Environmental DNA as a monitoring tool for the endangered freshwater pearl mussel (Margaritifera margaritifera L.): a substitute for classical monitoring approaches?

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高盐胁迫下大弹涂鱼MHC Iα基因对病毒拟似物poly(I:C)的免疫反应

主要组织相容性复合体(major histocompatibility complex, MHC)是一类编码细胞表面糖蛋白的基因,在所有硬骨鱼的适应性免疫系统中起着至关重要的作用,而关于 MHC 基因的研究一直是鱼类分子免疫学和鱼类抗病辅助育种的研究热点之一。本研究首次分析了大弹涂鱼(Boleophthalmus pectinirostris) MHC Iα基因的 cDNA 序列特征,构建了系统发生树,评估了大弹涂鱼 MHC Iα基因 mRNA在健康个体不同组织中的表达差异,研究了注射病毒拟似物 poly(I:C)后 MHC Iα基因在机体主要免疫器官肝和脾的表达情况。结果显示,大弹涂鱼 MHC Iα基因具有由1101 个碱基组成的开放阅读框(ORF),共编码 366 个氨基酸残基,具有 3 个蛋白激酶 C-磷酸化位点、1 个酪蛋白激酶Ⅱ磷酸化位点和 1 个 N-糖基化位点。系统发育分析显示与大弹涂鱼 MHC Iα基因亲缘关系最密切的是河川沙塘鳢(Odontobutis potamophila)。RT-PCR 分析显示, MHC Iα基因 mRNA 在不同组织中均有表达,其中肾和脾组织中表达量最高,鳃和肠组织中表达次之。大弹涂鱼在腹腔注射 poly(I:C)后,肝和脾组织中 mRNA 表达量明显上升,在12 h 时, MHC Iα基因 mRNA 表达量在肝和脾中均达到峰值。本研究结果表明, MHC Iα基因参与了大弹涂鱼在高盐胁迫下的免疫应答。     

Experimental deepwater culture of the Sydney rock oyster (Crassostrea commercialis=Saccostrea cucullata): I. Growth of vertical clumps of oysters (‘ren’)

Japanese style ren, consisting of scallop shells encrusted with small Sydney rock oysters and strung on vertical wires, were grown at 23 estuarine stations along the New South Wales coast for up to 21 months. Weight increments of ren were used to evaluate growth rates of oysters in non-cumulative (3–4 months immersion) and cumulative (6–21 months immersion) series. Oyster weight increased at a rate of approximately 10% per month, which was considered suitable for commercial production, but estimated labour costs to make up the ren were high. Mortality rate was 6.3% per 3–4 months immersion. Gaping oysters, through natural mortality, winter mortality, the haplosporidian parasite Marteilia sydneyi, and other causes, accounted for 4.5%. Broken oysters, resulting from fish and crab predation, accounted for 1.8%. Mortality caused by the polychaete mudworm Polydora websteri was negligible; only 1.7% of the 4.5% gapers showed the characteristic blisters.     

Possible use of Brachionus plicatilis (O.F. Müller) as food for freshwater cyprinid larvae

The use of the euryhaline rotifer Brachionus plicatilis as food in raising freshwater fish larvae was tested with the Japanese ornamental carp, koi (Cyprinus carpio) and a breed of bait fish (Carassius sp.).Providing rotifers in addition to granulated food improved significantly the growth rate of fish larvae and also, in the case of ornamental koi, their survival. Growth rate in terms of increase in length was found to fit a simple empirical formula similar to a power growth curve. The curve fits results obtained with bait fish (R²=0.85) better than those with Japanese koi (R²=0.76). The coefficients of growth for each treatment (β_i) were used to evaluate the contribution of rotifers to the larval growth. The improvement in growth was found to correlate with the quantity of rotifers, being higher with the larger quantity offered (2400 larva⁻¹ day⁻¹). In bait larvae, results obtained from measuring length were supported in weight measurements taken on day 8, but not by those recorded on day 11. Between day 8 and day 11, these larvae were fed on granulated food only.Preliminary results indicate that yeast-fed rotifers were superior to algae-fed ones when supplied to bait fish larvae in equal quantities, in addition to granulated food.     

Fatty acids as a tool to compare cachara (Pseudoplatystoma reticulatum) (Siluriformes: Pimelodidae) and hybrid (Pseudoplatystoma corruscans?×?Pseudoplatystoma reticulatum) larvae during early development

In this study, we investigated the physiological alterations during ontogeny for cachara (Pseudoplatystoma reticulatum) and their hybrid larvae (Pseudoplatystoma corruscans?×?P. reticulatum) using lipids and fatty acids as physiological tools to elucidate the basis for differences in these groups?? productivity in an industrial setting. Eggs and larvae samples were collected during January and February of 2008 in the city of Bandeirantes, MS, and were divided into three primary phases: phase I (0?C16?h after fertilization); phase II (24?h after fertilization to 6?days after fertilization); and phase III (7?C25?days after fertilization). The larvae of both groups showed a high degree of similarity, suggesting that the hybrid larvae showed a high level of heritability from the cachara broodstock. Analysis of the total lipid content provided evidence that there is no alteration in lipid concentration during ontogeny for both groups (i.e., the cachara and hybrids). However, the fatty acid profile showed that during the endogenous feeding period (phase II), when the larvae must use the energy reserves from the mother, the cachara larvae used mainly monounsaturated fatty acids for development. This is typical for most fish species, though notably, the hybrids preferentially used saturated fatty acids. Furthermore, certain specific changes demonstrate unique patterns of energy utilization and structural substrates, which may aid in elucidating the empirical differences reported by fish farmers (i.e., that the hybrids perform better than cacharas in captivity).     

Unicellular algae as a food for turbot (Scophthalmus maximus L.) larvae — The importance of dietary long-chain polyunsaturated fatty acids

The production of juvenile turbot in research and commercial practice still involves the use of live foods for the early larvae. The rotifer Brachionus plicatilis is used for the first few days followed by nauplii of the brine shrimp, Artemia salina. During this live food phase, the addition of live unicellular algae to the rearing tanks improves the growth and survival of the turbot larvae.Within 10 days of the start of feeding, large differences in growth rate become apparent depending on the presence or absence of particular algae. The use of Dunaliella tertiolecta in particular results in stunted growth and high mortalities. Evidence is presented in this paper that Dunaliella tertiolecta is not toxic, and that its failure to support turbot larval growth is probably due to a deficiency of long-chain polyunsaturated fatty acids. These compounds have been shown by other workers to be an essential dietary requirement in O-group turbot.     

Metazoan parasites of the stomach of Dissostichus eleginoides Smitt 1898 (Pisces: Notothenidae) from southern Chile: A tool for stock discrimination?

The taxonomic composition of the metazoan parasites found in the stomach of 629 specimens of the “Patagonian toothfish” Dissostichus eleginoides Smitt, 1898, from two localities in southern Chile (Lebu 36°00′S; Quellón 48°49′S), is recorded. More than 58,000 parasite specimens belonging to 9 taxa were registered. Adult worms were represented by the hemiurids Gonocerca phycidis Manter 1925, Lecithochirium genypteri Luhe 1905, Brachyphallus crenatus (Rudolphi 1802), and Derogenes varicus (Muller 1784) and the nematode Hysterothylacium sp. Ward & Magath 1917. Larval forms of anisakid nematodes, an acanthocephalan (Corynosoma sp.), a trypanorhynch cestode (Hepatoxylon trichiuri (Holten 1802)) and an unidentified pseudophyllidean cestode were also obtained. Parasitological evidence, based on univariate and multivariate analysis, does not support either the existence of discrete stocks, migratory movements between areas or seasonality in pattern of infection.     

SHORT COMMUNICATION: Group ‘resting’ behaviour in a population of captive bull huss (Scyliorhinus stellaris)

Captive bull huss, Scyliorhinus stellaris (L.), rest in groups more often than alone. These groups are of fluid composition, suggesting that there is no special need to maintain group membership when translocating animals.This revised version was published online in October 2005 with corrections to the Cover Date.     

An enzyme linked immunosorbant assay (ELISA) for testosterone, estradiol, and 17,20β-dihydroxy-4-pregenen-3-one using acetylcholinesterase as tracer: application to measurement of diel patterns in rainbow trout (Oncorhynchus mykiss)

A simple and rapid Enzyme Linked ImmunoSorbant Assay (ELISA) is described and validated for testosterone, estradiol, and 17,20-dihydroxy-4-pregnen-3-one (17,20P). A general procedure for preparation of the acetylcholinesterase labeled steroid is described which is applicable to any steroid. Use of acetylcholinesterase tracer increased the sensitivity of assay so that reliable measurements of each steroid could be achieved with only 10 l of plasma. The ELISA was applied to measurement of all three steroids every hour for over 24 hours in a female trout using cannulation of the dorsal aorta. This high sampling frequency revealed several short-term (<2 h) episodic pulses of testosterone and estradiol.     

Responses of scallop biodeposits to bioturbation by a deposit‐feeder Apostichopus japonicus (Echinodermata: Holothuroidea): does the holothurian density matter?

The deposit‐feeding holothurians can reduce the negative impact of bivalve farming by feeding and reworking bivalve wastes (biodeposits) in the context of co‐culture. To test effects of the bioturbation by holothurians of different densities on bivalve wastes, a stocking density regime of the sea cucumber Apostichopus japonicus (35.4 ± 1.2 g, mean ± SE) was set at 0.0, 6.6, 13.2 ind m^?2, and responses of the biotic parameters including chlorophyll a concentration (Chl. a), bacterial biomass and the abiotic ones as oxidation‐reduction potential (ORP), organic matter (OM), organic carbon (OC), total nitrogen (TN) and organic phosphorus (OP) in biodeposits discharged by Japanese scallop Patinopecten yessoensis were investigated. Results showed that A. japonicus grew in a density‐dependent manner, and the density‐dependent effect on both biotic and abiotic parameters in biodeposits were also observed. Apostichopus japonicus stimulated a transfer process from reduction to weak reduction state of the biodeposits with a trend of higher density holothurians stimulating the process more. Furthermore, A. japonicus significantly controlled the bacterial abundance and Chl. a, as well as reducing the contents of OM, OC, TN and OP in the biodeposits. Yet, the response of abiotic parameters delayed rather than that of biotic parameters, underling the biotic parameters could be more sensitive to bioturbation than the abiotic ones. Our study suggests that the bioturbation of A. japonicus plays an important role in retarding organic waste accumulation and cleansing nutrients in bivalve farming wastes under co‐culture condition and the bioremediation capacity may be closely dependent on its stocking density in practice.     

Evaluation of interferon gamma (IFN-γ) of <Emphasis Type="Italic">Labeo rohita</Emphasis> as an immunomodulator: in vitro expression model

Interferon gamma (IFN-γ) or type II interferon is a cytokine that is critical for innate and adaptive immunity against viral and some bacterial and protozoal infections. The importance of IFN-γ in the immune system lies in its ability to inhibit viral replication directly and most importantly from its immunomodulatory effects. Previously, we successfully co-administered IFN-γ along with GAPDH gene of Edwardsiella tarda as bicistronic DNA vaccine in Labeo rohita. In order to ascertain the individual role of IFN-γ, the present study involves cloning and expression of 552-bp IFN-γ open-reading frame (ORF) of L. rohita in striped snakehead (SSN-1) cell line using eukaryotic expression vector system (pQE-TriSystem) followed by transfection in peripheral blood lymphocytes (PBMCs) to evaluate its immunomodulatory ability in comparison to polyinosinic-polycytidylic acid (Poly I:C)-treated PBMCs. The 18.7-kDa protein, expressed in the pQE-IFNγ-transfected SSN-1 cells, reacted with anti-His antibody in Western blot confirming it to be recombinant IFN-γ, whereas the relative expression of IFN-γ, iNOS, Mx, and IL-1β genes in PBMCs was quantified at 24 h and 48 h post treatment by qPCR. The comparative kinetics of all four genes showed significantly (p?<?0.05) high upregulation pattern in both pQE-IFNγ-transfected cell group and Poly I:C-treated cell group demonstrating recombinant IFN-γ as an equally efficient inducer like Poly I:C. Thus, our in vitro experiment results highlight the immunomodulatory potential of recombinant IFN-γ as an analogue to synthetic Poly I:C which warranted future studies to further explore the potential of recombinant IFN-γ as an effective vaccine adjuvant against different microbial invasion.     

Microbiological aspects of common carp (<Emphasis Type="Italic">Cyprinus carpio</Emphasis>) and its processing—relevance for final product quality: a review

The aquaculture production of common carp (Cyprinus carpio) is one of the biggest on a global scale, although European production represents a minor part. Thus, common carp is a little-exploited, low-cost, and highly nutritious food source. For development of new quality products that have customers’ appeal and are safe, a combination of traditional and novel technologies can be used. However, good quality raw material is of basic importance for further processing and final product quality. Fish microbiota have a major role in fish spoilage and as potential human pathogens. To diminish the negative impact of the microbiota on fish, different methods and technologies can be used. The important steps before the final product processing in the production of common carp products include purging, transport, pre-slaughter storage, slaughter method, bleeding, cleaning, desliming, descaling, and gutting. The most important factor in fish spoilage prevention is chilling, although to assure longer freshness and shelf-life, the concept of hurdle technology should be used. Many preservation and packaging techniques have been developed for fish products, but not all have been researched for common carp products. This review aims to identify the gaps in research, knowledge, and practice for the microbiological aspects that impact upon the production of high-quality common carp food products.     

Comparison of the Channel Catfish,Ictalurus punctatus (NWAC103 Strain) and the Channel × Blue Catfish,I. punctatus × I.furcatus,F1 Hybrid for Growth,Feed Efficiency,Processing Yield,and Body Composition

Abstract

A pond trial was conducted to compare growth, feed efficiency, survival, processing yield, and body composition of the NWAC103 strain of channel catfish, Ictalurus punctatus and the F₁ channel X blue catfish hybrid (CB hybrid), I. punctatus X I. furcatus. Each genotype was stocked into five 0.4-ha earthen ponds at a rate of 14,820 fish/ha. Initial weights were 24.9 and 31.8 g/fish for the NWAC103 strain of channel catfish and the CB hybrid, respectively. Fish were fed a commercial, 28% protein diet once daily to satiation for 160 days. Compared to NWAC103 channel catfish, the CB hybrid consumed more diet, gained more weight, converted diet more efficiently, and had higher net production, survival, carcass yield, nugget yield, visceral fat, fillet moisture and protein, and a lower level of fillet fat. There were no differences in fillet yield and fillet ash concentration between the channel X blue catfish hybrid and the channel catfish. These results suggest that the CB hybrid possesses superior production traits compared with the NWAC103 channel catfish. However, problems of producing a large number of hybrid fingerlings in a cost-effective manner remain to be resolved before the hybrid catfish can be commercially farmed.     

Development of a zero water discharge (ZWD)—Recirculating aquaculture system (RAS) hybrid system for super intensive white shrimp (Litopenaeus vannamei) culture under low salinity conditions and its industrial trial in commercial shrimp urban farming in Gresik,East Java,Indonesia

This study aims to develop a hybrid zero water discharge (ZWD) - recirculating aquaculture system (RAS) system to improve water quality, as well as the growth, survival, and productivity, of the super-intensive white shrimp culture under low salinity conditions at semi-mass and the industrial level. The study consisted of two parts: (1) a semi-mass trial for the optimization of shrimp production using a hybrid ZWD-RAS system with a total volume of 2.7 m³ at the different shrimp stocking densities of 500 PL/m³, 750 PL/m³, and 1,000 PL/m³ and (2) an industrial trial at a commercial shrimp urban farming facility in Gresik, East Java, with total volume of 110 m³ at the optimum shrimp stocking density from the semi-mass trial. Both the semi-mass and industrial trials were performed in five steps: (1) preparation and installation of the RAS and ZWD system components; (2) preparation of microbial components including nitrifying bacteria, the microalgae Chaetoceros muelleri, and the probiotic heterotrophic bacteria Bacillus megaterium; (3) acclimatization of white shrimp post larvae from the salinity level of 32 ppt to 5 ppt; (4) conditioning of the biofilter used in the RAS and shrimp tank (microbial loop manipulation in ZWD); and (5) shrimp grow-out rearing for 84 days and 60 days for the semi-mass trial and the industrial trial, respectively. The hybrid system combined a ZWD system and an RAS. Shrimp tanks were conditioned with the addition of microbial components for ZWD at the beginning of the culture period. The RAS was operated when NH₄⁺ and NO₂⁻-N levels in shrimp culture reached above 1 ppm until the levels decreased to 0–0.5 ppm. The culture performance in the semi-mass trial at 500 PL/m³, 750 PL/m³, and 1,000 PL/m³ stocking densities was not significantly different for final mean body weight (12.06 ± 5.72, 11.84 ± 3.58, 12.04 ± 3.71 g/ind, respectively) and productivity (4.205 ± 0.071, 4.691 ± 0.025, 4.816 ± 0.129 kg/m³, respectively). Significant differences in survival (70 ± 7%, 53 ± 3%, 40 ± 4%, respectively) and feed conversion ratios (1.54 ± 0.01, 1.82 ± 0.00, 2.16 ± 0.03, respectively) were observed between the three different stocking densities. Water quality parameters and microbial loads during the semi-mass trial were similar for all stocking densities and were within the tolerance levels for white shrimp grow-out production. The results of the semi-mass trial showed that the hybrid ZWD-RAS system can maintain water quality and a microbial load up to a 1,000 PL/m³ stocking density; however, the optimum performance based on survival, feed conversion ratio, and productivity was reached at the 500 PL/m³ stocking density. The industrial trial of the application of the hybrid ZWD-RAS system using the optimal stocking density of 500 PL/m³ resulted in a comparable shrimp survival of 78% with a total production of 298 kg shrimp biomass (equal to a productivity level of 2.7 kg/m³). The overall results of both the semi-mass and industrial trials showed that the application of a hybrid ZWD-RAS system allows optimal shrimp survival and growth at the stocking density of 500 PL/m³ and has high potential for application in commercial shrimp grow-out production at low salinity levels.     

Could artificial structures such as fish passes facilitate the establishment and spread of the ‘killer shrimp’ Dikerogammarus villosus (Crustacea: Amphipoda) in river systems?

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Erratum to: I. M. Suthers and D. Rissik (eds): Plankton: A guide to their ecology and monitoring for water quality CSIRO Publishing, Collingwood, Australia, 2009, XVI + 256pp., ￡30 (Paperback), ISBN: 9780643090583 (Distributed by eurospan@turpin-distribution.com)

Compensatory growth refers to an animal’s ability to grow extremely rapidly after it has experienced a period of reduced growth. It is also widely held that the growth trajectories of animals showing compensatory growth converge towards those followed by conspecifics that have experienced favorable growth conditions throughout their lives. In other words, it is often assumed that animals undergoing compensatory growth also show some recovery, and thereby exhibit catch-up growth. This belief has resulted in the terms compensatory growth, recovery growth, and catch-up growth being used as synonyms, and has also created some problems with regard to data analysis and interpretation. Following a discussion of methods of analysis and their limitations, a series of growth simulations is presented to illustrate why the terms should not be used as synonyms. The simulations, based upon the assumption that compensatory growth results in a restoration of body composition (using condition index as a surrogate), show that compensatory growth is not always accompanied by a convergence of growth trajectories. Compensatory growth can occur in the absence of catch-up growth, and the simultaneous observation of compensatory growth and a recovery of body mass is a special combination of events. Further, it is possible for growth trajectories to converge even when animals that have experienced a period of reduced growth do not display compensatory growth. Definitions are proposed that distinguish between the terms compensatory growth, recovery growth, and catch-up growth, and guidelines are given relating to the analysis of the results of fish compensatory growth studies.     

The relevance of preserving temporary ponds during drought: hydrological and vegetation changes over a 16-year period in the Doñana National Park (south-west Spain)

• 1. Although the Doñana National Park is given the highest degree of environmental protection in Spain, it is likely that groundwater discharge to several ponds within the Biological Reserve has been damaged by abstraction to a tourist resort located less than 1 km away.
• 2. Hydrological changes were monitored over 16 years (1 October 1989 to 30 September 2005) by recording the shallow water table of six temporary ponds at 1–8-week intervals, and the duration of pond wet phase (or hydroperiod) during each hydrological cycle.
• 3. The average rainfall for the study period was 563.2 mm, and included 6 wet, 5 moderate, and 5 dry years in a seemingly random sequence. The average rainy season extended from October until the end of March, while the dry season occupied the rest of the year.
• 4. The water table generally oscillated following this alternation of rainy and dry seasons, but this fluctuation was minimal during dry years, and even failed to occur at some ponds.
• 5. Since 1998/99, the average hydroperiod has shortened by 3 months at Charco del Toro pond, and by almost 2 months at Brezo pond, while the rest of the ponds exhibited a reduction of less than 1 month.
• 6. Vegetation changed in the ponds between May 1990 and 2005. Total plant cover increased (range of increase: 16–65%), and species richness decreased in all ponds (range of species loss: 4–18).
• 7. The reduction in the hydroperiod probably enhanced the growth of a few woody plants to the detriment of flooding-dependent species as the cover of Pinus pinea increased nearly fourfold at Brezo pond, while that of Scirpus lacustris was halved at Charco del Toro pond.
• 8. The pumping area for the nearby tourist resort should be relocated, and a specific management strategy should be developed in order to prevent further damage to the ponds.

Copyright © 2007 John Wiley & Sons, Ltd.