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Identification of genomic alterations with clinical impact in canine splenic hemangiosarcoma
Authors:Timothy Estabrooks  Anastasia Gurinovich  Jodie Pietruska  Benjamin Lewis  Garrett Harvey  Gerald Post  Lindsay Lambert  Aubrey Miller  Lucas Rodrigues  Michelle E. White  Christina Lopes  Cheryl A. London  Kate Megquier
Affiliation:1. Cummings School of Veterinary Medicine, Tufts University, North Grafton, Massachusetts, USA;2. Tufts Medical Center, Boston, Massachusetts, USA;3. MassBio, UMass Chan Medical School, Worcester, Massachusetts, USA;4. One Health Company, Palo Alto, California, USA;5. Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
Abstract:Canine hemangiosarcoma (HSA) is an aggressive cancer of endothelial cells with short survival times. Understanding the genomic landscape of HSA may aid in developing therapeutic strategies for dogs and may also inform therapies for the rare and aggressive human cancer angiosarcoma. The objectives of this study were to build a framework for leveraging real-world genomic and clinical data that could provide the foundation for precision medicine in veterinary oncology, and to determine the relationships between genomic and clinical features in canine splenic HSA. One hundred and nine dogs with primary splenic HSA treated by splenectomy that had tumour sequencing via the FidoCure® Precision Medicine Platform targeted sequencing panel were enrolled. Patient signalment, weight, metastasis at diagnosis and overall survival time were retrospectively evaluated. The incidence of genomic alterations in individual genes and their relationship to patient variables including outcome were assessed. Somatic mutations in TP53 (n = 44), NRAS (n = 20) and PIK3CA (n = 19) were most common. Survival was associated with presence of metastases at diagnosis and germline variants in SETD2 and NOTCH1. Age at diagnosis was associated with somatic NRAS mutations and breed. TP53 and PIK3CA somatic mutations were found in larger dogs, while germline SETD2 variants were found in smaller dogs. We identified both somatic mutations and germline variants associated with clinical variables including age, breed and overall survival. These genetic changes may be useful prognostic factors and provide insight into the genomic landscape of hemangiosarcoma.
Keywords:angiosarcoma  doxorubicin  genomics  hemangiosarcoma  precision medicine  targeted sequencing
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