Phylogenetic analysis for the Seoul National University (Minnesota) miniature pig by mitochondrial DNA sequence polymorphism

Seoul National University (SNU) miniature pigs are originated from the Minnesota miniature pig. This study was conducted to investigate the maternal origin of SNU (Minnesota) miniature pigs and their phylogenetic relationships by analyzing the mitochondrial DNA (mtDNA) D‐loop (control region) sequence. Two mtDNA D‐loop sequences of the SNU miniature pigs were identified. On an unweighted pair‐group method with an arithmetic mean (UPGMA) phylogenetic tree analysis, the large white was the pig breed closest to the SNU miniature pig, and the pairwise distance analysis showed the same result. While mtDNA sequences of 4 pig breeds which were used to establish Minnesota miniature pig were not known, our result might be different from the history of the Minnesota miniature pig development. In conclusion, we thought that some haplotypes of the Minnesota miniature pig maternally were originated from the Large white pig, or that wild pigs had similar mtDNA sequences to the Large white pig, and all SNU miniature pigs were derived from this colony.     

Molecular phylogenetic analysis of Theileria species detected from Japanese serows (Capricornis crispus) in Iwate Prefecture, Japan

In the present study, we tried to detect DNA for ribosomal RNA genes of piroplasma parasites from the liver or blood of 43 Japanese serows (Capricornis crispus) in Iwate Prefecture of Japan by polymerase chain reaction. Approximately 500-bp amplicons were obtained in 35 (81.4%) of the 43 samples by amplification for V4 hyper-variable regions of the 18S rRNA gene, and the amplicons were considered to be DNA of Theileria species. The complete nucleotide sequences (1,700 or 1709 bp) of the 18S rRNA gene were determined in 20 samples and were divided into 5 genotypes that were phylogenetically separated into two different lineages showing a polyphyletic relation. The Theileria DNAs of the two different lineages were considered to be those of distinct species.     

Dirofilaria immitis infection of a snow leopard (Uncia uncia) in a Japanese zoo with mitochondrial DNA analysis

Three dog heartworms (Dirofilaria immitis) were detected in the lumen of the right cardiac ventriculus and of the pulmonary artery of a captive female snow leopard (Uncia uncia) that died of pancreatic carcinoma at a zoo in Japan. Neither clinical respiratory nor circulatory symptoms caused by the heartworm infection were observed. The filarial worms were identified as D. immitis from the morphologic characteristics of the esophagus, the presence of faint longitudinal ridges on the cuticular surface, the situation of vulva posterior to the esophagus, and the measurements of the body. The heartworms from the snow leopard were identical to that of D. immitis from dogs in the sequence of the cytochrome oxidase I region in the mitochondrial DNA. This host record is the first of D. immitis in U. uncia.     

Detection and sequence analysis of DNA polymerase and major envelope protein genes in koi herpesviruses derived from Cyprinus carpio in Gunma prefecture, Japan

Koi herpesvirus (KHV), which is believed to be an emerging virus, causes fatal diseases in carps. Since the 1990s, the presence of KHV has been confirmed in several countries. In Japan, from 2003 to 2004, large outbreaks of KHV infection in farmed carps resulted in the death of numerous fishes. From April to May 2004, we collected 43 dead or dying carps exhibiting typical symptoms of KHV infection in Gunma prefecture. To conduct a molecular epidemiologic study of KHV in our prefecture, we amplified DNA polymerase and the major envelope protein genes of KHV derived from carp gills using newly designed primers. We also performed sequence analysis of both genes of KHV. Sensitivity of our PCR method for amplification of DNA polymerase and the major envelope protein genes of KHV was 3 x 10(2) (100 fg) and 3 x 10(3) (1000 fg) copies of KHV genome, respectively. We detected both DNA polymerase and major envelope protein genes in 37 of 43 carps (86%). No mutation was found in both the genes sequenced from 11 strains, which included two foreign strains and one domestic strain. The results suggested that KHV strains derived from carps in our prefecture were closely related genetically to the other KHV strains.     

斯氏副柔线虫线粒体CO1基因的克隆与序列分析

为研究斯氏副柔线虫(Parabronema skrjabini)种间遗传标记特点,从内蒙古地区骆驼皱胃中采集斯氏副柔线虫成虫,提取虫体DNA,利用线虫通用引物扩增细胞色素氧化酶1(CO1)基因,将其克隆到pMD19-T载体后,用PCR技术鉴定阳性菌落并进行测序,运用DNAStar 5.0和MEGA 4.0软件将测序结果与GenBank公布的相关线虫CO1序列进行比对分析。结果显示:斯氏副柔线虫DNA扩增出的CO1基因序列片段长度为689 bp。同其他相关属线虫CO1基因序列比对,斯氏副柔线虫与小口柔线虫(Habronema microstoma)、蝇柔线虫(Habronema muscae)的同源性最高,为86.7%,遗传距离为0.143;与加利西亚光丝虫(Litomosoides galizai)的同源性最低,为80.1%,遗传距离为0.229。通过两种不同方法建立的系统发育树比较,证实斯氏副柔线虫与柔线属线虫均位于同一分支,自展值都在47%以上。表明CO1基因不仅可以作为斯氏副柔线虫理想的种间遗传标记,也可为该线虫进一步的分子分类学研究提供重要基础。     

Cycle of the seminiferous epithelium in the Java fruit bat (Pteropus vampyrus) and the Japanese lesser horseshoe bat (Rhinolophus cornutus)

The cycle of the seminiferous epithelium in the Java fruit bat, Pteropus vampyrus, and the Japanese lesser horseshoe bat, Rhinolophus cornutus, was investigated by light microscopy and the characteristics of spermiogenesis were compared between these two species. In the Java fruit bat, the cycle of the seminiferous epithelium was divided into 11 stages and developing spermatids were subdivided into 13 steps. While in the Japanese lesser horseshoe bat, the cycle of the seminiferous epithelium was divided into 10 stages and developing spermatids were subdivided into 13 steps. Excepting slight morphological differences, the characteristics of acrosomal formation in both species were almost similar with each other. In the Java fruit bat after stage VII, the acrosome gradually elongated, flattened and finally became scoop-like in shape. In the Japanese lesser horseshoe bat after stage VIII, the acrosome elongated, flattened and then slightly shortened. Before spermiation, the acrosome became long spatula-like in shape. The elongation and flattening of spermatids in these two species were similar to those in insectivores. The finding may reflect the fact that the order Chiroptera is phylogenetically close to the order Insectivora.     

Primary analysis of DNA polymorphisms in the TRIM region (MHC subregion) of the Japanese quail,Coturnix japonica

Based on sequences of two cosmid clones from Japanese quail (Coturnix japonica, Coja), we confirmed that the syntenic cluster, GNB2L1～BTN1～BTN2, is located in the quail TRIM subregion of the quail major histocompatibility complex (MHC Coja) region. These cosmids also included four CjBG loci and one CjLEC locus; therefore, the quail TRIM subregion was thought to be adjacent to the BG/LEC subregion. We then identified three polymorphic markers – CjHEP21, CjTRIM39.2 and CjBTN2 – in the TRIM subregion that may be useful for the functional analysis of the MHC‐Coja region. We examined MHC‐Coja sequences from 321 individual quails sampled from 11 inbred strains, and we found eight alleles for each of the three genes – CjHEP21, CjTRIM39.2 and CjBTN2. These polymorphisms represent the first avian DNA markers in the TRIM subregion. Additionally, we discovered a quail‐specific VNTR (variable number of long tandem repeats, 133–137 bp) in intron 7 of CjBTN2. We identified 25 haplotypes in the sample of 321 quail; these haplotypes comprised combinations of all 24 alleles of the three polymorphic genes. We suggest that there are two recombination hotspots, one between each pair of adjacent loci. All strains, except AMRP, contained multiple haplotypes; the AMRP strain contained a single, apparently fixed haplotype.     

Detection of Ehrlichia muris DNA from sika deer (Cervus nippon yesoensis) in Hokkaido, Japan

Ehrlichia muris DNA was detected in the blood of sika deer (Cervus nippon yesoensis) by species-specific PCR based on the citrate synthase gene, which was shown to be more sensitive than species-specific PCR based on the 16S rRNA gene. Among 102 deer examined, one deer was positive. Deer may be a possible mammalian reservoir of E. muris.     

Isolation and genetic analysis of Japanese encephalitis virus from a diseased horse in Japan

Japanese encephalitis (JE) developed in an unvaccinated half-bred horse kept in Tottori Prefecture, Japan. The animal showed ataxia with pyrexia and low appetite, and ultimately died. A viral strain was isolated from the cerebrum of the horse and was identified as JE virus (JEV) by RT-PCR using JEV specific primers. The isolated JEV was classified into genotype I by nucleotide sequence analysis of the viral envelope gene. We believe that this is the first report of the genotype I strain being isolated from a horse.     

Two Eimeria species isolated from wild Japanese rock ptarmigans (Lagopus mutus japonicus) in Japan

Fecal samples were collected from 64 Japanese rock ptarmigans (Lagopus mutus japonicus) at 13 locations in the alpine zone of Japan and examined for internal parasites. We found 2 morphologically different types of eimerian oocysts. Based on morphological characteristics, one was identified as Eimeria uekii, which had already been found from Japanese rock ptarmigans in 1981, and the other was likely a new type of Eimeria. The new type of eimerian oocysts required a longer sporulation time than E. uekii. The prevalence of both eimerian oocysts in Japanese rock ptarmigans was 62.5%, while that of E. uekii was 60.9% and the new type 29.7%. Mixed infection of both types was found in 28.1%.     

Initiatives and behavioral sequence of maternal behavior in Japanese Black and Japanese Shorthorn cattle (Bos taurus)

Maternal grooming (MG), nursing (NS) and mother‐infant behavior 5 min before (IB5) and immediately before (LIB) maternal behavior were observed in Japanese Black (JB) and Japanese Shorthorn (JS) cow‐calf pairs. During MG of the JB, the number of calf's IB5 was more than that of cows, but the duration of the MG positively correlated with the number of cow's IB5. During MG of the JS, the duration positively correlated with the number of calf's IB5. The number of the NS with calf's LIB and the number of calf's IB5 in the NS were more than those of cows in both breeds. The duration of the NS tended to correlate with the number of calf's IB5 in the JS. Main behavior sequence was observed like cow's approach, MG, calf's contact and NS, in this order, in both breeds. It is thought that the MG is released by cow's and calf's activities in both breeds and accelerated by the cow's activeness in the JB and by the calf's activeness in the JS, and that the NS is released and accelerated by the calf's activeness in JS.     

金荞麦查尔酮合成酶基因CHS的克隆及序列分析

采用同源克隆的方法获得金荞麦查尔酮合成酶基因(CHS)的保守片段554 bp,进一步采用染色体步移法(genome-walking)和RT-PCR技术克隆到CHS基因的全长DNA序列和cDNA开放阅读框(ORF)序列.序列分析结果表明,金荞麦CHS基因DNA全长1 650 bp,含一个462 bp的内含子;其cDNA编码区全长1 188 bp,编码395个氨基酸,命名为FdCHS,NCBI登录号为GU169470.该氨基酸序列与同为蓼科的掌叶大黄、虎杖CHS的氨基酸序列同源率分别达到94%和93%,且含有CHS活性位点和底物结合口袋位点等保守位点.     

金荞麦查尔酮合成酶基因CHS的克隆及序列分析

采用同源克隆的方法获得金荞麦查尔酮合成酶基因(CHS)的保守片段554bp,进一步采用染色体步移法(genome-walking)和RT-PCR技术克隆到CHS基因的全长DNA序列和cDNA开放阅读框(ORF)序列。序列分析结果表明,金荞麦CHS基因DNA全长1650bp,含一个462bp的内含子;其cDNA编码区全长1188bp,编码395个氨基酸,命名为FdCHS,NCBI登录号为GU169470。该氨基酸序列与同为蓼科的掌叶大黄、虎杖CHS的氨基酸序列同源率分别达到94%和93%,且含有CHS活性位点和底物结合口袋位点等保守位点。     

Fecal steroid analysis for evaluating ovarian function in the greater kudu (Tragelaphus strepsiceros) and lesser kudu (Tragelaphus imberbis)

Seasonal reproductive-endocrine norms have not been described for the genus Tragelaphus, which consists of seven species of African antelope. Longitudinal patterns of progesterone metabolite excretion were assessed by radioimmunoassays in fecal samples collected noninvasively (three to seven samples per week) from greater kudu (Tragelaphus strepsiceros, n = 4) and lesser kudu (Tragelaphus imberbis, n = 4). Progesterone metabolite excretion patterns revealed seasonal estrous cycles in both species, and discrimination of pregnant versus nonpregnant females was achieved in lesser kudu. These data reveal the value of fecal progesterone metabolites for establishing reproductive-endocrine norms in both zoo-maintained and free-living antelopes of the genus Tragelaphus.     

Phylogenetic relationships of rodent pinworms (genus Syphacia) in Japan inferred from mitochondrial CO1 gene sequences

Species of the genus Syphacia are considered to have generally co-evolved with their rodent hosts. This study determined partial sequences of the CO1 gene from several species in the genus Syphacia and discuss the relationships between pinworms and their hosts. Syphacia montana, which parasitizes Microtinae, was closely related to S. frederici and S. obvelata, which parasitize Murinae. Although both S. obvelata and S. ohtaorum parasitize rodents in the genus Mus, these two species were not found to be closely related to each other. Syphacia frederici, S. emileromani and S. agraria are all pinworms of the Apodemus species, but genetic affiliation between these three species was not indicated. These facts suggest that the co-evolutionary relationship between species of the genus Syphacia and their host rodents may not so strict and host switching has probably occurred during the course of evolution.     

Molecular analysis of aspermic Fasciola flukes from Korea on the basis of the nuclear ITS1 region and mitochondrial DNA markers and comparison with Japanese aspermic Fasciola flukes

It has been speculated that populations of aspermic Fasciola flukes in Korea and Japan have a close phylogenetic relationship. To evaluate this, we analyzed 33 Korean aspermic Fasciola flukes on the basis of nuclear ribosomal internal transcribed spacer 1 (ITS1) and mitochondrial NADH dehydrogenase subunit 1 (nad1) and cytochrome c oxidase 1 (cox1) sequences. Fh, Fg, and Fh/Fg types were detected in the ITS1 region and displayed the fragment patterns of F. hepatica, F. gigantica, and both species, respectively by a polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method. Additionally, three concatenated haplotypes of nad1 and cox1(nad1/cox1) were detected, and 2 of these, Kor1/Kor1 (Fsp1/Fsp1) haplotype and Kor2a/Kor2 (Fsp2/Fsp2) haplotype, were shared by Korean and Japanese aspermic flukes. The Fst value (0.019), calculated using the concatenated sequences, indicated that Korean and Japanese aspermic Fasciola populations were genetically undifferentiated. Interestingly, a combination of the Fh/Fg type and Kor1/Kor1 haplotype was found at the highest frequency in Korean aspermic flukes, whereas the Fg type and Fsp2/Fsp2 haplotype combination was found at a conspicuously high frequency in Japanese aspermic flukes. This indicates that a founder effect caused by the introduction of infected hosts may have played a key role in the introduction of aspermic Fasciola flukes from Korea into Japan.     

Size and Shape Variability in the Skull of the Bottlenose Dolphin,Tursiops truncatus (Montagu, 1821)

The bottlenose dolphin (Tursiops truncatus) is a widely spread cetacean species. We present a quantitative analysis of age dimorphism variation in the skull of T. truncatus assessed by geometric morphometrics (GM) methods. Differences in size and shape of skulls were investigated using eight landmarks plotted on 2‐D images of ventral views of 14 museum specimens. The results of GM revealed differences in size, but not in shape. The left side appears more variable, which is probably an effect of telescoping.     

我国片形吸虫线粒体NADH脱氢酶亚单位1基因(nad1)多态性的研究

用γ^33P对引物进行标记，首次对来自国内不同地区、不同宿主的片形吸虫线粒体烟酰胺腺嘌呤二核苷酸(NADH)脱氢酶亚单位Ⅰ基因部分序列(pnad1)进行PCR扩增及DNA单链构象多态性(PCR-SSCP)分析，结果76个虫体均成功地扩增出约200bp的基因片段；76个样品经过PCR-SSCP分析后，筛选出11个代表性样品进行测序。测序结果显示我国片形吸虫pnad1序列种间差异大于种内变异，表明nad1序列可以作为片形吸虫种内和种间遗传多态性研究的标记。     

Mitochondrial DNA variation in the Japanese marten Martes melampus and Japanese sable, Martes zibellina

Genetic relationship among Japanese sables, Martes zibellina and the introduced Japanese martens, Martes melampus in northern Japan was revealed by analyzing a 521-524bp DNA sequence from the cytochrome b (112bp)/transfer RNA-threonine (67bp)/tRNA-proline (65bp) and control region (277-280bp) of the mitochondrial genome. Intraspecific differences in sequences of M. zibellina and M. melampus (3.8-15.0% and 1.9-16.4%, respectively) were similar to interspecific differences between these two species (5.8-16.6%). Comparison of sequence data exhibited five haplotypes of M. melampus and four haplotypes of M. zibellina, which clustered into two groups (clusters-A and-B). Cluster-A included two haplotypes of M. melampus and two haplotypes of M. zibellina, whereas cluster-B included three haplotypes of M. melampus and two haplotypes of M. zibellina. Results of this study lead three possible explanations. Firstly, past hybridization between M. zibellina and M. melampus might have occurred. Secondary, these two species might have similar heteroplasmy of mtDNA. Thirdly, these haplotypes might have come from nuclear genome. Although further intensive studies are needed to make a conclusion, detection of hybridization with the Japanese marten are occurred or not is quite important to conserve the Japanese sable.