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光萼荷属植物SRAP-PCR反应体系建立与引物筛选
引用本文:张飞,王炜勇,张智,葛亚英,沈福泉,郁永明.光萼荷属植物SRAP-PCR反应体系建立与引物筛选[J].中国农学通报,2012,28(10):173-178.
作者姓名:张飞  王炜勇  张智  葛亚英  沈福泉  郁永明
作者单位:浙江省农业科学院花卉研究开发中心,杭州,311202
基金项目:国家自然科学基金项目“光萼荷属观赏凤梨种质资源的分子评价与优异等位基因挖掘”(31101570); 浙江省自然科学基金项目“光萼荷属观赏凤梨种质资源遗传多样性和群体结构的分子评价”(Y3110271); 浙江省重大科技专项“浙江省主产盆花抗逆、高效转基因育种及新品种创制”(2009C12095); 浙江省公益性技术应用研究计划“光萼荷属花卉新种类引选及产业化关键技术研究”(2011C22014); 杭州市种子种苗专项“光萼荷属花卉新种类引选及产业化关键技术研究”(20110332H15)
摘    要:为了建立光萼荷属植物(Aechmea) SRAP-PCR反应体系,为今后光萼荷属植物种质资源研究提供技术支持,本研究通过L16(45)正交试验设计,对光萼荷属植物SRAP反应体系中的Mg2+、dNTPs、Taq DNA聚合酶、引物和模板DNA浓度等5个因素进行优化实验,并筛选多态性SRAP引物组合。结果表明,光萼荷属植物的最佳SRAP反应体系为1.50 mmol/L Mg2+、400 μmol/L dNTPs、1.5 U Taq DNA聚合酶、15 μmol/L引物、30 ng模板DNA及1×PCR buffer。各因素对SRAP-PCR扩增反应结果影响的差异较大,依次为模板DNA>Taq DNA聚合酶>dNTPs>引物>Mg2+。从56对SRAP引物组合中筛选出51对扩增条带清晰、多态性丰富的SRAP引物组合,多态性引物比率达90%以上。通过不同光萼荷属植物和不同引物组合对该反应体系进行验证,均获得了多态性丰富、条带清晰的扩增图谱,表明本研究建立的光萼荷属植物SRAP-PCR反应体系稳定可靠。

关 键 词:RAPD  RAPD  
收稿时间:2011/9/20 0:00:00
修稿时间:2012/1/11 0:00:00

Establishment of SRAP-PCR reaction system of Aechmea species and screening for polymorphic primers
Zhang Fei , Wang Weiyong , Zhang Zhi , Ge Yaying , Shen Fuquan , Yu Yongming.Establishment of SRAP-PCR reaction system of Aechmea species and screening for polymorphic primers[J].Chinese Agricultural Science Bulletin,2012,28(10):173-178.
Authors:Zhang Fei  Wang Weiyong  Zhang Zhi  Ge Yaying  Shen Fuquan  Yu Yongming
Institution:( Flower Research & Development Centre,Zhejiang Academy of Agricultural Sciences ,Hangzhou 311202)
Abstract:The aim was to establish SRAP-PCR reaction system and provide a new tool for future research on Aechmea germplasm.A orthogonal design of L16 (45) was used to optimize SRAP-PCR reaction system for Aechmea species with 5 factors,namely Mg2+ ,dNTPs,primers,Taq DNA polymerase and template DNA,and SRAP primer combinations were screened for polymorphism.The result showed that a suitable SRAP-PCR reaction system for Aechmea species was 1.50 mmol/L Mg2+,400 μmol/L dNTPs,1.5 U Taq DNA polymerase, 15 μmol/L primer combination,30 ng template DNA and 1 × PCR buffer.In addition,each factor in SRAP-PCR reaction system had different effects on the amplified patterns and the descending order was DNA Taq DNA polymerasedNTPsprimerMg2+.A total of 51 polymorphic SRAP primer combinations were screened out from 56 SRAP primer combinations,with the polymorphic primer ratio more than 90%.The optimized SRAP-PCR reaction system was identified by different genomic DNAs of Aechmea species and different SRAP primer combinations;as a result,the amplified pattern with rich polymorphism and clear bands was obtained.It proved that the established SRAP-PCR reaction system for Aechmea species was steady and reliable.
Keywords:Aechmea  SRAP-PCR  orthogonal experiment design  optimization of reaction system  primer screening
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