首页 | 本学科首页   官方微博 | 高级检索  
     检索      

新吉细毛羊皮肤组织均一化全长cDNA文库的质量评价
引用本文:詹振宏,黄锡霞,田可川,吴伟伟,哈尼克孜·吐拉甫,田月珍,马依拉·吐尔逊,艾买提·买买提,何丽,石晓雷,刘春洁.新吉细毛羊皮肤组织均一化全长cDNA文库的质量评价[J].新疆农业大学学报,2013(4):269-274.
作者姓名:詹振宏  黄锡霞  田可川  吴伟伟  哈尼克孜·吐拉甫  田月珍  马依拉·吐尔逊  艾买提·买买提  何丽  石晓雷  刘春洁
作者单位:[1]新疆农业大学动物科学学院,乌鲁木齐830052 [2]新疆畜牧科学院畜牧研究所,乌鲁木齐830000
基金项目:现代农业产业技术体系建设专项资金(CARS-40);新疆维吾尔自治区重大专项(200731132-7;201230116-6);新疆农业大学紧缺人才专业大学生创新项目(jqrcp32010021)
摘    要:通过对已构建新吉细毛羊皮肤组织的均一化全长cDNA文库进行活化,在此基础上进行EST生物信息学分析研究,期望能发现影响细毛羊羊毛性状的主效基因或相关基因。运用菌落PCR、菌液PCR、质粒快速鉴定3种方法对cDNA文库进行评价,通过测序,在NCBI上BLASTn搜索、比对及运用DNAstar等软件进行分析。初步鉴定的结果:cDNA文库的库容量(滴度)为1.57×10。pfu/mL,菌落PCR、菌液PCR阳性克隆的小片段率在80%~90%,克隆的片段大小在0.6~2.0kb,cDNA在300~500bp,而质粒快速鉴定的在90%,克隆的片段载体带大小3.5~5.0kb。质粒快速鉴定的效果好于其他两种方法,耗时相对短,同时小片段率高;cDNA文库保存完好,符合基因文库的质量要求,有足够大的库容量来保证筛选目的基因。通过对筛选的阳性克隆5’端随机测序,随后获得可读序列169条,经过相关生物信息查询之后,发现其中可能含有完整基因。

关 键 词:新吉细毛羊  cDNA文库  质量评价  ESTs序列分析

Quality Evaluation of Normalized Full-length cDNA Library of Xinji Fine-wool Sheep Skin Tissue
ZHAN Zhen-hong,HUANG Xi-xia,TIAN Ke-chuan,WU Wei-wei,Hanekezi Tulafu,TIAN Yue-zhen,Mayila Tuersun,Aimaitijiang Maimaiti,HE Li,SHI Xiao-lei,LIU Chun-jie.Quality Evaluation of Normalized Full-length cDNA Library of Xinji Fine-wool Sheep Skin Tissue[J].Journal of Xinjiang Agricultural University,2013(4):269-274.
Authors:ZHAN Zhen-hong  HUANG Xi-xia  TIAN Ke-chuan  WU Wei-wei  Hanekezi Tulafu  TIAN Yue-zhen  Mayila Tuersun  Aimaitijiang Maimaiti  HE Li  SHI Xiao-lei  LIU Chun-jie
Institution:1.College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China ; 2.Institu te of Animal Science,Xinjiang Academy of Animal Sciences, Urumqi 830000,China)
Abstract:The objective of this paper was to investigate the normalized full-length eDNA library of Xinji fine wool sheep skin tissue, based on which EST bioinformatics were analyzed to expect to find the main effect genes or related genes,and then to evaluate eDNA library by use of three methods including colony PCR,the culture fluid PCR, plasmid fast indentification of eDNA library. By sequencing, the BLASTn search,comparison were analyzed by the use of DNA star software on the NCBI. The preliminary results showed that the storage capacity of the eDNA library was 1.57 X 106 pfu/mL, colong PCR, small fragment rate positively cloned by the culture fluid PCR was 80%- 90%,the size of cloned fragment was 0.6-2.0 kb, eD- NA was 300-500 bp, and plasmid rapid identification was about 90%, with about 3.5- 5.0 kb the cloned fragment size carrier . Ptasmid rapid identification of the effect a little better than the other two methods, relatively short time was cost,while small fragment was slightly higher, cDNA library was pre- served in good condition which to meets the quality requirements of the gene library,a storage capacity is large enough to ensure screening purposes gene. Through the screening positive clones were 57 randomly sequened,then was obtained readable sequence 169 gain,after a bioinformatics inquiry, full gene may be contained in it. Which set the base for further developing related genes with wool traits.
Keywords:Xinji fine wool sheep  cDNA library  quality evaluation test  ESTs sequence analysis
本文献已被 维普 等数据库收录!
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号