云南高致病性PRRSV Nsp2和ORF5基因变异分析

为研究云南省高致病性猪繁殖与呼吸综合征病毒(PRRSV)变异特征,采用RT-PCR对云南省2007年-2008年采集的56份猪组织样品中PRRSV Nsp2、ORF5基因进行检测,获得阳性样品12份,选择6份代表性样品将其PCR产物纯化后,克隆至pMD18-T载体后测序,并与已知代表毒株进行序列比对及系统发育分析。分离株Nsp2基因核苷酸及氨基酸序列同源性分别为94.9%～97.2%和91.4%～95.7%,其中1份样品(07YNMG)在486位～489位氨基酸发生了缺失。在系统进化树上可将其划分为4个亚组群,分离株分别与广东、贵州、浙江、山东等地分离毒株遗传关系密切。ORF5基因核苷酸与氨基酸序列同源性分别为97.8%～99.5%和97.0%～99.5%。氨基酸序列未发现缺失,仅个别位点发生点突变。系统进化树分析表明,分离株与浙江、贵州、广东、云南株亲缘关系较近,而与国内疫苗株以及PRRSV经典代表毒株CH-1a距离较远。

Variation Analysis of Nsp2 and ORF5 Genes of Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Viruses in Yunnan Province

To study the characteristics of the highly pathogenic variant PRRSV in Yunnan province,56 swine tissue samples collected from Yunnan province during 2006 to 2007 were detected by the RT-PCR for Nsp2 gene and ORF5 gene,and 14 positive samples were obtained.The PCR products from 6 representative samples were purified and cloned into pMD18-T vector for sequencing.The results of sequence alignment and phylogenetic analysis with known representative PRRSV strains showed that the homologies of nucleotide and amin...