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Cross-transferability of SSR markers in <Emphasis Type="Italic">Osmanthus</Emphasis>
Authors:Lisa W Alexander  Chandra S Thammina  Matthew Kramer
Institution:1.Floral and Nursery Plants Research Unit,US National Arboretum, US Department of Agriculture, Agricultural Research Service, Otis L. Floyd Nursery Research Center,Mcminnville,USA;2.Floral and Nursery Plants Research Unit,US National Arboretum, US Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Center,Beltsville,USA;3.Department of Plant Biology and Pathology,Rutgers University,New Brunswick,USA;4.US Department of Agriculture, Agricultural Research Service, Statistics Group,Beltsville,USA
Abstract:Developing a molecular tool kit for hybrid breeding of Osmanthus species and related genera is an important step in creating a systematic breeding program for this species. To date, molecular resources have been aimed solely at Osmanthus fragrans with little work to develop markers for other species and cultivars. The objectives of this study were to (1) determine cross-transferability of O. fragrans and Chionanthus retusus derived SSRs in diverse Osmanthus taxa, (2) quantify the influence of locus-specific factors on cross-transferability, and (3) determine the genetic relationships between accessions. We tested 70 SSR markers derived from O. fragrans and C. retusus in 24 accessions of Osmanthus. Sixty-seven markers showed transfer to at least one other Osmanthus species with an overall transfer rate of 84% of loci across taxa. Genotyping with 42 microsatellite markers yielded a total of 367 loci. Number of alleles per locus ranged from 2 to 17 with a mean of 8.7 ± 4.8. Mean observed and expected heterozygosities were 0.560 ± 0.225 and 0.688 ± 0.230, respectively. Percent of polymorphic loci ranged from 40% in Osmanthus delavayi to 100% in O. fragrans. Osmanthus fragrans had the highest mean number of alleles per locus (4.2) while O. delavayi had the lowest (1.1). A reduced suite of eight-markers can distinguish between accessions with non-exclusion probabilities of identity from 3.91E?04 to 2.90E?07. The SSR markers described herein will be immediately useful to characterize germplasm, identify hybrids, and aid in understanding the level of genetic diversity and relationships within the cultivated germplasm.
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