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梨自交不亲和基因cDNA芯片制备及对部分砂梨品种S基因型的鉴定
引用本文:江 南,,谭晓风,张 琳,张靖国,胡红菊.梨自交不亲和基因cDNA芯片制备及对部分砂梨品种S基因型的鉴定[J].园艺学报,2015,42(12):2341-2352.
作者姓名:江 南    谭晓风  张 琳  张靖国  胡红菊
作者单位:湖南工业大学包装与材料工程学院,湖南株洲 412007;中南林业科技大学经济林培育与保护教育部重点实验室,经济林育种与栽培国家林业局重点实验室,长沙 410004;湖北省农业科学院果树茶叶研究所,武汉 430064
基金项目:国家自然科学基金项目(31272124)
摘    要:利用东方梨中已鉴定的52个S等位基因HV区cDNA序列作为靶基因序列设计探针,制备梨S基因cDNA检测芯片,每张芯片上含有240个位点55个cDNA探针,包含所有序列完善的S基因HV区特异的cDNA序列。以被检测品种雌蕊cDNA为模板,采用Cy3荧光修饰引物经S基因特异PCR扩增标记被检测品种的cDNA序列,并与芯片杂交以检测不同品种的S基因型。结果表明:利用cDNA检测芯片与‘丽江黄酸梨’、‘秀玉’、‘弥渡玉梨’、‘白面梨’和‘德胜香’等已知S基因型品种杂交,杂交结果显示与S基因寡核苷酸芯片检测信号一致,与各品种已知S基因型相符合。利用cDNA芯片和进一步完善的S基因寡核苷酸芯片并行检测鉴定了‘文山红梨’等24个未知S基因型的砂梨品种,获得各品种的S基因型。梨S基因cDNA芯片的构建进一步完善了梨S基因检测平台。

关 键 词:  style='color:  black  font-size:  9pt'>梨  自交不亲和    style='color:  black  font-size:  9pt'>S    style='color:  black  font-size:  9pt'>基因型    style='color:  black  font-size:  9pt'>cDNA  style='color:  black  font-size:  9pt'>芯片    style='font-size:  9pt'>S  661.2寡核苷酸芯片  

Preparation of S-RNase cDNA Microarray and Its Application in Identifying Pear Cultivars S-genotypes
JIANG Nan,,TAN Xiao-feng,ZHANG Lin,ZHANG Jing-guo,HU Hong-ju.Preparation of S-RNase cDNA Microarray and Its Application in Identifying Pear Cultivars S-genotypes[J].Acta Horticulturae Sinica,2015,42(12):2341-2352.
Authors:JIANG Nan      TAN Xiao-feng  ZHANG Lin  ZHANG Jing-guo  HU Hong-ju
Institution:1.School of Packing and Material Engineering,Hunan University of Technology,Zhuzhou,Hunan 412007,China;2Key Laboratory of Cultivation and Protection for Non-wood Forest of Ministry of Education,the Key Laboratory of Non-wood Forest Product of Forestry Ministry,Central-south University of Forestry and Technology,Changsha 410004,China; 3Institute of Fruit and Tea,Hubei Academy of Agricultural Sciences,Wuhan 430064,China
Abstract:Using the cDNA sequences from Hyper variable(HV)regions of 52 S-alleles in Oriental pear cultivars,cDNA microarray for S-RNase detections was established. Totally 240 dots and 55 cDNA probes,which includes all the HV specific cDNA sequences of perfected S-RNase gene,were spotted on the chip. By Cy3-labeled primers and cDNA template of tested cultivars pistils,the Cy3-labeled specific cDNA PCR products of S-RNase were amplified and hybridized with the cDNA microarray in order to detect the S genotype of pear cultivars. Cultivars with known S-genotype such as Lijiang Huangsuanli,Xiuyu,Midu Yuli,Baimianli and Deshengxiang were S-genotyped using the cDNA microarray and the results showed that the microarray analyses were consistent with their oligonucleotide genechip analyses and their RFLP and DNA sequenced results. Then the S-RNase cDNA microarrays and the oligonucleotide genechips were used to parallel S-genotyping 24 sand pear cultivars with unknown S-genotype and their S-genotypes were determined. In conclusion,the construction of cDNA microarrays has further improved the pear S-RNase detection platform.
Keywords:pear  self-incompatibility  S-genotype  cDNA microarray  oligonucleotide genechip
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