Characterizing Zebra Chip Symptom Severity and Identifying Spectral Signatures Associated with ‘<Emphasis Type="Italic">Candidatus</Emphasis> Liberibacter solanacearum’-Infected Potato Tubers

Zebra chip (ZC) disease has been a threat to the US potato industry for nearly two decades. ZC is associated with the bacteria ‘Candidatus Liberibacter solanacearum’ (Lso), which is transmitted by the potato psyllid, Bactericera cockerelli (?ulc) (Hemiptera: Triozidae). ZC reduces yield and quality, due to discoloration of the tuber tissue. Symptom severity is affected by the time of infection and early-season infections express relatively higher degrees of ZC. Although tubers infected late in the growing season, i.e. within 2 weeks of harvest, express minimal to no symptoms, they may proceed to express ZC symptoms following storage. Currently, visualization of ZC symptoms in tubers is used by processors to estimate the percentage of ZC-affected tubers in truckloads of potatoes. This approach, however, is time consuming and relies on evaluations of a small sample size. Thus, it is likely to fail in detecting the asymptomatic late infections. Using several potato genotypes infected at different times during the growing season, this study was set to determine if visible and near infrared spectrometry, and infrared thermal imaging, can be used to distinguish ZC-affected tubers, and to predict the severity of ZC symptoms. The subjective symptom score categorization, commonly used in ZC studies, corresponded with the percentage of the symptomatic area in the tubers sliced at the solon attachment end. The percentage of symptomatic area was also correlated with Lso titer. Reflectance effectively distinguished infected and uninfected tubers with high accuracy; the combined wavelengths 468, 582, 680 and 720-nm were the most effective in predicting symptom severity. Near infrared (NIR) and infrared (IR) thermal imaging failed to distinguish tubers based on Lso infection status after storage. The quantitative measure of ZC severity, and the effectiveness of some visual wavelengths in detecting ZC may help to facilitate selection assays for ZC resistance. While in our study infrared imaging did not appear to be effective in distinguishing Lso- affected tubers after storage, additional studies with field harvested tubers are still needed to evaluate the effectiveness of VIS, NIR and IR spectrometry in screening for ZC.     

Assessment of Tolerance to Zebra Chip in Potato Breeding Lines under Different Insecticide Regimes in New Zealand

Fourteen potato lines, including some indicating reduced susceptibility to zebra chip (ZC), were assessed in trials over three seasons at Pukekohe (New Zealand) under three insecticide regimes: FULL (pre-plant plus 14–15 foliar applications through the season), REDUCED (4–5 foliar applications) and NIL (no insecticide). In all three seasons there were consistent reductions in tuber yield, dry matter and tuber size from the FULL to the REDUCED to the NIL insecticide treatment. ZC severity recorded in crisp slices before and after frying tended to be highest in the NIL treatment and lowest in the FULL treatment. All lines had symptoms of ZC in both raw and fried crisp samples but there were clear differences between lines, with some showing significantly fewer symptoms of ZC than current widely grown potato lines in New Zealand. The potential of these ZC-symptom tolerant lines, both as parents in a breeding programme and for possible release, is discussed. CLso titre of individual tubers of three lines was also determined from the 2014 NIL plots using qPCR. There was little relationship between CLso titres and ZC scores in either raw or fried crisp slices both within and between lines.     

Analysis of Variation in Anthocyanin Composition in Korean Coloured Potato Cultivars by LC-DAD-ESI-MS and PLS-DA

Anthocyanin concentration and composition and the effect of steaming and baking on these were evaluated in tubers of Korean red- and purple-fleshed potato cultivars and breeding clones using liquid chromatography with diode array detection and electrospray ionization-mass spectrometry (LC-DAD-ESI-MS). Twenty-six anthocyanins were isolated, of which 24 were identified. Remarkably, five cis isomers were identified, of which four, viz., cis-petanin, cis-peonanin, petunidin 3-cis-caffeoylrutinoside-5-glucoside, and petunidin 3-cis-feruloylrutinoside-5-glucoside, are reported for the first time. Moreover, pelargonidin 3-p-coumaroylrutinoside-5-glucoside (pelanin), peonidin 3-p-coumaroylrutinoside-5-glucoside (peonanin) and petunidin 3-p-coumaroylrutinoside-5-glucoside (petanin) were identified as the principal anthocyanins. We found that the total anthocyanin content of coloured potatoes was decreased by steaming and baking compared with the raw state. In addition, we performed partial least square discriminant analysis (PLS-DA) to discriminate between the analyzed anthocyanins. Cis isomers seemed to play a vital role as a biomarker in the PLS-DA model based on the type of processing and colour of the tubers.     

Genetic Diversity of Pathogenic <Emphasis Type="Italic">Fusarium semitectum</Emphasis> Isolates from Potato Tubers,Using PCR-IGS-RFLP Markers

Fusarium semitectum is one of the important causal agents of dry rot of potato tubers in the world. In order to determine genetic variability among 41 isolates of F. semitectum, morphological and molecular studies were carried out. All F. semitectum isolates were recovered from infected potato tubers with dry rot symptoms collected from four provinces in Iran. According to macroscopic and microscopic characteristics, 41 isolates of F. semitectum were classified in two morphotypes (morphotypes I and II). All 41 isolates were evaluated for their pathogenicity on healthy potato tubers. Tuber rot symptoms were observed on the 21st day after inoculation of Fusarium isolates on the tubers tested. The measurement was done by comparing the depth and width of lesion expansion among the isolates. Molecular characterization through PCR-IGS-RFLP analysis by six restriction enzymes (AluI, BsuRI, Eco88I, MspI, TaqI and PstI) divided the 41 isolates of F. semitectum into two separated clusters that were in accordance with the morphological characterization.     

Effects of Holding Temperatures on the Development of Zebra Chip Symptoms, ‘<Emphasis Type="Italic">Candidatus</Emphasis> Liberibacter Solanacearum’ Titers,and Phenolic Levels in ‘Red La Soda’ and ‘Russet Norkotah’ Tubers

‘Candidatus Liberibacter solanacearum’ (Lso) is the putative causal agent of zebra chip disease (ZC). Late season Lso-infected potatoes that are known to be asymptomatic at harvest may continue to develop symptoms by the time of shipment to consumers. This study observed symptom development, Lso titer changes, and changes in symptom-associated phenolic compounds in Lso-infected yet asymptomatic tubers placed at different holding temperatures. ZC symptoms present in freshly-sliced tubers were more severe in ‘Red La Soda’ or ‘Russet Norkotah’ tubers held at 3 °C than at 6 °C or 9 °C. However, Lso titers showed considerable variability in both cultivars over time and at these holding temperatures. Phenolic compound levels, known to be associated with ZC symptom severity, in tubers kept at 3 °C were greater than those kept at 6 °C or 9 °C and increased over time. These results demonstrate that ZC could develop in tubers kept in cold storage, with those kept at 3 °C having more ZC development than those kept at 6 °C or 9 °C.     

Selection of Yield-Associated Morphological and Biochemical Traits Using Correlation and Path Coefficient Analysis in Potato (<Emphasis Type="Italic">Solanum tuberosum</Emphasis> L.) in the Foothills of North-Western Himalayas

The objective of the study was to assess the direct and indirect effects of 13 important morphological and biochemical traits on yield enhancement in 28 advanced breeding lines of potato (Solanum tuberosum L.) in the foothills of north-western Himalayas. Tuber yield was positively correlated with number of tubers per plant (r?=?0.76), number of stems per plant (r?=?0.53), number of leaves per plant (r?=?0.43) and tuber weight (r?=?0.37). Furthermore, tuber yield exhibited a significant negative correlation with days to maturity (r?=???0.39). Days to 50% emergence had a significant negative correlation with protein content (r?=???0.42). Path analysis revealed that the components of yield, number of tubers per plant and tuber weight, had high positive direct effects (0.876 and 0.618, respectively) on tuber yield, whereas the effects of other traits were low (≤?0.128). Furthermore, tuber weight had an indirect negative effect on tuber yield through the number of tubers. Tuber size had a low correlation (0.19) with tuber yield because a positive indirect effect (0.451) through tuber weight was balanced by a negative indirect effect (??0.254) through tuber number. The number of stems and number of leaves had positive indirect effects (0.377 and 0.377, respectively) on tuber yield through tuber numbers, whereas days to maturity had a negative indirect effect (??0.298) through tuber numbers. There were virtually no indirect effects through the biochemical traits. The implications for potato breeding are discussed.     

TerraRossa: A Mid-Season Specialty Potato with Red Flesh and Skin and Resistance to Common Scab and Golden Cyst Nematode

TerraRossa (POR01PG20–12) is a mid-season specialty potato, released by Oregon State University, and is a product of the Northwest Potato Variety (Tri-State) Development Program. This cultivar is unique among commercially available potato cultivars in that plants produce small- to medium-sized smooth, oblong- to long-shaped tubers with red skin and red flesh. Total tuber yields of TerraRossa are similar to Dark Red Norland and less than Red La Soda. Average tuber size (136 g) is less than both of the comparison cultivars, reflecting inherent differences in tuber size distribution. TerraRossa tubers have total antioxidant levels higher than traditional white fresh varieties and comparable to the All Blue purple potato, known for its high antioxidant levels. Sensory evaluations of TerraRossa tubers indicated that it has good culinary attributes following boiling, baking, and microwaving. Potato chips made from TerraRossa tubers retained their unique red color, which represents a novelty in the chipping industry. TerraRossa could be a good candidate for the organic sector due to its tolerance to common scab (Streptomyces scabies) and tuber late blight (Phytophthora infestans) and its resistance to golden cyst nematode (Globodera rostochiensis). Due to its high yields, high chipping quality, good culinary properties, high antioxidant content and disease resistance, TerraRossa is a good candidate for opening new specialty type markets, adding diversity to the marketplace.     

Canopy photosynthesis,stomatal conductance and yield ofSolanum tuberosum grown in a warm climate

Selected potato (Solanum tuberosum L.) genotypes were grown in the field from May to September during 1984 and 1985, to study their growth and gas exchange responses in a warm climate. The parameters measured were leaf area index (LAI), canopy photosynthesis on ground area basis (CPn-Ga), stomatal conductance, dry matter partitioning and yield. The LAI ranged from 1.40 for Dakchip to 6.60 for Pungo during August 1984. The LAI also differed significantly among the potato genotypes for the three samplings during 1985. Atlantic, Chipbelle and DTO-33 showed no decline in their LAI up to 73 days after planting (DAP), indicating a better heat-stress tolerance response than the other genotypes. During both years, CPn-Ga differed significantly among the genotypes and Pungo had higher CPn-Ga than all the other genotypes. Mean CPn-Ga rates were 1.72 and 4.34 g CO₂ m^?2hr^?1 during 1984 and 1985, respectively. Mean adaxial and abaxial stomatal conductances were 0.86 and 1.46 cm sec^?1, during 1984, and stomatal conductances were similar for both years. Stomatal conductance did not appear to limit gas exchange in potato leaves. Dry matter partitioning to tubers ranged from 8.9% for Pungo to 55.5% for Atlantic 67 DAP during 1984. At final harvest, July 19, 1985, dry matter partitioning to tubers varied from 47.5% for Pungo to 69.9% for Chipbelle. The tuber yield ranged from 9.6 to 27.8 MT/ha. This study indicated that Atlantic and La Chipper have potential for growing in a warm climate.     

Chloropicrin Soil Fumigation Reduces <Emphasis Type="Italic">Spongospora subterranea</Emphasis> Soil Inoculum Levels but Does Not Control Powdery Scab Disease on Roots and Tubers of Potato

The effect of chloropicrin fumigation on the soil populations of Spongospora subterranea and the development of powdery scab, formation of root galls and tuber yield was investigated in seven field trials conducted in Minnesota and North Dakota. Sixteen potato cultivars, with different levels of susceptibility to disease on roots and tubers, were planted in plots treated with chloropicrin at rates ranging from zero to 201.8 kg a.i. ha^?1. The amount of S. subterranea DNA in soil was determined using qPCR. Bioassays were conducted to further assess the effect of chloropicrin fumigation on root colonization by S. subterranea in two potato cultivars with contrasting disease susceptibility. In the field, chloropicrin applied at rates between 70.1 to 201.8 kg a.i. ha^?1 significantly decreased S. subterranea initial inoculum in soil but increased the amount of disease observed on roots and tubers of susceptible cultivars. The effect of increasing disease was confirmed in controlled conditions experiments. Although the amount of S. subterranea DNA in roots of bioassay plants increased with increasing chloropicrin rates, it remained similar among potato cultivars. Chloropicrin fumigation significantly increased tuber yield which in cultivars such as Shepody and Umatilla Russet were associated with the amount root galls (r = 0.30; P < 0.03). Results of these studies contradict earlier reports on the use of chloropicrin fumigation for the control of powdery scab. Factors other than inoculum level, such as environmental conditions that affect inoculum efficiency and host susceptibility, may be significant contributors to the development of powdery scab and root gall formation.     

Effect of cold storage on proteinase and chorismate mutase activities inSolanum tuberosum L. Genotypes differing in blackspot susceptibility

Potato tubers (Solanum tuberosum) from genotypes differing in chemical susceptibility to the physiological disorder blackspot bruise (TXA 763-5, Atlantic, Ranger Russet, Russet Burbank, and Lemhi Russet) were stored for eight months at 3 C. Protein extracts from each cultivar were assayed for proteinase and chorismate mutase (CM) activities. During cold storage, three of five genotypes tested increased in their ability to develop melanintype pigments responsible for blackspot. Concurrent with this were increases in either endopeptidase, aminopeptidase, or CM activities or combinations of enzyme activities specific to genotypes. These increases in enzyme activity may be responsible for the increase in levels of the melanin precursor tyrosine, associated with cold storage of potato tubers.     

Role of ‘<Emphasis Type="Italic">Candidatus</Emphasis> Liberibacter solanacearum’ and <Emphasis Type="Italic">Bactericera cockerelli</Emphasis> Haplotypes in Zebra Chip Incidence and Symptom Severity

Two haplotypes of the pathogen, ‘Candidatus Liberibacter solanacearum,’ (Lso) and four haplotypes of the insect vector, Bactericera cockerelli, are associated with zebra chip disease of potato. Whether disease severity or incidence is influenced by pathogen or insect haplotype is poorly understood. The role of Lso ‘A’ and ‘B,’ transmitted by three haplotypes of B. cockerelli, on disease severity and incidence in eight potato cultivars was analyzed. Both haplotypes of Lso induced tuber symptoms. In general, Lso B caused higher incidence of symptoms, and greater reduction in tubers compared with Lso A. Lso B was associated with more severe tuber symptoms, producing fewer mild or moderate tuber symptoms. Lso A was associated with less severe tuber symptoms, despite being able to induce severe symptoms. Disease incidence, tuber yield, and symptom severity ratings were not dependent upon the psyllid haplotype transmitting the pathogen, suggesting that pathogen, not insect haplotype affects Lso transmission.     

Potato Common Scab: a Review of the Causal Pathogens,Management Practices,Varietal Resistance Screening Methods,and Host Resistance

Potato common scab is a widespread disease in which scab-like lesions develop on tubers. The disease is caused by pathogenic Streptomyces species, which synthesize the phytotoxin thaxtomin. The txtAB operon, responsible for thaxtomin production, can be used as a marker to identify pathogenic strains of the bacterium. Screening methods to assess scab susceptibility in breeding programs are time-consuming and can produce variable results. Management practices to control the disease vary and include crop rotation, tolerant varieties, monitoring soil pH, avoiding low soil moisture at tuber initiation, and application of soil- and/or seed-applied pesticides. There is a wide range in levels of tolerance among potato varieties. Many public research programs are committed to breeding for scab-tolerant varieties and evaluating management methods. Topics reviewed target readers focused on breeding and disease management objectives to reduce the incidence and severity of potato common scab.     

The Suppression of Verticillium Wilt of Potato Using Corn as a Green Manure Crop

Field studies involving the effects of growing sweet corn (Zea mays var. Jubilee sweet corn and var. Jubilee super-sweet corn) as a green manure for 2 or 3 seasons demonstrated both suppression of verticillium wilt by 60–70% (Verticillium dahliae Kleb.) and increased potato yields. Although these treatments showed no direct effect on V. dahliae soil populations, the colonization of V. dahliae on potato feeder-roots and in potato tissue of stem apices were reduced. Feeder-root colonization by V. dahliae was positively correlated with verticillium wilt incidence (P?≤?0.05 to P?≤?0.01) and negatively correlated with yield (P?≤?0.05). Corn green manures additionally increased populations of several soilborne fungi which included Ulocladium, and Fusarium equiseti. Specific nutritional and microbial effects were secondary to the effects of cropping practices. When compared with the fallow treatments for 1994, 1995, and 1997, the percentage yield increases for 1994 were: +34% for total yield, +57% for U.S. #1’s, and +127% for tubers >280 g; for 1995 (a year of reduced degree-days and decreased verticillium incidence): +14% for total yields, +15% for U.S. #1 yields, and +21% for tubers >280 g; for 1997: +24% for yield totals, +74% for U.S. #1’s and +179% for tubers >280 g. For establishing these yield benefits, stalks with and without ears of corn were used as green manures. Corn varieties differed for effectiveness as a green manure, which could be accounted for by differences of biomass. When compared with the super-sweet corn, the sweet corn produced an increase (>2-fold) of biomass with less than half of the resulting wilt incidence. When potato was grown consecutively for 2 years, the benefits from green manures became mostly eliminated. However, following 2 consecutive years of potato, a single green manure of sweet corn was sufficient to return the potato crop to the original benefits of verticillium suppression and increased yields. This occurred even though soilborne V. dahliae inoculum levels had increased by >4-fold from 45 to 182 cfu g^?1 of soil. Results of this study demonstrate the importance of green manures and soil-ecology to the management of the Russet Burbank potato.     

Seed Potato Performance after Storage in Light at Elevated Temperatures

In regions with short growth seasons, it is of great importance to use potato (Solanum tuberosum L.) seed tubers with a high growth vigour and a short growth cycle. Such qualities may be obtained by treatments advancing the physiological age of the seed tubers. In this study, we have exposed tubers from four cultivars to various combinations of temperature and light conditions (green-sprouting) for 3–7 months in controlled climate. Subsequent sprout quality, seed tuber health and performance were studied in laboratory, greenhouse and field trials. Satisfactory short, sturdy and leafy sprouts were produced even after 7 months storage at 15 °C under light exposure. An assay of black scurf (Rhizoctonia solani) on the tuber skin showed that light exposure significantly reduced the occurrence compared with dark-stored tubers, while the average effect of storage temperatures was insignificant. In general, green-sprouting advanced emergence and plant growth by 1–2 weeks, and showed early tuber initiation and growth, compared to untreated material. Yields, 107 days after planting in the field trial, did not deviate significantly from untreated tubers. However, plant development at harvest was in accordance with general responses to physiological ageing of potato seed tubers, i.e. still tall and immature plants from untreated tubers, and short and mature plants from aged tubers. Results demonstrated the possibility of successful long-term storage of potato seed tubers in light at elevated temperatures and a potential for earlier harvests and higher early yields from such treatments.     

Phenotypic and Genomic Modifications Associated with <Emphasis Type="Italic">Globodera pallida</Emphasis> Adaptation to Potato Resistances

Studying phenotypic and genomic modifications associated with pathogen adaptation to resistance is a crucial step to better understand and anticipate resistance breakdown. This short review summarizes recent results obtained using experimentally evolved populations of the potato cyst nematode Globodera pallida. In a first step, the variability of resistance durability was explored in four different potato genotypes carrying the resistance quantitative trait loci (QTL) GpaV_vrn originating from Solanum vernei but differing by their genetic background. The consequences of the adaptation to resistance in terms of local adaptation, cross-virulence and virulence cost were then investigated. Finally, a genome scan approach was performed in order to identify the genomic regions involved in this adaptation. Results showed that nematode populations were able to adapt to the QTL GpaV_vrn, and that the plant genetic background has a strong impact on resistance durability. A trade-off between the adaptations to different resistant potato genotypes was detected, and we also showed that adaptation to the resistance QTL GpaV_vrn from S. vernei did not allow adaptation to the colinear locus from S. sparsipilum (GpaV_spl). Unexpectedly, the adaptation to resistance led to an increase of virulent individual’s fitness on a susceptible host. Moreover, the genome scan approach allowed the highlighting of candidate genomic regions involved in adaptation to host plant resistance. This review shows that experimental evolution is an interesting tool to anticipate the adaptation of pathogen populations and could be very useful for identifying durable strategies for resistance deployment.     

Effects of Different Soil Treatments on the Development of <Emphasis Type="Italic">Spongospora subterranea</Emphasis> f. sp. <Emphasis Type="Italic">subterranea</Emphasis> in Potato Roots and Tubers in the Greenhouse

Powdery scab caused by Spongospora subterranea f. sp. subterranea (Sss) causes extensive losses in potato production systems globally. Two pot experiments were established in the greenhouse in summer 2013 and winter 2014 to evaluate the effectiveness of different soil chemicals, fumigant, amendments and biological control agents (BCAs) against Sss in the rhizospheric soil, potato roots and tubers. The study used visual assessment methods to assess the effect of treatments on root galling and zoosporangia production, and qPCR to measure Sss concentration in the soil and in the potato roots and tubers. All six soil treatments, namely metam sodium, fluazinam, ZincMax, calcium cyanamide, Biocult and a combination of Bacillus subtilis and Trichoderma asperellum recorded significantly (P < 0.05) lower numbers of zoosporangia in the roots compared to the untreated control. The same effect was observed on the concentration of Sss DNA in the roots at tuber initiation. A more diverse picture was obtained when root gall scores at tuber initiation and Sss DNA in the rhizospheric soil at tuber initiation and harvesting were compared. Significant differences (P < 0.05) were also noted in disease severity, disease incidence, and tuber yield between metam sodium, fluazinam, ZincMax, calcium cyanamide and the untreated control. Calcium cyanamide gave the highest tuber yield. The study demonstrated the potential of soil treatments such as metam sodium, fluazinam, ZincMax and calcium cyanamide in managing Sss in potatoes by reducing the pathogen both in the rhizospheric soil and the roots of the potato plant.     

Free-Living Plant-Parasitic Nematodes do not Affect the Efficiency of Seed Tuber Fungicide Treatment against <Emphasis Type="Italic">Rhizoctonia solani</Emphasis>

Stem canker on germinating potato sprouts is often caused by seed-borne inoculum of the fungus Rhizoctonia solani. However, high amounts of free-living plant-parasitic nematodes have been found in field patches of potato plants with stem canker. Fungicide treatment of the seed tubers can be used to avoid stem canker caused by seed-borne inoculum but it is unknown if nematodes can affect this. To investigate whether free-living plant-parasitic nematodes, the root-lesion nematode Pratylenchus penetrans or a combination of several plant-parasitic nematode genera in a full nematode community, may have a negative effect on the fungicide seed treatment, a pot experiment with seed tubers inoculated with R. solani, half of which were treated with fungicides, was performed. The seed-borne inoculum caused severe damage to the plants, while no fungal damages were observed on the fungicide treated plants. This shows that the nematodes did not affect the fungicide treatment. The probability of black scurf decreased in treatments with a full nematode community, which may be due to the action of fungal-feeding nematodes.     

Controlling parasitic nematodes and soil-borne diseases of potatoes with soil fumigation

The fumigation of soil infested with a moderate population of parasitic nematodes and fungi very effectively improved the growth, quality and yield of potatoes. The beneficial effects of fumigation with DD and Vorlex were mainly attributed to control of nematodes, particularly the meadow nematode. However, the fumigants did effectively reduce the population ofRhizoctonia solani on potato roots and “scurf” on tubers caused byR. solani. Also less vascular browning of tubers developed in fumigated soil. Thus the effects of soil fumigation were complex, affecting many microorganisms and consequently producing numerous manifestations in the growth of potatoes.