Analysis of methanogenic archaeal communities of rumen fluid and rumen particles from Korean black goats |
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Authors: | Min‐Jung GU Md Jahangir ALAM Seon‐Ho KIM Che‐Ok JEON Moon‐Baek CHANG Young‐Kyoon OH Sang‐Cheol LEE Sang‐Suk LEE |
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Institution: | 1. Department of Animal Science and Technology, College of Bio industry Science, Sunchon National University, Suncheon;2. Department of Life Science, College of Natural Science, Chung‐Ang University, Seoul;3. Department of Animal Science and Technology, College of Industrial Science, Chung‐Ang University, Ansung;4. Animal Nutrition and Physiology Team, National institute of Animal Science, RDA, Suwon, Republic of Korea |
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Abstract: | Molecular diversity of methanogens in the rumen of Korean black goats was investigated with 16S rRNA gene clone libraries using methanogen‐specific primers. The libraries were composed of rumen fluid‐associated methanogens (FAM) and rumen particle‐associated methanogens (PAM) from rumen‐fistulated Korean black goats. Among the 141 clones of the FAM library, the sequences were mostly related to two phyla, the Methanobacteriaceae family (77.3%) and the Thermoplasmatales family (22.7%); and among the 68 clones of the PAM library, sequences were also mainly clustered in the two phyla, the Thermoplasmatales family (63.24%) and the Methanobacteriaceae family (35.29%). Most of the sequenced clones in the two libraries were closely related to uncultured methanogenic archaeon. Quantitative real‐time PCR revealed that PAM (8.97 log 10) had significantly higher (P < 0.01) density of methanogens by the methanogenic 16S rRNA gene copies than FAM (7.57 log 10). The two clone libraries also showed difference in Shannon index (FAM library 1.70 and PAM library 1.59) and Chao 1 estimator (FAM library 18 and PAM library 17 operational taxonomic units). Apparent differences found in the microbial community from the two 16S rRNA gene libraries could be a result of such factors as the chemical and physical nature of the target material surface, types or component of diets, the interaction between the methanogens and other microbes, and age of the experimental goats. |
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Keywords: | Korean black goat Methanobacteriaceae methanogens rumen Thermoplasmatales |
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