Radioisotope and stable isotope ratios (Δ14C, δ15N) suggest larval lamprey growth is dependent on both fresh and aged organic matter in streams

Lampreys have a complex life cycle which includes a multi‐year infaunal larval stage (ammocoete). Gut content analysis has generally identified detritus (i.e., unidentifiable organic matter) as the major dietary component to ammocoetes, though algae can also be important. However, gut content preserves only a snapshot of the animal's diet and does not reflect assimilated material. In order to better characterise the nutritional sources supporting ammocoete growth, we analysed ammocoete body tissue and potential dietary sources at two streams using natural Δ¹⁴C and δ¹⁵N to estimate time‐integrated nutritional support. Bayesian isotope mixing models revealed differences in the importance of sources supporting ammocoetes between sites. Ammocoetes from a stream in a mixed land usage area (~50% agriculture, ~40% forest and ~10% developed) were primarily supported (mean: ~50%) by fresh terrestrial organic matter but were also supported by substantial contributions (mean: ~30%) by aged organic matter (AOM) and autochthonous material (algae; mean ~20%). In a predominantly forested (~90%) headwater stream, different modelling scenarios (uninformed or informed priors) suggested that algal support of ammocoete nutrition ranged from 7% to 45%. However, the model relying on informed priors developed from gut content analysis produced the low estimates, suggesting these were more reliable. When algae were a minor component of the nutrition at the forested site, ammocoetes were highly dependent on AOM (83 ± 26%; mean ± SD). Based on these findings, ammocoete growth and development are predicted to be strongly influenced by both land use and the availability of allochthonous and autochthonous materials of varying ages within streams.     

Bacterial communities associated with natural and commercially grown rooibos (Aspalathus linearis)

Aspalathus linearis is a commercially important plant species endemic to the Cape Floristic Region of South Africa and is used to produce a herbal tea known as rooibos tea. Symbiotic interactions between A. linearis and soil bacteria play an important role in the survival of Aspalathus plants in the highly nutrient-poor, acidic fynbos soil. The aim of this study was to characterize and compare rhizosphere and bulk soil bacterial communities associated with natural and commercially grown A. linearis, as well as the effect of seasonal changes on these communities. Bacterial communities were characterized using high throughput amplicon sequencing, and their correlations with soil chemical properties were investigated. The N-fixing bacterial community was characterized using terminal restriction fragment length polymorphism and real time quantitative polymerase chain reaction. Actinobacteria, Proteobacteria, and Acidobacteria were the most dominant bacterial phyla detected in this study. Highly similar bacterial communities were associated with natural and commercially grown plants. Significant differences in the bacterial community were observed between rhizosphere and bulk soils collected in the dry season, while no significant differences were detected in the wet season. This study provides insights into bacterial community structure and potential factors shaping bacterial community structure with commercially important A. linearis.     

A KCNJ10 mutation previously identified in the Russell group of terriers also occurs in Smooth-Haired Fox Terriers with hereditary ataxia and in related breeds

Background

Hereditary ataxias with similar phenotypes were reported in the Smooth-Haired Fox Terrier, the Jack Russell Terrier and the Parson Russell Terrier. However, segregation analyses showed differing inheritance modes in these breeds. Recently, molecular genetic studies on the Russell group of terriers found independent mutations in KCNJ10 and CAPN1, each associated with a specific clinical subtype of inherited ataxia. The aim of this study was to clarify whether or not Smooth-Haired Fox Terriers with hereditary ataxia and dogs of other related breeds harbor either of the same mutations. A sub goal was to update the results of KCNJ10 genotyping in Russell group terriers.

Findings

Three Smooth-Haired Fox Terriers with hereditary ataxia and two Toy Fox Terriers with a similar phenotype were all homozygous for the KCNJ10 mutation. The same mutation was also found in a heterozygous state in clinically unaffected Tenterfield Terriers (n = 5) and, in agreement with previous studies, in Jack Russell Terriers, Parson Russell Terriers, and Russell Terriers.

Conclusions

A KCNJ10 mutation, previously associated with an autosomal recessive spinocerebellar ataxia in Jack Russell Terriers, Parson Russell Terriers, and Russell Terriers segregates in at least three more breeds descended from British hunting terriers. Ataxic members of two of these breeds, the Smooth-Haired Fox Terrier and the Toy Fox Terrier, were homozygous for the mutation, strengthening the likelihood that this genetic defect is indeed the causative mutation for the disease known as “hereditary ataxia” in Fox Terriers and “spinocerebellar ataxia with myokymia, seizures or both” in the Russell group of terriers.     

Development of a murine ocular posterior segment explant culture for the study of intravitreous vector delivery

The objective of this study was to develop a murine retinal/choroidal/scleral explant culture system to facilitate the intravitreous delivery of vectors. Posterior segment explants from adult mice of 2 different age groups (4 wk and 15 wk) were cultured in serum-free medium for variable time periods. Tissue viability was assessed by gross morphology, cell survival quantification, activated caspase-3 expression, and immunohistochemistry. To model ocular gene therapy, explants were exposed to varying transducing units of a lentiviral vector expressing the gene for green fluorescent protein for 48 h. Explant retinal cells remained viable for approximately 1 wk, although the ganglion cell layer developed apoptosis between 4 and 7 d. Following vector infusion into the posterior segment cups, viral transduction was noted in multiple retinal layers in both age groups. An age of donor mouse influence was noted and older mice did not transduce as well as younger mice. This explant offers an easily managed posterior segment ocular culture with minimum disturbance of the tissue, and may be useful for investigating methods of enhancing retinal gene therapy under controlled conditions.     

Interactions between soil scarification and Norway spruce seedling types

Interactions between scarification treatments and seedling types of Norway spruce were examined at two different locations in southern Sweden. The scarification treatments were not scarified control, mounding and soil inversion and the seedling types were a 10 week-old containerized seedling (mini seedling), a 2 year-old containerized seedling and a 2 year-old hybrid seedling, grown as a containerized seedling the first year and as a bare-root seedling the second year. Site preparation intensity had a greater effect on the mini seedlings. The results indicated that mini seedlings established faster in the soil inversion treatment compared to the larger seedling types. At the same seedling age, the mini seedlings had faster or similar growth rate as the containerized and the hybrid seedlings regardless of scarification treatment. Although mini seedlings grew as well as or even better than larger seedlings if they were successfully established, they were more sensitive to their planting environment and proper handling was critical. Problems with frost heaving and competing vegetation have to be taken into consideration when choosing site preparation method and seedling type.     

Age effects on Norway spruce (Picea abies) susceptibility to ozone uptake: a novel approach relating stress avoidance to defense

Cumulative ozone (O3) uptake and O3 flux were related to physiological, morphological and biochemical characteristics of Norway spruce (Picea abies (L.) Karst.) trees of different ages. Under ambient CO2 conditions, photosynthetic capacity (Amax) declined in mature trees when cumulative O3 uptake into needles, which provides a measure of effective O3 dose, exceeded 21 mmol m-2 of total needle surface area. A comparable decline in Amax of seedlings occurred when cumulative O(3) uptake was only 4.5 mmol m-2. The threshold O3 flux causing a significant decline in Amax ranged between 2.14 and 2.45 nmol m-2 s-1 in mature trees and seedlings subjected to exposure periods of > or = 70 and > or = 23 days, respectively. The greater O3 sensitivity of young trees compared with mature trees was associated with needle morphology. Biomass of a 100-needle sample increased significantly with tree age, whereas a negative correlation was found for specific leaf area, these changes parallel those observed during differentiation from shade-type to sun-type needles with tree ontogeny. Age-dependent changes in leaf morphology were related to changes in detoxification capacity, with area-based concentrations of ascorbate increasing during tree ontogeny. These findings indicate that the extent of O3-induced injury is related to the ratio of potentially available antioxidants to O3 influx. Because this ratio, when calculated for ascorbate, increased with tree age, we conclude that the ratio may serve as an empirical basis for characterizing age-related differences in tree responses to O3.