小麦条锈菌3个看家基因SNP引物的首次报道

First Report of SNP Primers of Three House-keeping Genes of Puccinia striiformis f. sp. tritici

In order to analyze the population structure of Puccinia striiformis f. sp. tritici (Pst), SNPs primers of Pst were developed from DNA sequences of nine house-keeping genes Chs, Act, Mapk1, Tub, Cdc2, Rd, Sm, Ls and Ef-1α obtained from GenBank. Eight of which were from Pst and one from P. graminis f. sp. tritici (Pgt). Thirteen pairs of primers were designed and screened based on at least 30 isolates of Pst obtained from diverse locations. Three of them were polymorphic namely Map1351S/Map1683A, Cd28S/Cd352A and Ef137S/Ef531A. Polymorphic loci analysis based on 149 Pst isolates from 5 provinces indicated that the three primers had good polymorphism. Cd28S/Cd352A had 8 polymorphic loci, three of them were phylogenetically informative. Ef137S/Ef531A had 6 polymorphic loci and 4 of them were informative. Map1351S/Map1683A had 8 polymorphic loci and 4 were informative. The 3 primers were used for analyzing Pst population and revealed the ancestral origin, phylogeny relation of haplotypes, genetic differentiation of the population, gene flow, and the evolution and migration relation between Pst populations thereby. The findings indicate that the 3 genes SNP primers can be used for Pst population genetic structure analysis.