Single nucleotide polymorphisms in the growth hormone gene of Oreochromis niloticus and their association with growth performance

Polymorphisms in the growth hormone (GH) gene that is associated with the growth rate of farmed fish have been the target of many breeding programmes. The present study aimed to identify single nucleotide polymorphisms (SNPs) in GH gene regions to evaluate the association of SNP variations with the growth rate of two Nile tilapia: Oreochromis niloticus (Linnaeus, 1758) strains. The targeted regions were amplified, sequenced, aligned and screened for the presence of SNPs; thereafter, performance tests were used to check for the association between SNPs and weight. Allele and genotype frequencies were estimated for each SNP and genotype. Genotype blocks or sets of SNP genotypes and frequencies were also estimated. Association between SNPs and growth rate was statistically evaluated using a univariate linear mixed model that included both fixed and random effects. A total of 10 SNPs were identified, nine in the proximal promoter and one located in the 5′ UTR, forming 10 genotype blocks. In all weight recordings, five genotype blocks were significantly associated with the highest weights. Single nucleotide polymorphisms 6‐10 were also found to be significantly associated with growth (p‐value < .05). Genotypes with higher additive genetic values for weight were identified in the Chitralada strain, suggesting a possible impact of these additive effects of the GH SNP genotype on the growth rate of Nile tilapia. These findings may be used as part of marker‐assisted selection in tilapia breeding programmes.     

Parasitoid complex (Hymenoptera, Braconidae, Aphidiinae) of Aphis craccivora Koch (Hemiptera: Aphidoidea) in Iran

The parasitoids (Hymenoptera, Braconidae, Aphidiinae) of the cowpea aphid, Aphis craccivora Koch, were investigated throughout two far distant provinces, Tehran and Sistan-Baluchestan. Colonies of the cowpea aphid were collected from different host plants and reared under laboratory conditions until the parasitoids emerged. The aphids were parasitized by an expected range of parasitoids. The species were Aphidius colemani Viereck, Lysiphlebus fabarum (Marshall), Lysiphlebus confusus Tremblay and Eady, Lysiphlebus testaceipes (Cresson), Binodoxys acalephae (Marshall), Binodoxys angelicae (Haliday), Praon volucre (Haliday) and Ephedrus persicae Froggatt. L. testaceipes is reported here for the first time in Iran. The most common species was L. fabarum followed by B. acalephae and L. confusus. A key is provided for identification and host plant associations are considered.     

Screening techniques and sources of resistance to parasitic angiosperms

Parasitic angiosperms cause great losses in many important crops under different climatic conditions and soil types. The most widespread and important parasitic angiosperms belong to the genera Orobanche, Striga, and Cuscuta. The most important economical hosts belong to the Poaceae, Asteraceae, Solanaceae, Cucurbitaceae, and Fabaceae. Although some resistant cultivars have been identified in several crops, great gaps exist in our knowledge of the parasites and the genetic basis of the resistance, as well as the availability of in vitro screening techniques. Screening techniques are based on reactions of the host root or foliage. In vitro or greenhouse screening methods based on the reaction of root and/or foliar tissues are usually superior to field screenings and can be used with many species. To utilize them in plant breeding, it is necessary to demonstrate a strong correlation between in vitro and field data. The correlation should be calculated for every environment in which selection is practiced. Using biochemical analysis as a screening technique has had limited success. The reason seems to be the complex host-parasite interactions which lead to germination, rhizotropism, infection, and growth of the parasite. Germination results from chemicals produced by the host. Resistance is only available in a small group of crops. Resistance has been found in cultivated, primitive and wild forms, depending on the specific host-parasite system. An additional problem is the existence of pathotypes in the parasites. Inheritance of host resistance is usually polygenic and its transfer is slow and tedious. Molecular techniques have yet to be used to locate resistance to parasitic angiosperms. While intensifying the search for genes that control resistance to specific parasitic angiosperms, the best strategy to screen for resistance is to improve the already existing in vitro or greenhouse screening techniques.     

Cultivar identification and genetic map of mango (Mangifera indica)

Amplified Fragment Length Polymorphism (AFLP) information was used for identification of mango (Mangifera indica L.) cultivars, for studying the genetic relationship among 16 mango cultivars and seven mango rootstocks and for the construction of a genetic linkage map. Six AFLP primer combinations produced 204 clear bands and on the average 34 bands for each combination. The average Band-Sharing between cultivars and rootstocks was 83% and 80%, respectively. The average Band-Sharing for mango is 81%. The probability of obtaining a similar pattern for two different mango cultivars and rootstocks is 6 × 10⁻³and 2 × 10⁻³, respectively. A preliminary genetic linkage map of the mango genome was constructed, based on the progeny of a cross between ‘Keitt’ and ‘Tommy-Atkins’. This linkage map consists of 13 linkage groups and covers 161.5 cm defined by 34 AFLP markers. This revised version was published online in August 2006 with corrections to the Cover Date.     

Present status and future strategy in breeding faba beans (Vicia Faba L.) for resistance to biotic and abiotic stresses

Progress is being made, mainly by ICARDA but also elsewhere, in breeding for resistance to Botrytis, AScochyta, Uromyces, and Orobanche; and some lines have resistance to more than one pathogen. The strategy is to extend multiple resistance but also to seek new and durable forms of resistance. Internationally coordinated programs are needed to maintain the momentum of this work.Tolerance of abiotic stresses leads to types suited to dry or cold environments rather than broad adaptability, but in this cross-pollinated species, the more hybrid vigor expressed by a cultivar, the more it is likely to tolerate various stresses.     

Do Horses Prefer Certain Substrates for Rolling in Grazing Pasture?

We assessed whether rolling damage by grazing horses could be reduced by constructing areas assigned for rolling. A group of horses were enclosed in a paddock with and without rolling areas made of dry soil, sand, and straw. Their behavior was recorded for 1 week in the paddock without any treatment (control paddock). Then the horses were moved to another paddock with the rolling areas (rolling paddock). After a 3-week familiarization period, horses were observed for 1 week. In the rolling paddock, the frequency and time spent rolling were significantly greater in rolling areas than in nonrolling areas. Horses significantly preferred the soil rolling area than sand and straw (P < .05). Although rolling was considered the most relevant body care behavioral element, the effects of the substrate in rolling areas on other body care behavioral activities, such as mutual and self-grooming, also were investigated. The frequency and duration of mutual grooming and the duration of self-grooming decreased significantly in the rolling paddock compared with the control paddock (P < .05). Hence, offering a rolling area encourages horses to roll in these areas and keeps the pasture in good condition; therefore, grazing time can be increased, with less reliance on supplementary feed.     

Chemical stratification in the Seneca/Oswego rivers (NY)

The occurrence and characteristics of chemically-based density stratification in portions of the Seneca and Oswego Rivers, downstream of ion-polluted Onondaga Lake, are described for seven different days in the summer and fall of 1978 and 1981, which covered a wide range of river flows. The results indicate that chemically-based density stratification occurs routinely in the Seneca River downstream of the lake inflow, in response to a continuous chemically-based density difference between the two systems of 0.0015 to 0.0030 g cm^?3. The persistence of the phenomenon, and therefore the longitudinal range over which the river stratification occurred, was dependent on the velocity of river flow and the magnitude of the density gradient that bordered the upper river water and the lower released lake water. During the low flows common to summer the stratification extended approximately 14 km downstream to a dam, and 3 km upstream, of the lake outlet — river junction. Vertical mixing between the stratified layers increased as the flow in the Seneca River increased, and as the vertical density gradient decreased. A dimensionless group, $$\frac{D}{{V\left( {\frac{\rho }{{\Delta _\rho /\Delta _z }}} \right)}}$$ where: D = apparent vertical diffusion (m² hr^?1), V = average velocity of the overlying river flow (m hr^?1 ), p = density at the interface between the stratified layers (g cm^?3), and Ap/Az = density gradient between the stratified layers (g cm^?3 m^?1), was found to be constant for summer low flow conditions for a 6.5 km length of the Seneca River, thus quantifying the interaction between vertical mixing and the included influences for that portion of the river. The occurrence of chemical stratification in the river had dramatic implications on the corresponding distribution of dissolved oxygen (DO). The isolation of the organically enriched lake water in the lower layer enhanced the depletion of DO there, which resulted in the development of substantial (> 4.0 mg 1^?1 ) DO stratification downstream of the discharge from the lake during summer low flow periods.     

Nitrogen fertilizer–induced mineralization of soil organic C and N in six contrasting soils of Bangladesh

A 90‐day laboratory incubation study was carried out using six contrasting subtropical soils (calcareous, peat, saline, noncalcareous, terrace, and acid sulfate) from Bangladesh. A control treatment without nitrogen (N) application was compared with treatments where urea, ammonium sulfate (AS), and ammonium nitrate (AN) were applied at a rate of 100 mg N (kg soil)^–1. To study the effect of N fertilizers on soil carbon (C) turnover, the CO₂‐C flux was determined at nine sampling dates during the incubation, and the total loss of soil carbon (TC) was calculated. Nitrogen turnover was characterized by measuring net nitrogen mineralization (NNM) and net nitrification (NN). Simple and stepwise multiple regressions were calculated between CO₂‐C flux, TC, NNM, and NN on the one hand and selected soil properties (organic C, total N, C : N ratio, CEC, pH, clay and sand content) on the other hand. In general, CO₂‐C fluxes were clearly higher during the first 2 weeks of the incubation compared to the later phases. Soils with high pH and/or indigenous C displayed the highest CO₂‐C flux. However, soils having low C levels (i.e., calcareous and terrace soils) displayed a large relative TC loss (up to 22.3%) and the added N–induced TC loss from these soils reached a maximum of 10.6%. Loss of TC differed depending on the N treatments (urea > AS > AN >> control). Significantly higher NNM was found in the acidic soils (terrace and acid sulfate). On average, NNM after urea application was higher than for AS and AN (80.3 vs. 71.9 and 70.9 N (kg soil)^–1, respectively). However, specific interactions between N‐fertilizer form and soil type have to be taken into consideration. High pH soils displayed larger NN (75.9–98.1 mg N (kg soil)^–1) than low pH soils. Averaged over the six soils, NN after application of urea and AS (83.3 and 82.2 mg N (kg soil)^–1, respectively) was significantly higher than after application of AN (60.6 mg N (kg soil)^–1). Significant relationships were found between total CO₂ flux and certain soil properties (organic C, total N, CEC, clay and sand content). The most important soil property for NNM as well as NN was soil pH, showing a correlation coefficient of –0.33** and 0.45***, respectively. The results indicate that application of urea to acidic soils and AS to high‐pH soils could be an effective measure to improve the availability of added N for crop uptake.     

Carbonyl sulfide and carbon disulfide from the eruptions of mount st. Helens

Ash from the massive 18 May 1980 eruption of Mount St. Helens readily gave off large amounts of carbonyl sulfide and carbon disulfide gases at room temperature. These findings suggest that the sulfur that enhances the Junge sulfate layer in the stratosphere after volcanic eruptions could be carried directly to the upper atmosphere as carbonyl sulfide and carbon disulfide adsorbed on ash particles from major volcanic eruptions.     

Nutrient digestibility studies in Heteropneustes fossilis (Bloch), Clarias batrachus (Linnaeus) and C. gariepinus (Burchell)

The apparent digestibility coefficient (ADC %) for protein in catfishes, Clarias batrachus (Linnaeus) (16–18 cm; 45–50 g), C. gariepinus (Burchell) (21–22 cm; 60–65 g) and Heteropneustes fossilis (Bloch) (10–12 cm; 10–15 g) was estimated for nine feedstuffs of plant and animal origin. Fat digestibility was tested for C. batrachus and C. gariepinus, wherein the influence of feeding frequency on protein digestibility was also examined. The digestibility trials were conducted with triplicate groups of 25 fish each in 70‐L polyvinyl indoor flow‐through (1–1.5 L min^?1) circular tanks (water volume=55 L). Fish were fed to satiation daily, at 08:00 and 18:00 hours, and faecal matter was collected through slow siphoning. For studying the effect of feeding frequency, fish were fed the experimental diets at 08:00, 11:00, 14:00 and 17:00 hours. The protein digestibility of the feedstuffs varied significantly within each test species. However, the protein digestibility values for most of the ingredients tested were comparable between the three catfish species. The most efficient utilization of protein in these fishes was noted for soybean meal followed by lab‐prepared fishmeal. The lowest protein digestibility was recorded for rice bran. Similarly, the utilization of fat from the feedstuffs was also significantly different within each of the two species, C. batrachus and C. gariepinus. Fat digestibility of feed ingredients was similar between the two species. With respect to the fat, soybean meal, lab‐prepared fishmeal, full‐fat soybean meal and dried fish were more efficiently utilized, while the lowest fat digestibility was obtained for rice bran. A marked decline in protein utilization was observed in the two species where the feeding frequency was increased from two to four times a day.