Detection of Ureaplasma diversum in the upper airways of Australian feedlot cattle

Bovine respiratory disease (BRD) exerts a major impact on the beef cattle industry nationally and worldwide, with a range of aetiological factors impacting its pathogenesis. Previous research has focussed on an increasing number of bacteria and viruses that have been shown to play a role in eliciting disease. Recently, additional agents have been emerging as potential contributors to BRD, including the opportunistic pathogen Ureaplasma diversum. To determine if U. diversum was present in Australian feedlot cattle and if that presence was linked to BRD, nasal swabs were collected from a cohort of 34 hospital pen animals and compared to 216 apparently healthy animals sampled contemporaneously at feedlot induction and again after 14 days on feed at an Australian feedlot. All samples were subjected to a de novo polymerase chain reaction (PCR) assay targeting U. diversum in combination with other BRD agents. U. diversum was detected at a low prevalence in cattle at induction (Day 0: 6.9%, Day 14: 9.7%), but in a significantly greater proportion of cattle sampled from the hospital pen (58.8%). When considering the presence of other BRD-associated agents, co-detection of U. diversum and Mycoplasma bovis was most common in hospital pen animals receiving treatment for BRD. These findings suggest that U. diversum may be an opportunistic pathogen involved in the aetiology of BRD in Australian feedlot cattle, in combination with other agents, with further studies are warranted to identify if a causal relationship exists.     

Over-canopy saline sprinkler irrigation of grapevines during different growth stages

Wetting plant foliage with saline irrigation increases the uptake of toxic ions Na⁺ and Cl⁻. Over three consecutive seasons, Colombard vines grafted on Ramsey rootstock were irrigated with saline water (EC 3.5 dS/m) by over-canopy sprinklers during any one of the first three of the four annual growth stages: bud burst to full bloom (treatment BB-FB), full bloom to veraison (treatment FB-V), and veraison to harvest (treatment V-H). At other times, vines received non-saline water (EC 0.5 dS/m) as did the control. Seasonal average soil salinities remained relatively constant over the trial. In contrast, the concentrations of Na⁺ and Cl⁻ in one-year old wood and grape juice more than doubled. In treatments FB-V and V-H the average yield over the three seasons was reduced by up to 15%. Results were compared with those obtained in an earlier study which was undertaken in the same vineyard with the same treatments applied via dripper. With drippers, the maximum reduction in the average yield over three seasons was 2%. Saline sprinkling caused rises in Na⁺ and Cl⁻ concentrations of fruit, leaf lamina and one-year-old wood that were at least 7-fold, 5-fold and 2-fold greater, respectively, than the rises caused by application of the same treatments with drip. Progressive seasonal rises in the concentrations of Na⁺ and Cl⁻ in these tissues were due in part to carryover of salt added in previous seasons; with saline sprinkling the magnitude of these carryovers was 4-fold greater than those with saline drip irrigation. With saline water, vignerons can reduce losses by using irrigation systems which do not wet the foliage.     

Management strategy influences landscape patterns of high-severity burn patches in the southwestern United States

Landscape Ecology - Spatial patterns of high-severity wildfire in forests affect vegetation recovery pathways, watershed dynamics, and wildlife habitat across landscapes. Yet, less is known about...     

Microbial processes and the site of N2O production in a temperate grassland soil

To understand nitrous oxide (N₂O) emissions from terrestrial ecosystems it is necessary to understand the processes leading to N₂O production. Here, for the first time, results are presented which identify in situ the processes of N₂O production in a temperate grassland soil. A small portion of the nitrogen (N) applied in the summer to the grassland soil was rapidly transported below the main rooting zone (>20 cm) and resulted in large N₂O productions at depths of 20-50 cm. Preferential pathways must have been responsible for this movement because the soil conditions were not conducive to leaching by piston flow. The N₂O was entirely produced by nitrate (NO₃⁻) reduction which was surprising because the bulk soil was aerobic. Therefore, reduction processes can operate during times of the year when it is least expected and cause large N₂O concentrations deep in the soil profile.     

Testing the utility of abiotic surrogates for marine habitat mapping at scales relevant to management

Habitat mapping at the scale at which marine protected areas are designed and managed is essential for assessment of, and design for, representation. Most habitat mapping studies rely solely or in part on abiotic surrogates for patterns of biodiversity. The utility of abiotic variables in predicting biological distributions at the local scale (10 s of km) was tested in a remote video survey of macrobenthos in Moreton Bay, Australia. Habitat classifications of the same set of 41 sites based on 6 abiotic variables and abundances of 89 taxa and bioturbation indicators were compared using correlation, regression and ordination analyses. The concepts of false homogeneity (abiotically similar but biologically distinct) and false heterogeneity (abiotically distinct but biologically similar) were defined to describe types of errors associated with using abiotic surrogates to construct habitat maps, and quantified using two separate methods. Overall, the best prediction by abiotic surrogates explained less than 30% of the pattern of biological similarity. Errors of false homogeneity were between 20% and 62%, depending on the methods of estimation. Predictive capability of abiotic surrogates at the taxon level was poor, with only 6% of taxon/surrogate correlations significant. Abiotic variables did not discriminate sufficiently between different soft bottom communities to be a reliable basis for mapping. These results have implications for the widespread use of abiotic surrogates in marine habitat mapping to plan for, or assess, representation in marine protected areas. Little confidence can be placed in marine habitat classifications based solely or largely on abiotic surrogates without calibration by rigorous biological surveys at the appropriate scale. Therefore, it is questionable whether marine protected areas designed on this basis can have measurable benefits for conservation.     

Restoring the capacity of spent mushroom compost to treat coal mine drainage by reducing the inflow rate: A microcosm experiment

Four volumes of spent mushroom compost were exposed to synthetic coal mine drainage (pH 3.5, 48 mg L^?1 Fe, 22 mg L^?1 Mn) under oxidizing conditions (Eh 300 to 400 mV) at a relatively high rate of flow. After 15 days, the compost lost its ability to elevate pH, to lower the redox potential, to lower outlet iron concentrations, and to lower manganese concentrations, with larger volumes retaining more Fe and H⁺, but less Mn. Estimated retention maxima per liter of spent mushroom compost were 281 μeq H⁺, 5.56 g Fe, and 0.15 g Mn. These values are similar to those reported elsewhere for peat. The ‘saturated’ compost was then mixed and exposed to mine water in order to eliminate ‘dead zones’ in the compost. Subsequently, the compost was re-exposed to synthetic mine water (pH 4.0, 60 mg L^?1 Fe, O mg L^?1 Mn) under a much lower flow rate and less oxidizing regime for a period of 114 days. Under the low flow regime, iron was first exported from the compost as reducing conditions were established, and then retained on a stable basis. In addition, Eh was lowered and pH was elevated by the compost. On a net basis, the capacity of the compost to retain iron was increased and apparently stable under the decreased flow conditions.     

Fate of xanthohumol and related prenylflavonoids from hops to beer

The fate of three prenylated flavonoids of the chalcone type, xanthohumol, desmethylxanthohumol, and 3'-geranylchalconaringenin, was monitored with LC/MS-MS from hops (Humulus lupulus L.) to beer in two brewing trials. The three prenylchalcones were largely converted into their isomeric flavanones, isoxanthohumol, prenylnaringenins, and geranylnaringenins, respectively, in the boiling wort. Losses of prenylflavonoids were due to incomplete extraction from the hops into the wort (13-25%), adsorption to insoluble malt proteins (18-26%), and adsorption to yeast cells (11-32%) during fermentation. The overall yield of xanthohumol, after lagering of the beer and largely in the form of isoxanthohumol, amounted to 22-30% of the hops' xanthohumol. About 10% of the hops' desmethylxanthohumol, completely converted into prenylnaringenins, remained in the beers. 3'-Geranylchalconaringenin behaved similarly to desmethylxanthohumol. Solubility experiments indicated that (1) malt carbohydrates form soluble complexes with xanthohumol and isoxanthohumol and (2) solubility does not dictate the isoxanthohumol levels of finished beers.     

Comparison of isothiocyanate metabolite levels and histone deacetylase activity in human subjects consuming broccoli sprouts or broccoli supplement

Increased consumption of cruciferous vegetables such as broccoli may reduce the risk of various cancers. Myrosinase is required to convert dietary glucosinolates from broccoli into bioactive isothiocyanates. We evaluated isothiocyanate excretion profiles in healthy subjects who consumed broccoli sprouts or broccoli supplement (no myrosinase) with equivalent glucosinolate content. Urinary metabolites of two major isothiocyanates, sulforaphane and erucin, were measured by liquid chromatography coupled with tandem mass spectrometry. Peak excretion of sulforaphane and erucin was higher and occurred sooner in subjects who consumed broccoli sprouts as compared to subjects who consumed the supplement. A subject-dependent shift in the ratio of urinary sulforaphane to erucin metabolites was observed in both groups, indicating conversion of sulforaphane to erucin. Lower histone deacetylase activity was observed in the peripheral blood mononuclear cells only in subjects consuming sprouts. Fresh broccoli sprouts differ from broccoli supplements in regards to excretion of isothiocyanates and bioactivity in human subjects.