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梨S基因芯片的试制及分子杂交条件的优化
引用本文:江南,谭晓风,陈洪,王秀利,张琳,曾艳玲.梨S基因芯片的试制及分子杂交条件的优化[J].园艺学报,2008,35(4):475-486.
作者姓名:江南  谭晓风  陈洪  王秀利  张琳  曾艳玲
作者单位:(中南林业科技大学经济林育种与栽培国家林业局重点实验室,长沙410004;湖南工业大学绿色包装与生物纳米技术应用湖南省重点实验室,湖南株洲 412008)
基金项目:国家林业局重点科学技术研究计划林业新技术开发与储备专项,湖南省教育厅科研项目,湖南省科技计划,中南林业科技大学校科研和校改项目
摘    要: 为研究寡核苷酸芯片在确定梨品种S基因型中的应用价值,根据梨自交不亲和基因的结构特点设计了部分S基因的检测探针,并制成寡核苷酸芯片;采用引物Cy3荧光标记法标记检测样品的PCR产物并进行杂交,以检测不同样品的S基因型。结果表明:通过对不同杂交温度、杂交时间等的探索获得了较好的反应条件并用制备的芯片检测了已知S基因型的梨样品,检测结果与各品种的已知基因型相符。证明寡核苷酸芯片检测梨品种的S基因型是一种切实可行的检测方法,若对芯片进一步完善,则今后在梨的自交不亲和性状的机理研究及梨自交不亲和性状的利用等方面将有着广阔的应用前景。

关 键 词:  自交不亲和性  S  -RNase基因  基因芯片  分子杂交
收稿时间:2007-10-19

Preparation of Prototype S-RNase Microarray and Molecule Hybridization Condition
JIANG Nan,TAN Xiao-feng,CHEN Hong,WANG Xiu-li,ZHANG Lin,ZENG Yan-ling.Preparation of Prototype S-RNase Microarray and Molecule Hybridization Condition[J].Acta Horticulturae Sinica,2008,35(4):475-486.
Authors:JIANG Nan  TAN Xiao-feng  CHEN Hong  WANG Xiu-li  ZHANG Lin  ZENG Yan-ling
Institution:(The Key Laboratory of Non-Wood Forest Product of State Forestry Administration, Central-South University of Forestry and Technology,Changsha 410004, China; Key Laboratory of Green Packaging and Biological Nanotechnology, Hunan University of Technology, Zhuzhou Hunan, 412008, China)
Abstract:To explore the application of oligonucleotide microarray in identification of pears S-genotype, some probes for S-RNase detection were designed according to the structure characteristic of self-incompatibility gene, and oligonucleotide microarray was prepared. The PCR products of S-RNase were amplified by Cy3-labeled primer and hybridized with the microarray in order to detect the S-genotype of pears. Optimized reaction conditions were gained by exploration of hybridization temperature and hybridization time. The microarray results of S-genotype of pear was similar with the RFLP and sequenced results. In conclusion:, the oligonucleotide microarray is an effective method in detecting S-genotype of pear. With the future improvement, it could be widely used in the study of self-incompatibility of pear.
Keywords:pear  self-incompatibility  S-RNase gene  gene chip  hybridization
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