宏基因组学方法分析奶牛瘤胃尿素分解菌的多样性

利用脲酶保守序列ureC引物和细菌16S rDNA通用引物PCR扩增并测序,揭示奶牛瘤胃尿素分解菌的多样性。提取本研究室前期鉴定的16个脲酶克隆的质粒,利用脲酶保守序列ureC引物和细菌16S rDNA通用引物进行PCR扩增,将PCR产物连接到pMD19-T载体,转化E.coliJM109,挑取阳性克隆测序。利用Blast程序将序列与GenBank和RDP数据库进行比对,并使用Mega 4.0软件构建系统发育树。4个脲酶克隆含有脲酶保守序列ureC,系统发育树分析表明,U1、U5、U13和U15分别属于Firmicutes、ε-Proteobacteria、β-Proteobacteria和Actinobacteria;7个脲酶克隆含有16S rDNA,经过建树分析,U1、U3、U7、U10、U11、U12和U14分别属于Staphylococcus、Shigella、Bacillus、Acinetobacter、Achromobacter、未培养微生物和Bacillales。实验结果显示,奶牛瘤胃微生物脲酶基因和尿素分解菌具有多样性的特点。

Analysis for the diversity of ureolytic bacterium from dairy rumen based on metagenomics

The purpose of this study was to reveal the phylogenetic diversity of ureolytic bacterium from dairy rumen microbial by PCR using urease conserved ureC degenerate primer and bacterial 16S rDNA universal primer and sequencing.All of the previously identified plasmids for the sixteen urease positive clones which were identified previously were exacted.Polymerase chain reaction degenerate primers based on the ureC gene which was conserved in ureolytic bacterium were designed and used to amplify the ureC genes ...