. This is the first report to show how exudates of DSE can affect the development of AMF. These results show that DSE could be modifying the mycorrhizal status of the plants, modulating a different symbiosis in the rhizosphere.     

Influence of irrigation with pulp and paper mill effluent on soil chemical and microbiological properties

Summary Irrigation of sugarcane crops with combined pulp and paper mill effluent increased soil pH, organic C, N, P, and K. Over a period of 15 years effluent application increased exchangeable Na by 4.5-fold compared with control soil (well-water irrigated), which ultimately elevated the Na adsorption ratio of the soils. The combined effluent irrigation increased the soil populations of bacteria, actinomycetes, fungi, rhizobia, and yeasts. The populations of soil microorganisms were higher after 15 years of effluent treatment, followed by 3, 2, and 1 year of effluent treatment; these populations were directly proportional to soil organic C and to the available nutrient status of the soils. Regular monitoring of microflora showed a considerable change in the populations from one sampling month to another. Soil samples, including the control, collected in May (summer) showed maximum counts of bacteria, fungi, rhizobia, and yeasts.     

Environmental determinants of the arbuscular mycorrhizal fungal infectivity of Swiss agricultural soils

Arbuscular mycorrhizal fungi are ubiquitous inhabitants of soils, and they are involved in cycling elements such as phosphorus and carbon between soils and plants. However, the environmental factors determining their activity and community structure in different soils are still not fully understood. Here, a bioassay is presented to assess the infectivity of indigenous mycorrhizal communities in twenty soils sampled in the Swiss agricultural belt north of the Alps. This bioassay indicated clear negative relationships between the mycorrhizal colonization of bioassay plant roots and the phosphorus and nitrogen concentrations in plant biomass. Further, comparison of the bioassay results with a range of physico-chemical, biological, and geographic parameters of the soils confirmed a negative relationship between the soil phosphorus status and the mycorrhizal colonization of the plants. Other parameters, such as land use, base saturation, pH, and soil texture, had little explanatory value for patterns in the growth, nutrition, and mycorrhizal colonization of the bioassay plants. The results of this study were compared with those of a previous one that used the same methods, and that examined the influence of soil pollution on mycorrhizal infectivity. It appears that the results of a mycorrhizal infectivity assay could serve as a comprehensive and rather universal indicator of soil quality.     

The composition characteristics of arbuscular mycorrhizal fungal communities associated with barley in saline-alkaline soils in Central Anatolia

ABSTRACT

Central Anatolia, which suffers from salinity, alkalinity, and drought stresses, is one of the most important cultivation regions of barley (Hordeum vulgare) in Turkey. Arbuscular mycorrhizal fungi (AMF) could promote barley production under several stresses; however, only a little information is available for AMF community composition in Turkish arable soils. In this study, barley root samples were collected from eight sites in the Central Anatolian region during the growing season (GS: April) and the harvest season (HS: July) in 2012, and the composition of AMF communities were elucidated based on the partial sequence of the AMF 18S rRNA gene using high-throughput sequencing technology. As a result, barley-AMF symbioses in this region were highly dominated by Glomeraceae (71.8% in GS and 59.2% in HS), followed by Claroideoglomeraceae (10.3% in GS and 15.9% in HS), Gigasporaceae (9.1% in GS and 13.1% in HS), and Acaulosporaceae (5.8% in GS and 7.7% in HS). Compared to Glomeraceae and Claroideoglomeraceae families, communities of Acaulosporaceae, Diversisporaceae, Paraglomeraceae, and Gigasporaceae consisted of fewer AMF species. The AMF evenness significantly increased from GS to HS. The most dominant AMF sequence, VTX00248 in the MaarjAM database, was closely related to Rhizophagus, which occupied 25.8% and 14.7% of the total AMF sequences in GS and HS, respectively. The relative abundance of AMF related to Rhizophagus tended to be reduced in HS, suggesting that the species could form mycorrhiza in the early stages of barley growth in this region. On the other hand, the relative abundance of Claroideoglomeraceae and Scutellosporaceae tended to increase in HS. Soil CaCO₃ content significantly influenced AMF community compositions in GS, while soil pH and EC showed no significant impact on AMF community compositions. Based on discriminant analysis, 11 VTXs (related Acaulospora, Claroideoglomus, Funneliformis, Gigaspora, and Glomus) showed higher abundance in the barley roots grown in the soil with relatively high CaCO₃ content, suggesting that these sequences might be adapted to such an environment.     

Root colonisation by arbuscular mycorrhizal, fine endophytic and dark septate fungi across a pH gradient in acid beech forests

Colonisation by root endophytes can be beneficial to plants growing on acid, nutrient-poor soils. Arbuscular mycorrhizal (AM) fungi can supply herbs with nutrients and may give protection against aluminium toxicity. Two other root colonising fungi, fine endophytes (FE) and dark septate fungi (DSE), are less well known but are potentially of benefit to their host plant. AM fungi are the most prevalent symbionts in herbs at neutral to acidic soil pH. At extremely low pH, fungal growth can be limited and AM colonisation is usually rare. Fine and dark septate endophytes, on the other hand, have been observed more often under these conditions. In order to relate endophyte colonisation to a gradient in soil pH, we investigated root colonisation by AM, FE and DSE in Maianthemum bifolium, Galium odoratum, Mercurialis perennis and Stellaria nemorum, from a range of acidic beech forests. With decreasing pH, colonisation by AM decreased, whereas the other two endophytes increased. AM and FE colonisation were inversely correlated in Maianthemum bifolium. We compared changes in root colonisation with those in chemical composition of soil and leaf samples and found a positive correlation between leaf magnesium concentrations and the presence of DSE in Galium odoratum. Aluminium concentration in Maianthemum bifolium tended to be lower when FE colonisation was high, suggesting a possible role for the fungi in plant protection against Al. We suggest that FE and DSE may replace AM fungi in herbaceous vegetation at extremely low pH, counteracting some of the negative effects of high soil acidity on plants.     

Differential decomposition of arbuscular mycorrhizal fungal hyphae and glomalin

Arbuscular mycorrhizal fungi (AMF) are obligate symbionts of most higher plants. In addition to being a major component of soil microbial biomass, AMF hyphae produce glomalin, a recalcitrant glycoproteinaceous substance highly correlated with soil aggregate water stability. This study addresses the lack of knowledge concerning the decomposition of hyphae and glomalin. We used an experimental design that exploited the lack of saprobic capabilities of AMF hyphae by incubating field soil samples in the dark, and hence in the absence of plant or AMF hyphal growth. In 150 days, hyphal length decreased 60%, while glomalin, quantified by the Bradford protein assay, declined only 25%. Immuno-reactive glomalin decreased 46%. This study serves as a proof-of-concept for further examination of factors that influence decomposition of AMF hyphae using similar experimental designs.     

Diversity and biogeography of arbuscular mycorrhizal fungi in agricultural soils

It has widely been acknowledged that the diversity of arbuscular mycorrhizal fungi (AMF) is greatly affected by climate, land use intensity, and soil parameters. The objective of this study was to investigate AMF diversity in multiple agricultural soils (154 sites; 92 grasslands and 62 croplands) distributed over all agricultural regions in Switzerland and differing in a number of soil parameters (e.g., land use type and intensity, and altitude). We highlighted the main factors responsible for major AMF community shifts and documented specific distribution patterns for each AMF species. AMF spores were morphologically identified and counted for each species. In total, 17,924 spores were classified and 106 AMF species were identified. In general, AMF species richness (SR) was higher in grasslands than in croplands. In croplands, SR increased with altitude but this trend was not observed in grasslands. Some species occurred at virtually all sites, while others were rarely detected, and for others, species-specific distribution patterns were revealed. Some species were affected by land use type or intensity, or related factors like soil organic matter, soil microbial biomass and respiration or nutrient availability. Other species were more affected by soil pH and related parameters like base saturation and carbonate contents, by soil texture, or by altitude, or by a combination of two to several of all these parameters. We conclude that a high number of AMF species may serve as indicator species for specific habitats and land use. These species might deliver certain ecosystem services at their habitats and deserve further investigation about their functional diversity.     

Assessment of the arbuscular mycorrhizal fungal community in roots and rhizosphere soils of Bt corn and their non-Bt isolines

Polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) in combination with sequencing of amplified partial 18S ribosomal DNA was used to assess the effects of transgenic Bt corn 5422Bt1 (event Bt 11) and 5422CBCL (event MON810) on the community structure of a non-target microorganism, namely the arbuscular mycorrhizal fungi (AMF) Glomus in corn roots and rhizosphere soils, relative to their non-Bt isolines 5422 (conventional parent) and 5422wx (conventional hybrid). AMF colonization in roots of different corn genotypes was also assessed using microscopic visualization. No adverse effect was detected on the indigenous AMF colonization of the roots of Bt hybrids 5422Bt1 and 5422CBCL. Two-way indicator species analysis (TWINSPAN^®) and detrended correspondence analysis (DCA) of the DGGE data from corn roots presented differences between Bt and non-Bt corn isolines (5422Bt1 vs. 5422wx, and 5422CBCL vs. 5422wx). However, differences were also recognized between the two non-Bt corn cultivars (5422 vs. 5422wx), and between the two Bt corn lines (5422Bt1 vs. 5422CBCL) in roots. Our results suggest that corn genotypes may have a greater influence on the AMF community structure of plant roots and rhizosphere soils than other factors, such as the age of the growing plants.     

Assessment of the arbuscular mycorrhizal fungal community in roots and rhizosphere soils of Bt corn and their non-Bt isolines

Polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) in combination with sequencing of amplified partial 18S ribosomal DNA was used to assess the effects of transgenic Bt corn 5422Bt1 (event Bt 11) and 5422CBCL (event MON810) on the community structure of a non-target microorganism, namely the arbuscular mycorrhizal fungi (AMF) Glomus in corn roots and rhizosphere soils, relative to their non-Bt isolines 5422 (conventional parent) and 5422wx (conventional hybrid). AMF colonization in roots of different corn genotypes was also assessed using microscopic visualization. No adverse effect was detected on the indigenous AMF colonization of the roots of Bt hybrids 5422Bt1 and 5422CBCL. Two-way indicator species analysis (TWINSPAN^®) and detrended correspondence analysis (DCA) of the DGGE data from corn roots presented differences between Bt and non-Bt corn isolines (5422Bt1 vs. 5422wx, and 5422CBCL vs. 5422wx). However, differences were also recognized between the two non-Bt corn cultivars (5422 vs. 5422wx), and between the two Bt corn lines (5422Bt1 vs. 5422CBCL) in roots. Our results suggest that corn genotypes may have a greater influence on the AMF community structure of plant roots and rhizosphere soils than other factors, such as the age of the growing plants.     

Influences of non-herbaceous biochar on arbuscular mycorrhizal fungal abundances in roots and soils: Results from growth-chamber and field experiments

Biochar holds promise as an amendment for soil quality improvement and sequestration of atmospheric carbon dioxide. However, knowledge of how biochar influences soil properties, especially soil microorganisms, is limited. Three separate studies were conducted, with two studies using Plantago lanceolata as the AMF hosting plant, and a third being conducted in the field. Each of the three studies employed a different soil type. Furthermore, a total of five different biochars, and ten different biochar application rates, were used across the three experiments. All experiments had the goal to examine biochar influences on arbuscular mycorrhizal fungal (AMF) abundance in roots and AMF abundance (hyphal lengths) in soils. AMF abundance was either decreased or remained unchanged across all biochar treatments. When AMF abundances decreased, significant changes in soil properties, primarily in soil P availability, were observed. Application of large quantities (2.0% and 4.0%, w/w) of a lodgepole pine biochar, led to significant declines in AMF abundance in roots of 58% and 73% respectively, but not in soils. These declines in AMF abundance were accompanied by significant declines (28% and 34%) in soil P availability. After addition of a peanut shell biochar produced at 360 °C, P increased by 101% while AMF root colonization and extraradical hyphal lengths deceased by 74% and 95% respectively. Field application of mango wood biochar at rates of 23.2 and 116.1 t C ha⁻¹ increased P availabilities by 163% and 208% respectively and decreased AMF abundances in soils by 43% and 77%. These findings may have implications for soil management where the goal is to increase the services provided by AMF.     

Ergosterol content in ericaceous hair roots correlates with dark septate endophytes but not with ericoid mycorrhizal colonization

The relationship between ergosterol content in ericaceous hair roots and ericoid mycorrhizal (ErM) colonization versus dark septate endophytic (DSE) hyphal colonization was examined in a dwarf shrub-dominated subarctic mire in Northern Sweden. Ergosterol content in hair roots did not correlate with ErM colonization in corresponding root samples. However, a significant positive relationship was found between hair root DSE hyphal colonization and ergosterol content. This is the first study to demonstrate that ergosterol cannot be used as a colonization indicator for ErM in hair roots growing under natural conditions. It also suggests the possibility of using ergosterol as an estimate of DSE hyphal colonization in ericaceous dwarf shrubs. This study has implications for the interpretation of results in field studies where ergosterol was used as a sole proxy for ErM colonization.     

Peach seedling growth in replant and non-replant soils after inoculation with arbuscular mycorrhizal fungi

The effect of pre-inoculation with arbuscular mycorrhizal fungi (AMF) on post-transplant growth of peach seedlings in replant and non-replant soils was studied for two successive seasons. Seedlings raised in sterile media and pre-inoculated with soil-based Gigaspora margarita inoculum were transplanted in replant and non-replant field soils alongside non-inoculated controls. Pre-inoculated seedlings transplanted in non-replant soils showed greater initial growth in the first year. Plant height, and lateral shoot length and number was highest in non-replant soils irrespective of mycorrhizal pre-inoculation. Similarly, biomass yield was significantly higher in seedlings in non-replant soils, though there were no significant differences in shoot/root ratios, and in tissue mineral content between and within treatments. Seedling infection by indigenous AMF was high in both replant and non-replant soils, and even non-inoculated seedlings recorded high infection levels after the first season. Generally, mycorrhizal activity was lower, and spore populations higher in replant soils, while the opposite was true in non-replant soils. It seems that soil sickness has a negative impact on plant metabolism and limits the capacity of the plant host to support the mycorrhizal symbiosis.     

Native soil organic matter as a decisive factor to determine the arbuscular mycorrhizal fungal community structure in contaminated soils

The present study of arbuscular mycorrhizal (AM) fungi is focused on the identification of AM ecotypes associated with different plants species (Poa annua, Medicago polymorpha, and Malva sylvestris) growing in three contaminated soils with different organic matter, phosphorus, and trace element (TE; Cu, Cd, Mn, and Zn) contents. Soils were amended with biosolid and alperujo compost. Shifts in AM fungal community structure, diversity, richness, root colonization, and plant TE uptake were evaluated. Soil properties and plant species had a significant effect on AM fungal community composition as well as on root colonization. However, AM fungal diversity and richness were only affected by soil properties and especially by soil organic matter that was a major driver of AM fungal community. As soil quality increased, Glomeraceae decreased in favor of Claroideoglomeraceae in the community, AM fungal diversity and richness increased, and root colonization decreased. No effect due to amendment (exogenous organic matter) addition was found either in AM fungal parameters measured or TE plant uptake. Our results revealed that the role of TE contamination was secondary for the fungal community behavior, being the native organic matter content the most significant factor.     

Ectomycorrhizal fungi and dark septate endophyte inoculation improve growth and tolerance of Pinus tabulaeformis under cadmium stress

Forest trees can establish symbiotic associations with dark septate endophytes (DSEs) and ectomycorrhizal fungi (ECMF) simultaneously. However, the combined effects of these two fungi on the growth and cadmium (Cd) tolerance of host plants remain largely unexplored. To address this knowledge gap, a pot experiment was conducted to examine the effects of the interaction between an ECMF strain (Suillus granulatus) and a DSE strain (Pseudopyrenochaeta sp.) on Pinus tabulaeformis under Cd stress, by assessing plant growth and physiological parameters, nutrient uptake, and soil properties. Notably, the colonization rates of both fungal strains were found to increase in response to Cd stress, with the extent of this increase being influenced by the specific fungal species and the Cd level in the soil. Compared to the non-inoculation treatment, single inoculation with fungal strain resulted in enhanced biomass, root development, and nutrient contents in P. tabulaeformis seedlings under Cd stress. Furthermore, a synergistic effect was observed when these seedlings were co-inoculated with S. granulatus and Pseudopyrenochaeta sp., as indicated by significantly greater measurements in various indicators compared to both the single and non-inoculation treatments. Fungal inoculation effectively regulated the antioxidant defense responses and photosynthesis of P. tabulaeformis seedlings subjected to Cd stress, particularly in the co-inoculation treatment. In addition, fungal inoculation facilitated the Cd accumulation in P. tabulaeformis, suggesting a promising potential for the implementation of bioremediation strategies in the areas contaminated with heavy metals. The findings from this study indicate that the utilization of root symbiotic fungi obtained from stress environments could potentially enhance the growth performance and tolerance of P. tabulaeformis towards heavy metals, and co-inoculation of both fungal groups may result in even more pronounced synergistic effects on the overall fitness of the plant.     

Interaction between earthworms and arbuscular mycorrhizal fungi on the degradation of oxytetracycline in soils

The interactive impact of earthworms (Eisenia fetida) and arbuscular mycorrhizal fungi (Rhizophagus intraradices, AM fungi) on the degradation of oxytetracycline (OTC) in soils was studied under greenhouse conditions. Treatments included maize plants inoculated vs. not inoculated with AM fungi and treated with or without earthworms at low (1 mg kg⁻¹ soil DM) or high (100 mg kg⁻¹ soil DM) OTC rates. The root colonization rate, the hyphal density of mycorrhizae, the residual OTC concentration in soils, catalase, dehydrogenase, urease, soil microbial biomass C, Shannon–Wiener index (H) for microbial communities from T-RFLP profiles were measured at harvest. The results indicated that earthworms and AM fungi would individually or interactively enhance OTC decomposition and significantly decreased the residual OTC concentration at both high and low OTC rates. Both earthworms and AM fungi could promote the degradation of OTC by increasing soil microbial biomass C at both high and low OTC rates. The effect of soil enzyme activity and soil microbial diversity on OTC decomposition was different between high and low OTC rates. Hyphomicrobium and Bacillus cereus were dominant bacteria, and Thielavia and Chaetomium were dominant phyla of fungi at all occasions. Earthworm activity stimulated the growth of Hyphomicrobium and Thielavia, while AM fungi may stimulate B. cereus, Thielavia and Chaetomium, resulting in greater OTC decomposition. The interaction between earthworms and AM fungi in affecting the degradation of OTC may be attributed to different mechanisms, depending on soil microbial biomass, function (enzyme activity) and communities (the abundance of Hyphomicrobium, B. cereus, Thielavia and Chaetomium) in the soil.     

Early effects of tillage and crop rotation on arbuscular mycorrhizal fungal propagules in an Ultisol

The aim of this work was to study the early influence of conventional tillage (CT) and no-tillage (NT) on arbuscular mycorrhizal fungal (AMF) propagules. A short 2-year-course crop rotation, i.e. trial consisting of a succession of wheat and oat, was studied in a typic Chilean Ultisol from the second to fourth year after the beginning of the experiment. Measurements included mycorrhizal characteristics and some soil properties in order to explain their influence on AMF propagules. Soil samples were taken yearly in autumn (fallow period) and in early spring (flowering). Significant differences in AMF hyphal length were observed between NT and CT in the first year, but such differences disappeared thereafter. No differences in metabolically active hyphae were obtained with wheat or oat under the two tillage systems. Mycorrhizal root colonization was always higher under NT than under CT. The number of AMF spores was also higher under NT than under CT, ranging from 158 to 641 spores per 100 cm³. Twenty-two AMF species including eight Glomus spp., six Acaulospora spp., four Scutellospora spp., one Archaeospora sp., one Diversispora sp., one Entrophospora sp. and one Pacispora sp. were observed in both agro-ecosystems. Higher spore number of Acaulospora spp. was found under wheat than under oat and under CT than under NT, whilst more spores of Scutellospora spp. were observed under NT than under CT. From all mycorrhizal characteristics, spore number could be visualized as an early and useful indicator of the effect of tillage systems on mycorrhizal propagules in short-term experiments.     

Soil type and land use intensity determine the composition of arbuscular mycorrhizal fungal communities

The objective of this study was to test whether soil types can be characterized by their arbuscular mycorrhizal fungal (AMF) communities. To answer this question, a well-defined study area in the temperate climatic zone of Central Europe was chosen with a large spectrum of soils and parent materials. Representative soil samples were taken from three soil types (Cambisol, Fluvisol and Leptosol) at in total 16 sites differing in agricultural land use intensity (9 grasslands and 7 arable lands). AMF spores were isolated and morphologically identified directly from field soils and after reproduction in trap cultures. AMF diversity and community composition strongly depended on soil type and land use intensity, and several AMF species were characteristic for a specific soil type or a specific land use type and hence had a specific niche. In contrast, other AM fungi could be considered as ‘generalists’ as they were present in each soil type investigated, irrespective of land use intensity. An estimated 53% of the 61 observed AMF species could be classified as ‘specialists’ as (almost) exclusively found in specific soil types and/or under specific land use intensities; 28% appeared to be ‘generalists’ and 19% could not be classified. Plant species compositions (either natural or planted) had only a subordinate influence on the AMF communities. In conclusion, land use intensity and soil type strongly affected AMF community composition as well as the presence and prevalence of many AM fungi. Future work should examine how the differences in AMF species compositions affect important ecosystem processes in different soils and to which extent the loss of specific groups of AM fungi affect soil quality.     

Community structure of arbuscular mycorrhizal fungi associated with Robinia pseudoacacia in uncontaminated and heavy metal contaminated soils

The significance of arbuscular mycorrhizal fungi (AMF) in soil remediation has been widely recognized because of their ability to promote plant growth and increase phytoremediation efficiency in heavy metal (HM) polluted soils by improving plant nutrient absorption and by influencing the fate of the metals in the plant and soil. However, the symbiotic functions of AMF in remediation of polluted soils depend on plant–fungus–soil combinations and are greatly influenced by environmental conditions. To better understand the adaptation of plants and the related mycorrhizae to extreme environmental conditions, AMF colonization, spore density and community structure were analyzed in roots or rhizosphere soils of Robinia pseudoacacia. Mycorrhization was compared between uncontaminated soil and heavy metal contaminated soil from a lead–zinc mining region of northwest China. Samples were analyzed by restriction fragment length polymorphism (RFLP) screening with AMF-specific primers (NS31 and AM1), and sequencing of rRNA small subunit (SSU). The phylogenetic analysis revealed 28 AMF group types, including six AMF families: Glomeraceae, Claroideoglomeraceae, Diversisporaceae, Acaulosporaceae, Pacisporaceae, and Gigasporaceae. Of all AMF group types, six (21%) were detected based on spore samples alone, four (14%) based on root samples alone, and five (18%) based on samples from root, soil and spore. Glo9 (Rhizophagus intraradices), Glo17 (Funneliformis mosseae) and Acau3 (Acaulospora sp.) were the three most abundant AMF group types in the current study. Soil Pb and Zn concentrations, pH, organic matter content, and phosphorus levels all showed significant correlations with the AMF species compositions in root and soil samples. Overall, the uncontaminated sites had higher species diversity than sites with heavy metal contamination. The study highlights the effects of different soil chemical parameters on AMF colonization, spore density and community structure in contaminated and uncontaminated sites. The tolerant AMF species isolated and identified from this study have potential for application in phytoremediation of heavy metal contaminated areas.     

Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: Is there a universal solution?

Different primer systems have been developed to characterize arbuscular mycorrhizal fungal (AMF) communities; however, a direct comparison of their specificity, potential to describe diversity and representation of different phylogenetic lineages is lacking. Using seven root samples, we compared four routinely used AMF-specific primer systems for nuclear ribosomal DNA covering i) the partial small subunit (SSU), ii) the partial large subunit (LSU), iii) the partial SSU and internal transcribed spacer (ITS; “Redecker”) and iv) the partial SSU–ITS–partial LSU region (“Krüger”). In addition, a new primer combination v) covering the ITS2 region (ITS2) was included in the comparison. The “Krüger” primers tended to yield the highest AMF diversity and showed a significantly higher Shannon diversity index than the SSU primers. We found a strong bias towards the Glomeraceae in the LSU and SSU primer systems and differences in the composition of AMF communities based on the “Redecker” primer system. Our results confirm the crucial role of the choice of target rRNA marker region for analysing AMF communities. We also provide evidence that nested-PCR based data can be interpreted semi-quantitatively and that the extent of observed AMF community overdominance largely depends on the choice of primer.     

Growth and interactions of arbuscular mycorrhizal fungi in soils from limestone and acid rock habitats

Arbuscular mycorrhizal (AM) development in different soil types, and the influence of AM fungal hyphae on their original soil were investigated. Plantago lanceolata, which can grow in soils of a very wide pH range, was grown in two closely related limestone soils and an acid soil from rock habitats. Plants were colonised by the indigenous AM fungal community. The use of compartmented systems allowed us to compare soil with and without mycorrhizal hyphae. Root colonisation of P. lanceolata was markedly higher in the limestone soils (30-60%) than in the acid soil (5-20%), both in the original habitat and in the experimental study. Growth of extraradical AM fungal hyphae was detected in the limestone soils, but not in the acid soil, using the signature fatty acid 16:1ω5 as biomass indicator. Analysis of signature fatty acids demonstrated an increased microbial biomass in the presence of AM fungal hyphae as judged for example from an increased amount of NLFA 16:0 with 30 nmol g⁻¹ in one of the limestone soils. Bacterial activity, but not soil phosphatase activity, was increased by around 25% in the presence of mycorrhizal hyphae in the first harvest of limestone soils. AM fungal hyphae can thus stimulate microorganisms. However, no effect of AM hyphae was observed on the soil pH or organic matter content in the limestone soils and the available P was not depleted.