Application of Polymorphic Microsatellite Loci in a Channel Catfish Ictalurus punctatus Breeding Program

Abstract.— In order to monitor spawning success in earthen ponds, individual channel catfish Ictalurus punctatus broodfish were identified prior to stocking by genotype analysis with polymorphic microsatellite DNA markers. Individual spawns were collected and reared in a hatchery, and eight sac-fry per spawn were sampled for genotype analysis. Mendelian inheritance of microsatellite alleles was used to identify parents of each spawn. The probability of detecting a falsely matched offspring and spawning pair was >99%. Average spawning success was 44% (17–80%). Multiple spawning by males was found in seven of the eight ponds sampled. In these ponds, 47% of the males fertilized 2–6 egg masses over 1–8 wk, although most were 2–3 wk apart. Four different spawns were identified as two full-sib families and were probably due to interrupted spawning. Parent/offspring genotype analysis will be useful for production of half-sib families for estimation of genetic components of variation, estimation of effective breeding population, and selection of broodstock for multiple reproductive traits under natural spawning conditions.