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用于SSR分析的大豆干种子DNA提取条件的优化
引用本文:姚丹,张扬,曲静,张迪,王丕武.用于SSR分析的大豆干种子DNA提取条件的优化[J].安徽农业科学,2009,37(23):10917-10921.
作者姓名:姚丹  张扬  曲静  张迪  王丕武
作者单位:吉林农业大学,吉林长春,130118;吉林农业大学,吉林长春,130118;吉林农业大学,吉林长春,130118;吉林农业大学,吉林长春,130118;吉林农业大学,吉林长春,130118
基金项目:吉林省科技厅重大项目 
摘    要:目的]探讨适于SSR分析的大豆干种子DNA提取的最佳方法。方法]以2个大豆品种的干种子为材料,分别采用改良SDS法和CTAB法提取大豆基因组DNA,用1%琼脂糖凝胶电泳检测DNA质量,用紫外分光光度计分别测定其DNA在A230、A260和A280下的吸光值,根据A260/A230和A260/A280的比值检测DNA的纯度和浓度,并分别以两种DNA为模版进行SSR—PCR扩增。结果]相同DNA提取条件下,SDS法提取DNA样品的纯度和浓度均高于CTAB法,SDS终浓度为2%(W/V),水浴15min,氯仿/异戊醇抽提2次时所提取大豆种子DNA的纯度及浓度最高,其DNA的0D260/0D280值为1.86,SDS法所提的DNA泳带分布较集中,无拖尾现象,其DNA浓度能够满足SSR扩增模板的需求。结论]SDS浓度为2%(W/V),水浴15min,氯仿/异戊醇抽提2次时提取大豆干种子DNA的浓度和纯度都较高,可以满足后续的各种分子生物学操作的要求。

关 键 词:大豆  干种子  基因组DNA  提取

Optimization of the Conditions for Extracting DNA for SSR Analysis from Dry Soybean Seeds
YAO Dan et al.Optimization of the Conditions for Extracting DNA for SSR Analysis from Dry Soybean Seeds[J].Journal of Anhui Agricultural Sciences,2009,37(23):10917-10921.
Authors:YAO Dan
Institution:YAO Dan et al(Jilin Agricultural University,Changchun,Jilin 130118)
Abstract:Objective] The purpose was to discuss the best way to extract DNA from dry seeds of soybean for SSR analysis.Method] With dry seeds of soybean as tested materials,genomic DNA of soybean was extracted with modified SDS method and CTAB method and examined with 1% agarose gel electrophoresis.The absorbance value was measured by ultraviolet spectrophotometer at A230、A260 and A280 and the ratio of A260/A230 and A260/A280 was used to determine the DNA purity and the mass concentration.DNA extracted with 2 methods was used as the template for SSR-PCR amplification.Result] The DNA purity and concentration of samples extracted with SDS method were higher than the CTAB method under the same conditions.The SDS concn.of 2%(W/V),water bath for 15 min and extracted 2 times with chloroform/isoamyl alcohol,the DNA purity and concentration extracted from soybean seed were the highest and the ratio of OD260/OD280 was 1.86.DNA bands extracted with SDS method were centralized distribution and non-tailing phenomenon which could meet the requirements of SSR amplification template.Conclusion] The SDS concn.of 2%(W/V),water bath for 15 min,extracted 2 times with chloroform/isoamyl alcohol,the ratio of OD260/OD280 was 1.86,which could meet the requirements of molecular biology research.
Keywords:Soybean  Dry seeds  Genomic DNA  Extraction  
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