浙江近海三疣梭子蟹4个群体的控制区序列分析 |
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引用本文: | 李鹏飞,朱文斌,贺舟挺,王跃斌. 浙江近海三疣梭子蟹4个群体的控制区序列分析[J]. 浙江水产学院学报, 2013, 0(6): 484-487,493 |
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作者姓名: | 李鹏飞 朱文斌 贺舟挺 王跃斌 |
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作者单位: | 浙江海洋学院海洋与渔业研究所、浙江省海洋水产研究所,浙江舟山 316100 |
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基金项目: | 浙江省海水增养殖重点实验室开放基金项目 |
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摘 要: | 以浙江近海三疣梭子蟹大螯肌肉的线粒体DNA作为模板,对4群体共67个个体的控制区(D-loop)序列进行了PCR扩增。通过对PCR产物进行双向测序,最终得到了控制区3’端的rRNA部分序列(64 bp)、D-loop全序列(1179 bp)及控制区5’端tRNA-Ile部分序列(73 bp)。经DNASP软件分析得知,67个D-loop序列定义了65个单倍型,在65个单倍型中,除去插入/缺失位点,所有单倍型共检测到344个多态位点,主要发生在D-loop序列的中间区域;D-loop序列检测到26个插入或缺失位点,碱基插入主要发生在中央后端区域,以13 bp重复片断插入的形式进行。每个个体含有0~3个连续重复片断。通过对三疣梭子蟹的遗传多样性分析发现,D-loop序列的单倍型多样性为0.982~1.000,核苷酸多样性指数为0.02770~0.03633,平均核苷酸差异数为31.790~43.304。综合分析,三个成蟹群体的遗传多样性相近,都低于仔蟹的遗传多样性,说明经过遗传育种,可以提高三疣梭子蟹的种质情况,真正实现对三疣梭子蟹的科学利用。
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关 键 词: | 浙江近海 三疣梭子蟹 控制区 遗传多样性 |
Genetic Diversity of Portunus trituberculatus in the Offing of Zhejiang Revealed by D-loop Sequence |
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Affiliation: | LI Peng-fei, ZHU Wen-bin, HE Zhou-ting, et al (Marine and Fishery Research Institute of Zhjiang Ocean University, Marine Fisheries Research Institute of Zhejiang Province, Zhoushan 316100, China) |
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Abstract: | Mitochondrial DNA (mt DNA) of Portunus trituberculatus was prepared as templates from their muscle. The PCR technique was used to amplify the D-loop sequence in 67 individuals of 4 population. The PCR products were sequenced and 64 bp rRNA sequence of 3’end and 1 179 bp of complete D-loop sequences and 73 bp tRNA-Ile of 5’end were obtained (Remove partial sequences of the two ends). By using DNASP soft-ware to analyze the genetic diversity, the result showed that there were 65 haplotypes and 334 variation sites were observed (no inserting/missing sites). The variation sites occurred in the middle of the D-loop sequences. 26 inserting/missing sites were observed in the end of the D-loop sequences too. Results revealed a 13 bp length repetitive sequence in the sequences and individuals differed from each other in frequency and length of the repetitive sequences. As estimated by DNASP, the haplotypic diversity region was 0.982-1.000, the nu-cleotide diversity and the average number of nucleotide defferences were 0.027 70-0.036 33 in D-loop se-quences. It can be concluded that the genetic diversity of P. trituberculatus in the offing of Zhejiang was rich. |
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Keywords: | offing of Zhejaing Portunus trituberculatus D-loop genetic diversity |
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